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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 32799

FusionGeneSummary for SCARB2_STAU2

check button Fusion gene summary
Fusion gene informationFusion gene name: SCARB2_STAU2
Fusion gene ID: 32799
HgeneTgene
Gene symbol

SCARB2

STAU2

Gene ID

950

27067

Gene namescavenger receptor class B member 2staufen double-stranded RNA binding protein 2
SynonymsAMRF|CD36L2|EPM4|HLGP85|LGP85|LIMP-2|LIMPII|SR-BII39K2|39K3
Cytomap

4q21.1

8q21.11

Type of geneprotein-codingprotein-coding
Descriptionlysosome membrane protein 285 kDa lysosomal membrane sialoglycoprotein85 kDa lysosomal sialoglycoprotein scavenger receptor class B, member 2CD36 antigen (collagen type I receptor, thrombospondin receptor)-like 2 (lysosomal integral membrane protein IIdouble-stranded RNA-binding protein Staufen homolog 2staufen homolog 2staufen, RNA binding protein, homolog 2
Modification date2018051920180519
UniProtAcc

Q14108

Q9NUL3

Ensembl transtripts involved in fusion geneENST00000264896, ENST00000452464, 
ENST00000522695, ENST00000524300, 
ENST00000523558, ENST00000521210, 
ENST00000355780, ENST00000519961, 
ENST00000521727, ENST00000521451, 
ENST00000522509, ENST00000517542, 
ENST00000524104, ENST00000522962, 
ENST00000521419, 
Fusion gene scores* DoF score11 X 9 X 5=49510 X 9 X 5=450
# samples 1112
** MAII scorelog2(11/495*10)=-2.16992500144231
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(12/450*10)=-1.90689059560852
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: SCARB2 [Title/Abstract] AND STAU2 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGALDBRCATCGA-A2-A0D0-01ASCARB2chr4

77116860

-STAU2chr8

74495065

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shiftENST00000264896ENST00000522695SCARB2chr4

77116860

-STAU2chr8

74495065

-
Frame-shiftENST00000264896ENST00000524300SCARB2chr4

77116860

-STAU2chr8

74495065

-
Frame-shiftENST00000264896ENST00000523558SCARB2chr4

77116860

-STAU2chr8

74495065

-
Frame-shiftENST00000264896ENST00000521210SCARB2chr4

77116860

-STAU2chr8

74495065

-
Frame-shiftENST00000264896ENST00000355780SCARB2chr4

77116860

-STAU2chr8

74495065

-
Frame-shiftENST00000264896ENST00000519961SCARB2chr4

77116860

-STAU2chr8

74495065

-
Frame-shiftENST00000264896ENST00000521727SCARB2chr4

77116860

-STAU2chr8

74495065

-
Frame-shiftENST00000264896ENST00000521451SCARB2chr4

77116860

-STAU2chr8

74495065

-
Frame-shiftENST00000264896ENST00000522509SCARB2chr4

77116860

-STAU2chr8

74495065

-
Frame-shiftENST00000264896ENST00000517542SCARB2chr4

77116860

-STAU2chr8

74495065

-
5CDS-intronENST00000264896ENST00000524104SCARB2chr4

77116860

-STAU2chr8

74495065

-
5CDS-intronENST00000264896ENST00000522962SCARB2chr4

77116860

-STAU2chr8

74495065

-
5CDS-intronENST00000264896ENST00000521419SCARB2chr4

77116860

-STAU2chr8

74495065

-
Frame-shiftENST00000452464ENST00000522695SCARB2chr4

77116860

-STAU2chr8

74495065

-
Frame-shiftENST00000452464ENST00000524300SCARB2chr4

77116860

-STAU2chr8

74495065

-
Frame-shiftENST00000452464ENST00000523558SCARB2chr4

77116860

-STAU2chr8

74495065

-
Frame-shiftENST00000452464ENST00000521210SCARB2chr4

77116860

-STAU2chr8

74495065

-
Frame-shiftENST00000452464ENST00000355780SCARB2chr4

77116860

-STAU2chr8

74495065

-
Frame-shiftENST00000452464ENST00000519961SCARB2chr4

77116860

-STAU2chr8

74495065

-
Frame-shiftENST00000452464ENST00000521727SCARB2chr4

77116860

-STAU2chr8

74495065

-
Frame-shiftENST00000452464ENST00000521451SCARB2chr4

77116860

-STAU2chr8

74495065

-
Frame-shiftENST00000452464ENST00000522509SCARB2chr4

77116860

-STAU2chr8

74495065

-
Frame-shiftENST00000452464ENST00000517542SCARB2chr4

77116860

-STAU2chr8

74495065

-
5CDS-intronENST00000452464ENST00000524104SCARB2chr4

77116860

-STAU2chr8

74495065

-
5CDS-intronENST00000452464ENST00000522962SCARB2chr4

77116860

-STAU2chr8

74495065

-
5CDS-intronENST00000452464ENST00000521419SCARB2chr4

77116860

-STAU2chr8

74495065

-

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FusionProtFeatures for SCARB2_STAU2


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
SCARB2

Q14108

STAU2

Q9NUL3

Acts as a lysosomal receptor for glucosylceramidase(GBA) targeting. {ECO:0000269|PubMed:18022370}. (Microbial infection) Acts as a receptor for enterovirus71. {ECO:0000269|PubMed:19543282}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for SCARB2_STAU2


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for SCARB2_STAU2


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
SCARB2THBS1, ATP6V1B1, NONO, DDX1, HSPD1, TAF15, ATP4A, GEM, LGALS8, NAALADL2, PTPRK, WISP3, NTRK1, SMC6, EIF2AK2, PRPF8, PNKD, MYOF, RHCG, VAMP3, SPAG9, GLMN, RAB27B, SCGB1D1, LMNASTAU2KIAA1377, DHX58, EIF2AK2, ELAVL1, COPS5, DICER1, PRKRA, UPF1, ZNF346, ADAR, SHMT2, MOV10, NXF1, BMI1, HIST1H1A, RPL14, RPL8, RPL6, NIFK, RPS2, PRR11, RBM4B, ILF2, PAIP1, HNRNPU, MATR3, STRBP, STAU1, GLTSCR2, WDR46, ELAVL2, PPAN, ZCRB1, ZC3HAV1, E4F1, DGCR8, ZNF324B, NXF2, CDX1, RPL37A, ZNF169, HIST1H1E, RPF1, ZNF2, GPATCH4, G3BP1


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for SCARB2_STAU2


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for SCARB2_STAU2


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneSCARB2C0751779Action Myoclonus-Renal Failure Syndrome1CTD_human;ORPHANET;UNIPROT
TgeneSTAU2C0023893Liver Cirrhosis, Experimental1CTD_human