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Fusion gene ID: 32810 |
FusionGeneSummary for SCD5_STAP1 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: SCD5_STAP1 | Fusion gene ID: 32810 | Hgene | Tgene | Gene symbol | SCD5 | STAP1 | Gene ID | 79966 | 26228 |
| Gene name | stearoyl-CoA desaturase 5 | signal transducing adaptor family member 1 | |
| Synonyms | ACOD4|FADS4|HSCD5|SCD2|SCD4 | BRDG1|STAP-1 | |
| Cytomap | 4q21.22 | 4q13.2 | |
| Type of gene | protein-coding | protein-coding | |
| Description | stearoyl-CoA desaturase 5acyl-CoA-desaturase 4stearoyl-CoA 9-desaturasestearoyl-CoA desaturase 2stearoyl-CoA desaturase 4 | signal-transducing adaptor protein 1BCR downstream-signaling protein 1docking protein BRDG1stem cell adaptor protein 1 | |
| Modification date | 20180523 | 20180519 | |
| UniProtAcc | Q86SK9 | Q9ULZ2 | |
| Ensembl transtripts involved in fusion gene | ENST00000319540, ENST00000273908, ENST00000282709, | ENST00000265404, ENST00000396225, | |
| Fusion gene scores | * DoF score | 5 X 2 X 4=40 | 4 X 4 X 3=48 |
| # samples | 5 | 4 | |
| ** MAII score | log2(5/40*10)=0.321928094887362 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(4/48*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: SCD5 [Title/Abstract] AND STAP1 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | SCD5 | GO:0006636 | unsaturated fatty acid biosynthetic process | 15907797 |
| Tgene | STAP1 | GO:0050861 | positive regulation of B cell receptor signaling pathway | 10518561 |
| Tgene | STAP1 | GO:1903997 | positive regulation of non-membrane spanning protein tyrosine kinase activity | 10518561 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | PRAD | TCGA-HC-7212-01A | SCD5 | chr4 | 83557744 | - | STAP1 | chr4 | 68472014 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| Frame-shift | ENST00000319540 | ENST00000265404 | SCD5 | chr4 | 83557744 | - | STAP1 | chr4 | 68472014 | + |
| In-frame | ENST00000319540 | ENST00000396225 | SCD5 | chr4 | 83557744 | - | STAP1 | chr4 | 68472014 | + |
| intron-3CDS | ENST00000273908 | ENST00000265404 | SCD5 | chr4 | 83557744 | - | STAP1 | chr4 | 68472014 | + |
| intron-3CDS | ENST00000273908 | ENST00000396225 | SCD5 | chr4 | 83557744 | - | STAP1 | chr4 | 68472014 | + |
| intron-3CDS | ENST00000282709 | ENST00000265404 | SCD5 | chr4 | 83557744 | - | STAP1 | chr4 | 68472014 | + |
| intron-3CDS | ENST00000282709 | ENST00000396225 | SCD5 | chr4 | 83557744 | - | STAP1 | chr4 | 68472014 | + |
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FusionProtFeatures for SCD5_STAP1 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| SCD5 | STAP1 |
| Stearyl-CoA desaturase that utilizes O(2) and electronsfrom reduced cytochrome b5 to introduce the first double bond intosaturated fatty acyl-CoA substrates. Catalyzes the insertion of acis double bond at the delta-9 position into fatty acyl-CoAsubstrates including palmitoyl-CoA and stearoyl-CoA(PubMed:15907797, PubMed:15610069). Gives rise to a mixture of16:1 and 18:1 unsaturated fatty acids.{ECO:0000269|PubMed:15610069, ECO:0000269|PubMed:15907797}. | In BCR signaling, appears to function as a dockingprotein acting downstream of TEC and participates in a positivefeedback loop by increasing the activity of TEC.{ECO:0000269|PubMed:10518561}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for SCD5_STAP1 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_SCD5_ENST00000319540_chr4_83557744_-_STAP1_ENST00000396225_chr4_68472014_+_288aa MPGPATDAGKIPFCDAKEEIRAGLESSEGGGGPERPGARGQRQNIVWRNVVLMSLLHLGAVYSLVLIPKAKPLTLLWAYFCFLLAALGVT AGAHRLWSHRSYRAKLPLRIFLAVANSMAFQNDIFEWSRDHRAHHKYSETDADPHNARRGFFFSHIGWLFVRKHRDVIEKGRKLDVTDLL ADPVVRIQRKYYKISVVLMCFVVPTLVPWYIWGESLWNSYFLASILRYTISLNISWLVNSAAHMYGNRPYDKHISPRQNPLVALGAIGQE |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_SCD5_ENST00000319540_chr4_83557744_-_STAP1_ENST00000396225_chr4_68472014_+_864nt ATGCCAGGCCCGGCCACCGACGCGGGGAAGATCCCTTTCTGCGACGCCAAGGAAGAAATCCGTGCCGGGCTCGAAAGCTCTGAGGGCGGC GGCGGCCCGGAGAGGCCAGGCGCGCGCGGGCAGCGGCAGAACATCGTCTGGAGGAATGTCGTCCTGATGAGCTTGCTCCACTTGGGGGCC GTGTACTCCCTGGTGCTCATCCCCAAAGCCAAGCCACTCACTCTGCTCTGGGCCTACTTCTGCTTCCTCCTGGCCGCTCTGGGTGTGACA GCTGGTGCCCATCGCTTGTGGAGCCACAGGTCCTACCGGGCCAAGCTGCCTCTGAGGATATTTCTGGCTGTCGCCAACTCCATGGCTTTC CAGAATGACATCTTCGAGTGGTCCAGGGACCACCGAGCCCACCACAAGTACTCAGAGACGGATGCTGACCCCCACAATGCCCGCCGGGGC TTCTTCTTCTCCCATATTGGGTGGCTGTTTGTTCGCAAGCATCGAGATGTTATTGAGAAGGGGAGAAAGCTTGACGTCACTGACCTGCTT GCTGATCCTGTGGTCCGGATCCAGAGAAAGTACTATAAGATCTCCGTGGTGCTCATGTGCTTTGTGGTCCCCACGCTGGTGCCCTGGTAC ATCTGGGGAGAGAGTCTGTGGAATTCCTACTTCTTGGCCTCTATTCTCCGCTATACCATCTCACTCAACATCAGCTGGCTGGTCAACAGC GCCGCCCACATGTATGGAAACCGGCCCTATGACAAGCACATCAGCCCTCGGCAGAACCCACTCGTCGCTCTGGGTGCCATTGGTCAAGAA |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_SCD5_ENST00000319540_chr4_83557744_-_STAP1_ENST00000396225_chr4_68472014_+_1360nt ATTTTCACAGCTCCTCCTCCCCGGCCGCGCGCCCCTCCCGCCCCGCGCGCGCCTCCTCTTTCTCGCGGCCGAGTTCAGCCCGGGCAGCCA TATGGGGGATACGCCAGCAACAGACGCCGGCCGCCAAGATCTGCATCCCTAGGCCACGCTAAGACCCTGGGGAAGAGCGCAGGAGCCCGG GAGAAGGGCTGGAAGGAGGGGACTGGACGTGCGGAGAATTCCCCCCTAAAAGGCAGAAGCCCCCGCCCCCACCCTCGAGCTCCGCTCGGG CAGAGCGCCTGCCTGCCTGCCGCTGCTGCGGGCGCCCACCTCGCCCAGCCATGCCAGGCCCGGCCACCGACGCGGGGAAGATCCCTTTCT GCGACGCCAAGGAAGAAATCCGTGCCGGGCTCGAAAGCTCTGAGGGCGGCGGCGGCCCGGAGAGGCCAGGCGCGCGCGGGCAGCGGCAGA ACATCGTCTGGAGGAATGTCGTCCTGATGAGCTTGCTCCACTTGGGGGCCGTGTACTCCCTGGTGCTCATCCCCAAAGCCAAGCCACTCA CTCTGCTCTGGGCCTACTTCTGCTTCCTCCTGGCCGCTCTGGGTGTGACAGCTGGTGCCCATCGCTTGTGGAGCCACAGGTCCTACCGGG CCAAGCTGCCTCTGAGGATATTTCTGGCTGTCGCCAACTCCATGGCTTTCCAGAATGACATCTTCGAGTGGTCCAGGGACCACCGAGCCC ACCACAAGTACTCAGAGACGGATGCTGACCCCCACAATGCCCGCCGGGGCTTCTTCTTCTCCCATATTGGGTGGCTGTTTGTTCGCAAGC ATCGAGATGTTATTGAGAAGGGGAGAAAGCTTGACGTCACTGACCTGCTTGCTGATCCTGTGGTCCGGATCCAGAGAAAGTACTATAAGA TCTCCGTGGTGCTCATGTGCTTTGTGGTCCCCACGCTGGTGCCCTGGTACATCTGGGGAGAGAGTCTGTGGAATTCCTACTTCTTGGCCT CTATTCTCCGCTATACCATCTCACTCAACATCAGCTGGCTGGTCAACAGCGCCGCCCACATGTATGGAAACCGGCCCTATGACAAGCACA TCAGCCCTCGGCAGAACCCACTCGTCGCTCTGGGTGCCATTGGTCAAGAACCCAGTATGGAAGGGAGAAGTGAAAAGTTGAAGAAAAATC CACACATTGCATGAAATACAATGTGAAAGCTCCTTTGTATATCTTGGGGAAAGACTATGTGAGACAGAGGGAGAAAACAGCCATTGACAA CTCAAGGAGAGAGGCCTCGGGGGGAAAAAAAGATCAACCTGGCCAAAACCTTGAAAATCCGGCTTCTTGACTTGTGAGAAAATAAATTTG |
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FusionGenePPI for SCD5_STAP1 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| SCD5 | CNDP1, PPP2R1A, UQCRC2, TCTN2, TCTN3 | STAP1 | SH3KBP1, FAM134C, CD2AP, SULT1A1, CAPZA2, CAPZB, CCND3 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for SCD5_STAP1 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SCD5_STAP1 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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