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Fusion gene ID: 32253 |
FusionGeneSummary for RRN3P2_BANP |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: RRN3P2_BANP | Fusion gene ID: 32253 | Hgene | Tgene | Gene symbol | RRN3P2 | BANP | Gene ID | 653390 | 54971 |
| Gene name | RRN3 homolog, RNA polymerase I transcription factor pseudogene 2 | BTG3 associated nuclear protein | |
| Synonyms | - | BEND1|SMAR1|SMARBP1 | |
| Cytomap | 16p11.2 | 16q24.2 | |
| Type of gene | pseudo | protein-coding | |
| Description | RNA polymerase I transcription factor homolog pseudogene 2RRN3 RNA polymerase I transcription factor homolog pseudogeneRRN3-like protein 1 | protein BANPBEN domain-containing protein 1scaffold/matrix-associated region-1-binding protein | |
| Modification date | 20180329 | 20180520 | |
| UniProtAcc | Q8N9N5 | ||
| Ensembl transtripts involved in fusion gene | ENST00000564580, | ENST00000286122, ENST00000355163, ENST00000479780, ENST00000393208, ENST00000355022, ENST00000538234, ENST00000393207, ENST00000481948, | |
| Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 2 X 2 X 2=8 |
| # samples | 1 | 2 | |
| ** MAII score | log2(1/1*10)=3.32192809488736 | log2(2/8*10)=1.32192809488736 | |
| Context | PubMed: RRN3P2 [Title/Abstract] AND BANP [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | LD | LAML | TCGA-AB-2868-03A | RRN3P2 | chr16 | 29107476 | + | BANP | chr16 | 88014681 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 3UTR-3CDS | ENST00000564580 | ENST00000286122 | RRN3P2 | chr16 | 29107476 | + | BANP | chr16 | 88014681 | + |
| 3UTR-3CDS | ENST00000564580 | ENST00000355163 | RRN3P2 | chr16 | 29107476 | + | BANP | chr16 | 88014681 | + |
| 3UTR-3CDS | ENST00000564580 | ENST00000479780 | RRN3P2 | chr16 | 29107476 | + | BANP | chr16 | 88014681 | + |
| 3UTR-3CDS | ENST00000564580 | ENST00000393208 | RRN3P2 | chr16 | 29107476 | + | BANP | chr16 | 88014681 | + |
| 3UTR-3CDS | ENST00000564580 | ENST00000355022 | RRN3P2 | chr16 | 29107476 | + | BANP | chr16 | 88014681 | + |
| 3UTR-3CDS | ENST00000564580 | ENST00000538234 | RRN3P2 | chr16 | 29107476 | + | BANP | chr16 | 88014681 | + |
| 3UTR-3CDS | ENST00000564580 | ENST00000393207 | RRN3P2 | chr16 | 29107476 | + | BANP | chr16 | 88014681 | + |
| 3UTR-intron | ENST00000564580 | ENST00000481948 | RRN3P2 | chr16 | 29107476 | + | BANP | chr16 | 88014681 | + |
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FusionProtFeatures for RRN3P2_BANP |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| RRN3P2 | BANP |
| Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}. | Controls V(D)J recombination during T-cell developmentby repressing T-cell receptor (TCR) beta enhancer function. Bindsto scaffold/matrix attachment region beta (S/MARbeta), an ATC-richDNA sequence located upstream of the TCR beta enhancer. Repressescyclin D1 transcription by recruiting HDAC1 to its promoter,thereby diminishing H3K9ac, H3S10ph and H4K8ac levels. PromotesTP53 'Ser-15' phosphorylation and nuclear accumulation, whichcauses cell cycle arrest (By similarity). {ECO:0000250,ECO:0000269|PubMed:16166625}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for RRN3P2_BANP |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for RRN3P2_BANP |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| RRN3P2 | BANP | TRAF2, TP53, MDM2, HIF1A, RELA, NFKB1, HDAC1, PML, TERF2IP, TERF2, NPM1, FOXM1, MVP, PRKAB2, RIMS3, PARP1, EP300, ALAS2, CAMK2D, COL10A1, FHL2, LMO2, MAX, NEDD9, PIM1, POLR2L, PPIB, PPIC, PRKCH, MAP2K1, PSMD9, SNRPB, SP2, TNXB, LMO4, ADAM15, SLC16A3, XAGE1E, BAG5, RBM39, TRAF4, TOX4, TROAP, PPIF, MRPL28, RBPMS, POGZ, ISCU, PHF21A, ZNF581, FAM120C, BANP, PRPF39, PID1, FAM90A1, DNAJA4, LMO3, LGALS14, ZNF471, LSM2, LENG1, ZC2HC1C, CEP76, ZMIZ2, NRIP2, POLDIP3, GFM2, L3MBTL3, LINC01547, C1orf94, LINC00152, RAB3IP, ZNF488, HMGB3P1, C22orf39, CCDC26, SPACA6P, DCDC2B, FAM117B, SH3RF2, C6orf165, FAM71C, LACE1, FOXR1, EPHA10, MIR4435-1HG, CCDC101, PDHB, TMEM25, VMAC, CPSF4L, MAPK1, KHDRBS1, HDAC6, MRRF, XRCC6, H2AFX, ATM, JUN, GATAD1, CCDC53, HEXIM2, AHCYL2, FLCN, TRIM11, GDF10, PFDN4, BFSP2, OLFM2, TRIM25, CDC20, MAPK8 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for RRN3P2_BANP |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for RRN3P2_BANP |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
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