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Fusion gene ID: 31893 |
FusionGeneSummary for RPL34_PCCB |
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Fusion gene information | Fusion gene name: RPL34_PCCB | Fusion gene ID: 31893 | Hgene | Tgene | Gene symbol | RPL34 | PCCB | Gene ID | 6164 | 5096 |
Gene name | ribosomal protein L34 | propionyl-CoA carboxylase subunit beta | |
Synonyms | L34 | - | |
Cytomap | 4q25 | 3q22.3 | |
Type of gene | protein-coding | protein-coding | |
Description | 60S ribosomal protein L34large ribosomal subunit protein eL34leukemia-associated protein | propionyl-CoA carboxylase beta chain, mitochondrialPCCase subunit betapropanoyl-CoA:carbon dioxide ligase subunit betapropionyl CoA carboxylase, beta polypeptidepropionyl Coenzyme A carboxylase, beta polypeptidepropionyl-CoA carboxylase beta subunit | |
Modification date | 20180522 | 20180522 | |
UniProtAcc | P49207 | P05166 | |
Ensembl transtripts involved in fusion gene | ENST00000394667, ENST00000502534, ENST00000394665, ENST00000506397, ENST00000394668, | ENST00000471595, ENST00000478469, ENST00000251654, ENST00000483687, ENST00000490504, ENST00000466072, ENST00000482086, ENST00000468777, ENST00000462637, ENST00000469217, ENST00000474833, | |
Fusion gene scores | * DoF score | 4 X 4 X 2=32 | 9 X 6 X 7=378 |
# samples | 4 | 11 | |
** MAII score | log2(4/32*10)=0.321928094887362 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(11/378*10)=-1.78088271069641 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: RPL34 [Title/Abstract] AND PCCB [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | AU126976 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-intron | ENST00000394667 | ENST00000471595 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-intron | ENST00000394667 | ENST00000478469 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-5UTR | ENST00000394667 | ENST00000251654 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-5UTR | ENST00000394667 | ENST00000483687 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-5UTR | ENST00000394667 | ENST00000490504 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-5UTR | ENST00000394667 | ENST00000466072 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-5UTR | ENST00000394667 | ENST00000482086 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-5UTR | ENST00000394667 | ENST00000468777 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-5UTR | ENST00000394667 | ENST00000462637 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-intron | ENST00000394667 | ENST00000469217 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-intron | ENST00000394667 | ENST00000474833 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-intron | ENST00000502534 | ENST00000471595 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-intron | ENST00000502534 | ENST00000478469 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-5UTR | ENST00000502534 | ENST00000251654 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-5UTR | ENST00000502534 | ENST00000483687 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-5UTR | ENST00000502534 | ENST00000490504 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-5UTR | ENST00000502534 | ENST00000466072 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-5UTR | ENST00000502534 | ENST00000482086 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-5UTR | ENST00000502534 | ENST00000468777 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-5UTR | ENST00000502534 | ENST00000462637 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-intron | ENST00000502534 | ENST00000469217 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-intron | ENST00000502534 | ENST00000474833 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-intron | ENST00000394665 | ENST00000471595 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-intron | ENST00000394665 | ENST00000478469 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-5UTR | ENST00000394665 | ENST00000251654 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-5UTR | ENST00000394665 | ENST00000483687 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-5UTR | ENST00000394665 | ENST00000490504 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-5UTR | ENST00000394665 | ENST00000466072 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-5UTR | ENST00000394665 | ENST00000482086 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-5UTR | ENST00000394665 | ENST00000468777 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-5UTR | ENST00000394665 | ENST00000462637 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-intron | ENST00000394665 | ENST00000469217 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-intron | ENST00000394665 | ENST00000474833 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-intron | ENST00000506397 | ENST00000471595 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-intron | ENST00000506397 | ENST00000478469 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-5UTR | ENST00000506397 | ENST00000251654 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-5UTR | ENST00000506397 | ENST00000483687 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-5UTR | ENST00000506397 | ENST00000490504 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-5UTR | ENST00000506397 | ENST00000466072 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-5UTR | ENST00000506397 | ENST00000482086 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-5UTR | ENST00000506397 | ENST00000468777 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-5UTR | ENST00000506397 | ENST00000462637 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-intron | ENST00000506397 | ENST00000469217 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-intron | ENST00000506397 | ENST00000474833 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-intron | ENST00000394668 | ENST00000471595 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-intron | ENST00000394668 | ENST00000478469 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-5UTR | ENST00000394668 | ENST00000251654 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-5UTR | ENST00000394668 | ENST00000483687 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-5UTR | ENST00000394668 | ENST00000490504 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-5UTR | ENST00000394668 | ENST00000466072 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-5UTR | ENST00000394668 | ENST00000482086 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-5UTR | ENST00000394668 | ENST00000468777 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-5UTR | ENST00000394668 | ENST00000462637 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-intron | ENST00000394668 | ENST00000469217 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
5CDS-intron | ENST00000394668 | ENST00000474833 | RPL34 | chr4 | 109543328 | + | PCCB | chr3 | 135969191 | + |
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FusionProtFeatures for RPL34_PCCB |
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Hgene | Tgene |
RPL34 | PCCB |
Component of the large ribosomal subunit.{ECO:0000269|PubMed:23636399, ECO:0000269|PubMed:25901680,ECO:0000269|PubMed:25957688, ECO:0000305|PubMed:12962325}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for RPL34_PCCB |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for RPL34_PCCB |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for RPL34_PCCB |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Tgene | PCCB | P05166 | DB00121 | Biotin | Propionyl-CoA carboxylase beta chain, mitochondrial | small molecule | approved|investigational|nutraceutical |
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RelatedDiseases for RPL34_PCCB |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | PCCB | C0268579 | Propionic acidemia | 5 | CTD_human;HPO;ORPHANET;UNIPROT |