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Fusion gene ID: 32060 |
FusionGeneSummary for RPS15A_ARL6IP1 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: RPS15A_ARL6IP1 | Fusion gene ID: 32060 | Hgene | Tgene | Gene symbol | RPS15A | ARL6IP1 | Gene ID | 6210 | 23204 |
| Gene name | ribosomal protein S15a | ADP ribosylation factor like GTPase 6 interacting protein 1 | |
| Synonyms | S15a | AIP1|ARL6IP|ARMER|SPG61 | |
| Cytomap | 16p12.3 | 16p12.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | 40S ribosomal protein S15asmall ribosomal subunit protein uS8up-regulated by HBV X protein | ADP-ribosylation factor-like protein 6-interacting protein 1ADP-ribosylation factor GTPase 6 interacting protein 1ADP-ribosylation factor-like 6 interacting protein 1ARL-6-interacting protein 1aip-1apoptotic regulator in the membrane of the endoplasm | |
| Modification date | 20180523 | 20180523 | |
| UniProtAcc | P62244 | Q15041 | |
| Ensembl transtripts involved in fusion gene | ENST00000322989, ENST00000563390, ENST00000575669, ENST00000576436, ENST00000565420, ENST00000569083, | ENST00000304414, ENST00000546206, ENST00000562819, | |
| Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 1 X 1 X 1=1 |
| # samples | 1 | 1 | |
| ** MAII score | log2(1/1*10)=3.32192809488736 | log2(1/1*10)=3.32192809488736 | |
| Context | PubMed: RPS15A [Title/Abstract] AND ARL6IP1 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | RPS15A | GO:0008284 | positive regulation of cell proliferation | 15108328 |
| Hgene | RPS15A | GO:0009615 | response to virus | 15108328 |
| Hgene | RPS15A | GO:0045787 | positive regulation of cell cycle | 15108328 |
| Tgene | ARL6IP1 | GO:0043066 | negative regulation of apoptotic process | 12754298 |
| Tgene | ARL6IP1 | GO:0043154 | negative regulation of cysteine-type endopeptidase activity involved in apoptotic process | 12754298 |
| Tgene | ARL6IP1 | GO:0071787 | endoplasmic reticulum tubular network formation | 24262037 |
| Tgene | ARL6IP1 | GO:1990809 | endoplasmic reticulum tubular network membrane organization | 24262037 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | LD | BRCA | TCGA-A2-A0D2-01A | RPS15A | chr16 | 18796060 | - | ARL6IP1 | chr16 | 18810156 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| Frame-shift | ENST00000322989 | ENST00000304414 | RPS15A | chr16 | 18796060 | - | ARL6IP1 | chr16 | 18810156 | - |
| 5CDS-5UTR | ENST00000322989 | ENST00000546206 | RPS15A | chr16 | 18796060 | - | ARL6IP1 | chr16 | 18810156 | - |
| 5CDS-5UTR | ENST00000322989 | ENST00000562819 | RPS15A | chr16 | 18796060 | - | ARL6IP1 | chr16 | 18810156 | - |
| Frame-shift | ENST00000563390 | ENST00000304414 | RPS15A | chr16 | 18796060 | - | ARL6IP1 | chr16 | 18810156 | - |
| 5CDS-5UTR | ENST00000563390 | ENST00000546206 | RPS15A | chr16 | 18796060 | - | ARL6IP1 | chr16 | 18810156 | - |
| 5CDS-5UTR | ENST00000563390 | ENST00000562819 | RPS15A | chr16 | 18796060 | - | ARL6IP1 | chr16 | 18810156 | - |
| intron-3CDS | ENST00000575669 | ENST00000304414 | RPS15A | chr16 | 18796060 | - | ARL6IP1 | chr16 | 18810156 | - |
| intron-5UTR | ENST00000575669 | ENST00000546206 | RPS15A | chr16 | 18796060 | - | ARL6IP1 | chr16 | 18810156 | - |
| intron-5UTR | ENST00000575669 | ENST00000562819 | RPS15A | chr16 | 18796060 | - | ARL6IP1 | chr16 | 18810156 | - |
| intron-3CDS | ENST00000576436 | ENST00000304414 | RPS15A | chr16 | 18796060 | - | ARL6IP1 | chr16 | 18810156 | - |
| intron-5UTR | ENST00000576436 | ENST00000546206 | RPS15A | chr16 | 18796060 | - | ARL6IP1 | chr16 | 18810156 | - |
| intron-5UTR | ENST00000576436 | ENST00000562819 | RPS15A | chr16 | 18796060 | - | ARL6IP1 | chr16 | 18810156 | - |
| Frame-shift | ENST00000565420 | ENST00000304414 | RPS15A | chr16 | 18796060 | - | ARL6IP1 | chr16 | 18810156 | - |
| 5CDS-5UTR | ENST00000565420 | ENST00000546206 | RPS15A | chr16 | 18796060 | - | ARL6IP1 | chr16 | 18810156 | - |
| 5CDS-5UTR | ENST00000565420 | ENST00000562819 | RPS15A | chr16 | 18796060 | - | ARL6IP1 | chr16 | 18810156 | - |
| intron-3CDS | ENST00000569083 | ENST00000304414 | RPS15A | chr16 | 18796060 | - | ARL6IP1 | chr16 | 18810156 | - |
| intron-5UTR | ENST00000569083 | ENST00000546206 | RPS15A | chr16 | 18796060 | - | ARL6IP1 | chr16 | 18810156 | - |
| intron-5UTR | ENST00000569083 | ENST00000562819 | RPS15A | chr16 | 18796060 | - | ARL6IP1 | chr16 | 18810156 | - |
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FusionProtFeatures for RPS15A_ARL6IP1 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| RPS15A | ARL6IP1 |
| Positively regulates SLC1A1/EAAC1-mediated glutamatetransport by increasing its affinity for glutamate in a PKCactivity-dependent manner. Promotes the catalytic efficiency ofSLC1A1/EAAC1 probably by reducing its interaction with ARL6IP5, anegative regulator of SLC1A1/EAAC1-mediated glutamate transport(By similarity). Plays a role in the formation and stabilizationof endoplasmic reticulum tubules (PubMed:24262037). Negativelyregulates apoptosis, possibly by modulating the activity ofcaspase-9 (CASP9). Inhibits cleavage of CASP9-dependent substratesand downstream markers of apoptosis but not CASP9 itself(PubMed:12754298). May be involved in protein transport, membranetrafficking, or cell signaling during hematopoietic maturation(PubMed:10995579). {ECO:0000250|UniProtKB:Q9JKW0,ECO:0000269|PubMed:12754298, ECO:0000269|PubMed:24262037,ECO:0000303|PubMed:10995579}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for RPS15A_ARL6IP1 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for RPS15A_ARL6IP1 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| RPS15A | EWSR1, ELF5, MGMT, CALM1, CDC37, PCK1, VHL, RAD21, HDGF, CUL3, CUL4A, CUL5, CUL2, CDK2, CUL1, COPS5, COPS6, CAND1, NEDD8, RPL10A, RPL10, RPL11, RPL12, RPL14, RPL15, RPL18A, RPL18, RPL19, RPL21, RPL23, RPL24, RPL27, RPL30, RPL31, RPL37A, RPL4, RPL5, RPL6, RPL7A, RPL7, RPL9, RPS10, RPS11, RPS12, RPS13, RPS14, RPS19, RPS26, RPS3A, RPS3, RPS4X, RPS5, RPS6, RPS7, RPS8, RPSA, RPS23, RPS16, RPS17, RPLP1, RPS24, RPLP2, RPL23A, RPS2, RPLP0, RPS20, RPS15, RPL3, RPL13, RPL38, RPL29, RPS21, RPL17, RPL32, RPS27A, EEF1A1, EEF2, NOP56, FBL, HNRNPU, GNL3, SLC25A5, ILF3, ILF2, NOP58, MOV10, TUFM, NHP2L1, HNRNPM, ACTA2, EIF6, HSP90AA1, RPLP0P6, RPL10L, GALNT2, NOP2, NIFK, MRPS14, UBA2, GNL1, HIST1H2AD, HSPA8, ATP5A1, HNRNPA0, PSMB1, ESR1, SMURF1, FN1, VCAM1, UBL4A, ITGA4, PAN2, PSMC1, PSMC6, PSMD11, PSMD3, FAU, PNO1, PSMD1, RPS18, RPS25, RPS27, RPS27L, RPS29, RPS9, WDR26, WIBG, RPS28, TSR1, ZBTB1, CEP250, CEP57, CEP76, TUBG1, HUWE1, RNF2, EGFR, DIMT1, IMP3, MPHOSPH10, MRPL14, MRPL16, MRPL22, MRPS7, RPL13A, RPL27A, RPL28, RPL34, RPL35, RPL37, DDX18, RPL22, RPL35A, RPL36, RPL8, VAPA, LOC101929876, TUBB, TUBB2B, TUBB4B, UBA52, SFN, PTEN, AHSA1, EXOSC1, UBE3A, MCM2, RHOU, RC3H1, ZNF746, HNRNPA1, CYLD, TRIM25, UBE2A, HEY1, BRCA1, HDAC6 | ARL6IP1 | ARL6, INPP5K, FXR2, FBXW7, FDFT1, HGS, NUDT3, HMGCL, ELAVL1, GAD2, PBX3, SHMT2, SNX1, TFAM, TUFM, SNX4, SNX3, SUCLA2, RAB33A, COL4A3BP, ARL6IP1, GORASP2, WIPI2, SNX10, SNX15, SNX11, SNX12, MTERF3, PAM16, SPG21, DIABLO, RTN4, SENP2, C12orf10, NAPB, GOLPH3, NDRG4, ZFYVE21, ACSF2, FAM134C, ZNF391, FAF2, UNK, GOLPH3L, ATP2B2, IPPK, FPR2, LMNA |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for RPS15A_ARL6IP1 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for RPS15A_ARL6IP1 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Tgene | ARL6IP1 | C0033578 | Prostatic Neoplasms | 1 | CTD_human |
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