![]() |
||||||
|
![]() | |
![]() | |
![]() | |
![]() | |
![]() | |
![]() |
Fusion gene ID: 31851 |
FusionGeneSummary for RPL24_SLC9A9 |
![]() |
Fusion gene information | Fusion gene name: RPL24_SLC9A9 | Fusion gene ID: 31851 | Hgene | Tgene | Gene symbol | RPL24 | SLC9A9 | Gene ID | 51187 | 285195 |
Gene name | ribosomal L24 domain containing 1 | solute carrier family 9 member A9 | |
Synonyms | C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3 | AUTS16|NHE9 | |
Cytomap | 15q21.3 | 3q24 | |
Type of gene | protein-coding | protein-coding | |
Description | probable ribosome biogenesis protein RLP2460S ribosomal protein L30 isologhomolog of yeast ribosomal like protein 24my024 proteinribosomal L24 domain-containing protein 1 | sodium/hydrogen exchanger 9Na(+)/H(+) exchanger 9putative protein product of Nbla00118sodium/proton exchanger NHE9solute carrier family 9 (sodium/hydrogen exchanger)solute carrier family 9, subfamily A (NHE9, cation proton antiporter 9), member 9 | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | P83731 | Q8IVB4 | |
Ensembl transtripts involved in fusion gene | ENST00000394077, ENST00000495401, ENST00000469605, | ENST00000316549, ENST00000498717, | |
Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 7 X 7 X 5=245 |
# samples | 1 | 7 | |
** MAII score | log2(1/1*10)=3.32192809488736 | log2(7/245*10)=-1.8073549220576 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: RPL24 [Title/Abstract] AND SLC9A9 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
![]() |
Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | LUSC | TCGA-18-3421-01A | RPL24 | chr3 | 101401273 | - | SLC9A9 | chr3 | 143214290 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000394077 | ENST00000316549 | RPL24 | chr3 | 101401273 | - | SLC9A9 | chr3 | 143214290 | - |
5CDS-intron | ENST00000394077 | ENST00000498717 | RPL24 | chr3 | 101401273 | - | SLC9A9 | chr3 | 143214290 | - |
intron-3CDS | ENST00000495401 | ENST00000316549 | RPL24 | chr3 | 101401273 | - | SLC9A9 | chr3 | 143214290 | - |
intron-intron | ENST00000495401 | ENST00000498717 | RPL24 | chr3 | 101401273 | - | SLC9A9 | chr3 | 143214290 | - |
intron-3CDS | ENST00000469605 | ENST00000316549 | RPL24 | chr3 | 101401273 | - | SLC9A9 | chr3 | 143214290 | - |
intron-intron | ENST00000469605 | ENST00000498717 | RPL24 | chr3 | 101401273 | - | SLC9A9 | chr3 | 143214290 | - |
Top |
FusionProtFeatures for RPL24_SLC9A9 |
![]() |
Hgene | Tgene |
RPL24 | SLC9A9 |
May act in electroneutral exchange of protons for Na(+)across membranes. Involved in the effusion of Golgi luminal H(+)in exchange for cytosolic cations. Involved in organelle ionhomeostasis by contributing to the maintenance of the uniqueacidic pH values of the Golgi and post-Golgi compartments in thecell. {ECO:0000269|PubMed:15522866}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | >SLC9A9 | chr3:101401273 | chr3:143214290 | ENST00000316549 | - | 8 | 16 | 365_385 | 363 | 646 | Transmembrane | Helical |
Tgene | >SLC9A9 | chr3:101401273 | chr3:143214290 | ENST00000316549 | - | 8 | 16 | 387_407 | 363 | 646 | Transmembrane | Helical |
Tgene | >SLC9A9 | chr3:101401273 | chr3:143214290 | ENST00000316549 | - | 8 | 16 | 430_450 | 363 | 646 | Transmembrane | Helical |
Tgene | >SLC9A9 | chr3:101401273 | chr3:143214290 | ENST00000316549 | - | 8 | 16 | 466_486 | 363 | 646 | Transmembrane | Helical |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | SLC9A9 | chr3:101401273 | chr3:143214290 | ENST00000316549 | - | 8 | 16 | 127_147 | 363 | 646 | Transmembrane | Helical |
Tgene | SLC9A9 | chr3:101401273 | chr3:143214290 | ENST00000316549 | - | 8 | 16 | 165_185 | 363 | 646 | Transmembrane | Helical |
Tgene | SLC9A9 | chr3:101401273 | chr3:143214290 | ENST00000316549 | - | 8 | 16 | 204_224 | 363 | 646 | Transmembrane | Helical |
Tgene | SLC9A9 | chr3:101401273 | chr3:143214290 | ENST00000316549 | - | 8 | 16 | 21_41 | 363 | 646 | Transmembrane | Helical |
Tgene | SLC9A9 | chr3:101401273 | chr3:143214290 | ENST00000316549 | - | 8 | 16 | 236_256 | 363 | 646 | Transmembrane | Helical |
Tgene | SLC9A9 | chr3:101401273 | chr3:143214290 | ENST00000316549 | - | 8 | 16 | 278_298 | 363 | 646 | Transmembrane | Helical |
Tgene | SLC9A9 | chr3:101401273 | chr3:143214290 | ENST00000316549 | - | 8 | 16 | 302_322 | 363 | 646 | Transmembrane | Helical |
Tgene | SLC9A9 | chr3:101401273 | chr3:143214290 | ENST00000316549 | - | 8 | 16 | 323_343 | 363 | 646 | Transmembrane | Helical |
Tgene | SLC9A9 | chr3:101401273 | chr3:143214290 | ENST00000316549 | - | 8 | 16 | 46_66 | 363 | 646 | Transmembrane | Helical |
Top |
FusionGeneSequence for RPL24_SLC9A9 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_RPL24_ENST00000394077_chr3_101401273_-_SLC9A9_ENST00000316549_chr3_143214290_-_414aa MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADI MAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKLFEFMNFLAENVIFCYMGLALFTFQNHIFNALFILGAFLAIFVARACNI YPLSFLLNLGRKQKIPWNFQHMMMFSGLRGAIAFALAIRNTESQPKQMMFTTTLLLVFFTVWVFGGGTTPMLTWLQIRVGVDLDENLKED PSSQHQEANNLDKNMTKAESARLFRMWYSFDHKYLKPILTHSGPPLTTTLPEWCGPISRLLTSPQAYGEQLKEDDVECIVNQDELAINYQ |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_RPL24_ENST00000394077_chr3_101401273_-_SLC9A9_ENST00000316549_chr3_143214290_-_1242nt ATGAAGGTCGAGCTGTGCAGTTTTAGCGGGTACAAGATCTACCCCGGACACGGGAGGCGCTACGCCAGGACCGACGGGAAGGTTTTCCAG TTTCTTAATGCGAAATGCGAGTCGGCTTTCCTTTCCAAGAGGAATCCTCGGCAGATAAACTGGACTGTCCTCTACAGAAGGAAGCACAAA AAGGGACAGTCGGAAGAAATTCAAAAGAAAAGAACCCGCCGAGCAGTCAAATTCCAGAGGGCCATTACTGGTGCATCTCTTGCTGATATA ATGGCCAAGAGGAATCAGAAACCTGAAGTTAGAAAGGCTCAACGAGAACAAGCTATCAGGGCTGCTAAGGAAGCAAAAAAGGCTAAGCAA GCATCTAAAAAGACTGCAATGGCTGCTGCTAAGTTGTTTGAATTTATGAACTTTTTGGCGGAGAACGTCATCTTCTGTTACATGGGCCTG GCACTGTTCACGTTCCAGAATCATATCTTTAATGCTCTTTTTATACTTGGAGCCTTTCTAGCAATTTTTGTTGCCAGAGCCTGCAACATA TATCCCCTCTCCTTCCTCCTGAATCTAGGCCGAAAACAGAAGATCCCCTGGAACTTTCAGCACATGATGATGTTTTCAGGTTTGCGAGGA GCGATCGCATTTGCCTTAGCTATTCGGAACACAGAATCTCAGCCCAAACAAATGATGTTTACCACTACGCTGCTCCTCGTGTTCTTCACT GTCTGGGTATTTGGAGGAGGAACAACCCCCATGTTGACTTGGCTTCAGATCAGAGTTGGCGTGGACCTGGATGAAAATCTGAAGGAGGAC CCCTCCTCACAACACCAGGAAGCAAATAACTTGGATAAAAACATGACGAAAGCAGAGAGTGCTCGGCTCTTCAGAATGTGGTATAGCTTT GACCACAAGTATCTGAAACCAATTTTAACCCACTCTGGTCCTCCGCTGACTACAACATTACCTGAATGGTGTGGTCCGATTTCCAGGCTG CTTACCAGTCCTCAAGCCTATGGGGAACAGCTAAAAGAGGATGATGTGGAATGCATTGTAAACCAGGATGAACTAGCCATAAATTACCAG GAGCAAGCCTCCTCACCCTGCAGTCCTCCTGCAAGGCTAGGTCTGGACCAGAAAGCTTCACCCCAGACGCCAGGCAAGGAAAACATTTAT |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_RPL24_ENST00000394077_chr3_101401273_-_SLC9A9_ENST00000316549_chr3_143214290_-_2828nt GGGGAGGAGATTTCCGGCCCCCATCCCCGCAGCGACCTTATAAGGTCTCTTCCCATGATTCTCTCTTTCTTTTCGCCATCTTTTGTCTTT CCGTGGAGCTGTCGCCATGAAGGTCGAGCTGTGCAGTTTTAGCGGGTACAAGATCTACCCCGGACACGGGAGGCGCTACGCCAGGACCGA CGGGAAGGTTTTCCAGTTTCTTAATGCGAAATGCGAGTCGGCTTTCCTTTCCAAGAGGAATCCTCGGCAGATAAACTGGACTGTCCTCTA CAGAAGGAAGCACAAAAAGGGACAGTCGGAAGAAATTCAAAAGAAAAGAACCCGCCGAGCAGTCAAATTCCAGAGGGCCATTACTGGTGC ATCTCTTGCTGATATAATGGCCAAGAGGAATCAGAAACCTGAAGTTAGAAAGGCTCAACGAGAACAAGCTATCAGGGCTGCTAAGGAAGC AAAAAAGGCTAAGCAAGCATCTAAAAAGACTGCAATGGCTGCTGCTAAGTTGTTTGAATTTATGAACTTTTTGGCGGAGAACGTCATCTT CTGTTACATGGGCCTGGCACTGTTCACGTTCCAGAATCATATCTTTAATGCTCTTTTTATACTTGGAGCCTTTCTAGCAATTTTTGTTGC CAGAGCCTGCAACATATATCCCCTCTCCTTCCTCCTGAATCTAGGCCGAAAACAGAAGATCCCCTGGAACTTTCAGCACATGATGATGTT TTCAGGTTTGCGAGGAGCGATCGCATTTGCCTTAGCTATTCGGAACACAGAATCTCAGCCCAAACAAATGATGTTTACCACTACGCTGCT CCTCGTGTTCTTCACTGTCTGGGTATTTGGAGGAGGAACAACCCCCATGTTGACTTGGCTTCAGATCAGAGTTGGCGTGGACCTGGATGA AAATCTGAAGGAGGACCCCTCCTCACAACACCAGGAAGCAAATAACTTGGATAAAAACATGACGAAAGCAGAGAGTGCTCGGCTCTTCAG AATGTGGTATAGCTTTGACCACAAGTATCTGAAACCAATTTTAACCCACTCTGGTCCTCCGCTGACTACAACATTACCTGAATGGTGTGG TCCGATTTCCAGGCTGCTTACCAGTCCTCAAGCCTATGGGGAACAGCTAAAAGAGGATGATGTGGAATGCATTGTAAACCAGGATGAACT AGCCATAAATTACCAGGAGCAAGCCTCCTCACCCTGCAGTCCTCCTGCAAGGCTAGGTCTGGACCAGAAAGCTTCACCCCAGACGCCAGG CAAGGAAAACATTTATGAGGGAGACCTCGGCCTGGGAGGCTATGAACTCAAGCTTGAGCAAACTTTGGGTCAATCCCAGTTGAATTAATT GGCATGAAGAGTACAGATGTAATCACAAGTAATGCAAGACTCACTGAGGAATACAAGCCAAGCTGATGAGGCAGTACAGGGGAGAGGCTG GAAAACATATTAAGAGCATAAATTGGAGAGAATCAAAGCCTTGTCACATGGATCCTCTGGTGCCTGAAGAAATGAGATTTTATTATCCCT CTCTATTATGCAAATGAATTTAGTTTTTTGACAGCAGCCATTCTGATTACTGGATTGGCTGGGGTGGGGATGGAGGTATCAGGAGTCTAG CTGCTGGAGGATGGGACAGCTGTGCTGGGTCTTCAGGGCATTTCTGCTGCGAATGCGGCTCTCCAGGCCCTTCACTTCTATTCTGGATTT TATTCCCTCCATTAAGGAGAGTTTAAAAATAAAAGAAAGCTTCTGAGAGTAAACATTTTGCTCCTAAGCTGAAGGGAATGCCCAGCTATT TAGTAAGTGATAAGTTTCTTATTTTGAGGACTTGACTCCCATTTGCTCTCAGTGACCCCAGGGCAGAGCCCAGAGAAGTGTTCCGTACCC ACTGCTGATGGTTTCCCAGAGCCCACACTGAGTTGAAGAACCTATTGTTCTTCTTGGCATCCTTCTTATGCTACTTCTCCCATCGCTCAA AGGGGTTGCCTATGGCTGGGTGTGCCCTGCCCTAAATGCAGCACCACTTTCAAGCTTAGTAGGACCATTCCAAGAAAACCAGGTTTCTTC TCCCCATACCACGTTGTGCCTGAAGAACAAGCCTTCCCGTCCTTGCCTGCATGTGAGTCACTTCTTGGCTGTGCAGCAGGTCCCCCCCTC CCCGCGATATGCTGGAGGGTAGGATTCTGCAGCCTGTGTTGCTCTCTACCTGGCAGCAGACTGTGCAGGAGCCCCAACCTGTCCTCCAAT TCCAGCATTCACAGCTGATGAGCAGTGCAGGAGCAGGGCGAGAGGAACAGAGCCAATGATGTGTGGGTTACACTGAGGAGCCAAGGACAG GGCCTCAGGTCTCCCCCTTACAAGGCGTGGCTCATGGCCTGCATTCCAGAGACCAACATGATAGCTTTTAATTCAGCTGCATGACCTGTG CCTTTTAAGCCATAAAGATACCTCAAGCCTAGCACCTCTTGAAATCCAGATGTTCATATTAGACTCGAAAAAATAGGCTCCAGGCCTAGG TGCCCAGGCTATGATGAGTCTGCTTTTGAAGGAGGTAGGGAATGACATCTTCCTTGGACCCAAAGCTTAAAAGTAATGTATGCTTTGCTG ACCACTGTTTGTTAGGCCTTAAACAACATTCACTGTGGTGGTATCAGGCACACTGCTATGTGCATCAATTATTTTTTTGCTTTCCAAACA GAATCTCTGGGGCACAAGTTTTACACTCAAGCTAAGTATAACTTTGTCATTTCAGGTAAATATGACAAGTGGTGGAGCATGAAGTTTTCT |
Top |
FusionGenePPI for RPL24_SLC9A9 |
![]() |
![]() |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
RPL24 | POU5F1, AGO4, NDRG1, TCF3, ISG15, CUL3, CUL4B, CUL5, CUL2, CUL1, COPS5, COPS6, CAND1, RPL10A, RPL11, RPL12, RPL13, RPL14, RPL15, RPL18A, RPL18, RPL19, RPL21, RPL22, RPL23A, RPL23, RPL31, RPL37A, RPL4, RPL5, RPL6, RPL7, RPL9, RPS11, RPS13, RPS15A, RPS16, RPS17, RPS20, RPS23, RPS25, RPS28, RPS2, RPS3A, RPS3, RPS4X, RPS5, RPS6, RPS8, RPSA, RPL27A, RPL7A, RPS19, RPS26, RPS12, RPS24, RPL17, RPS21, EEF1A1, RPS27A, ILF3, NPM1, NCL, RPS27L, RPL10L, RPLP0P6, RPS10P5, CHCHD2, TIMM13, STRAP, PSMB1, ESR1, MAGOH, EIF4A3, SMURF1, TRAF3IP1, FN1, VCAM1, TP63, UBL4A, PAN2, CD81, IGSF8, ICAM1, LSM8, HECW2, HIRIP3, OXR1, PURB, RANBP3, EEF1E1, FAF1, FARSB, GART, HIST1H4A, IARS, NARS, PLOD2, RPLP0, SAMHD1, SRSF6, TROVE2, XRCC5, SF1, SYNCRIP, VPS35, ZBTB1, STAU1, CEP250, CEP76, TP53, TUBG1, TUBGCP3, VCP, EED, RNF2, LUZP4, NAP1L1, RPS6KB2, RPL10, RPL13A, RPL3, RPL34, RPL8, RRP7A, RPL26, RPL27, RPL30, RPL32, RPL35, RPL35A, RPL36, RPL38, RPL3L, RPLP1, RPLP2, RPS10, RPS14, RPS15, RPS18, LOC101929876, RPS27, RPS7, RPS9, UBA52, SFN, XPO1, HIST1H3E, HNRNPU, NOP56, MPHOSPH8, MCM2, RC3H1, CDH1, DEFA5, INO80B, BRCA1, YAP1 | SLC9A9 | ZDHHC17, TP53 |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for RPL24_SLC9A9 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for RPL24_SLC9A9 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | SLC9A9 | C0004352 | Autistic Disorder | 1 | CTD_human |