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Fusion gene ID: 31865 |
FusionGeneSummary for RPL28_GSE1 |
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Fusion gene information | Fusion gene name: RPL28_GSE1 | Fusion gene ID: 31865 | Hgene | Tgene | Gene symbol | RPL28 | GSE1 | Gene ID | 6158 | 23199 |
Gene name | ribosomal protein L28 | Gse1 coiled-coil protein | |
Synonyms | L28 | CRHSP24|KIAA0182 | |
Cytomap | 19q13.42 | 16q24.1 | |
Type of gene | protein-coding | protein-coding | |
Description | 60S ribosomal protein L28large ribosomal subunit protein eL28 | genetic suppressor element 1CTC-786C10.1Gse1 coiled-coil protein homolog | |
Modification date | 20180525 | 20180519 | |
UniProtAcc | P46779 | Q14687 | |
Ensembl transtripts involved in fusion gene | ENST00000344063, ENST00000431533, ENST00000428193, ENST00000558815, ENST00000560583, ENST00000560055, ENST00000559463, ENST00000558131, ENST00000558752, ENST00000458349, | ENST00000405402, ENST00000253458, ENST00000393243, ENST00000471070, | |
Fusion gene scores | * DoF score | 9 X 9 X 2=162 | 7 X 7 X 5=245 |
# samples | 11 | 7 | |
** MAII score | log2(11/162*10)=-0.558490289359965 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(7/245*10)=-1.8073549220576 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: RPL28 [Title/Abstract] AND GSE1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | LUSC | TCGA-94-8491-01A | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-intron | ENST00000344063 | ENST00000405402 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000344063 | ENST00000253458 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000344063 | ENST00000393243 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000344063 | ENST00000471070 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000431533 | ENST00000405402 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000431533 | ENST00000253458 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000431533 | ENST00000393243 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000431533 | ENST00000471070 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000428193 | ENST00000405402 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000428193 | ENST00000253458 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000428193 | ENST00000393243 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000428193 | ENST00000471070 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000558815 | ENST00000405402 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000558815 | ENST00000253458 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000558815 | ENST00000393243 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000558815 | ENST00000471070 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000560583 | ENST00000405402 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000560583 | ENST00000253458 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000560583 | ENST00000393243 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000560583 | ENST00000471070 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000560055 | ENST00000405402 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000560055 | ENST00000253458 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000560055 | ENST00000393243 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000560055 | ENST00000471070 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000559463 | ENST00000405402 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000559463 | ENST00000253458 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000559463 | ENST00000393243 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000559463 | ENST00000471070 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000558131 | ENST00000405402 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000558131 | ENST00000253458 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000558131 | ENST00000393243 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000558131 | ENST00000471070 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000558752 | ENST00000405402 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000558752 | ENST00000253458 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000558752 | ENST00000393243 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000558752 | ENST00000471070 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000458349 | ENST00000405402 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000458349 | ENST00000253458 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000458349 | ENST00000393243 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
5CDS-intron | ENST00000458349 | ENST00000471070 | RPL28 | chr19 | 55897806 | + | GSE1 | chr16 | 85391069 | + |
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FusionProtFeatures for RPL28_GSE1 |
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Hgene | Tgene |
RPL28 | GSE1 |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for RPL28_GSE1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for RPL28_GSE1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
RPL28 | MAGEB2, UBC, DCC, ARRB2, TDRD3, CUL2, CDK2, CUL1, COPS5, CAND1, ESR1, MAGOH, EIF4A3, PA2G4, FN1, SMAD4, UBL4A, ITGA4, PAN2, MAP2K5, FBXO6, TARDBP, GTF2I, RPL8, RPS10, RPS18, RPS19, RPS23, RPS29, RPS2, RPS3A, RPS3, GRSF1, TP53, PCSK9, CCNDBP1, BRCA1, CCDC8, RNF2, RPL23A, RPL13, RPL14, RPL19, RPL21, RPL23, RPL3, RPL34, RPL36, RPL5, RPL7, RPLP0, RPS11, RPS14, RPS15, RPS15A, RPS16, RPS25, RPL35, RPL38, RPLP1, RPLP2, RPS6, XPO1, HNRNPU, KIF11, MCM2, RC3H1, C3orf17, ZNF746, HIST1H1D, HIST1H1A, HIST1H1C, PTPRK, KLHL21, FAT4, ZDBF2, GSG2, FAT3, SIPA1L2, KIAA0020, TRO, KIAA0232, CDC42BPA, TUBB3, RPL18A, IFFO1, RRP8, CELSR2, FREM2, RBM34, AKAP11, PLCH1, RPL4, RPL26L1, PPAN-P2RY11, POLE2, GLYR1, ZNF354A, WHSC1, ZCCHC7, C1QBP, FTSJ3, POLE, ZNF644, BRIX1, RPL32, PTPRD, RPL30, RPL27, TUBA4A, DKC1, RPL18, GPR98, RPL6, ZNF184, CENPU, GPRASP2, RBM28, SDCBP, RPL7A, PEX14, ZNF865, KLHL15, RPS8, NCL, CYLD, INO80B, COX15, DNM1L, PDHA1, SOAT1, VDAC1, FOXA1, TRIM25, MTF1 | GSE1 | NUDT18, RBPMS, RCOR3, HDAC2, KDM1A, RBM48, XRCC6, NR2E1, CDC5L, CEP63, TNIK, ELAVL1, TCF3, FUS, HDAC1, MTA3, EXOSC6, DGCR6, RUNX1T1, GOLGA2, TRIP6, RALBP1, GSE1, C1orf94, TEKT4, C6orf165, SNAI1, HMG20B, FGF1, DOK4, NTRK1, SRPK2, NINL, MAPK3, HMG20A, TCF4, EYA2, LLGL2, HAO2, FAM136A, NR3C1, AR, TRIM25 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for RPL28_GSE1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for RPL28_GSE1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | RPL28 | C0043094 | Weight Gain | 1 | CTD_human |