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Fusion gene ID: 3181 |
FusionGeneSummary for ATG3_KCNIP4 |
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Fusion gene information | Fusion gene name: ATG3_KCNIP4 | Fusion gene ID: 3181 | Hgene | Tgene | Gene symbol | ATG3 | KCNIP4 | Gene ID | 64422 | 80333 |
Gene name | autophagy related 3 | potassium voltage-gated channel interacting protein 4 | |
Synonyms | APG3|APG3-LIKE|APG3L|PC3-96 | CALP|KCHIP4 | |
Cytomap | 3q13.2 | 4p15.31-p15.2 | |
Type of gene | protein-coding | protein-coding | |
Description | ubiquitin-like-conjugating enzyme ATG32610016C12RikAPG3 autophagy 3-likeATG3 autophagy related 3 homologautophagy-related protein 3hApg3 | Kv channel-interacting protein 4Kv channel interacting protein 4a-type potassium channel modulatory protein 4calsenilin-like protein | |
Modification date | 20180526 | 20180523 | |
UniProtAcc | Q9NT62 | Q6PIL6 | |
Ensembl transtripts involved in fusion gene | ENST00000283290, ENST00000402314, ENST00000495756, | ENST00000382148, ENST00000447367, ENST00000382150, ENST00000382152, ENST00000509207, ENST00000382149, ENST00000359001, | |
Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 12 X 7 X 9=756 |
# samples | 2 | 13 | |
** MAII score | log2(2/1*10)=4.32192809488736 | log2(13/756*10)=-2.53987461119262 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: ATG3 [Title/Abstract] AND KCNIP4 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | ATG3 | GO:0006464 | cellular protein modification process | 11825910 |
Hgene | ATG3 | GO:0016567 | protein ubiquitination | 11825910 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | AW386111 | ATG3 | chr3 | 112260688 | + | KCNIP4 | chr4 | 21235057 | - | ||
ChiTaRS3.1 | AW386112 | ATG3 | chr3 | 112260688 | + | KCNIP4 | chr4 | 21235057 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-intron | ENST00000283290 | ENST00000382148 | ATG3 | chr3 | 112260688 | + | KCNIP4 | chr4 | 21235057 | - |
intron-intron | ENST00000283290 | ENST00000447367 | ATG3 | chr3 | 112260688 | + | KCNIP4 | chr4 | 21235057 | - |
intron-intron | ENST00000283290 | ENST00000382150 | ATG3 | chr3 | 112260688 | + | KCNIP4 | chr4 | 21235057 | - |
intron-intron | ENST00000283290 | ENST00000382152 | ATG3 | chr3 | 112260688 | + | KCNIP4 | chr4 | 21235057 | - |
intron-intron | ENST00000283290 | ENST00000509207 | ATG3 | chr3 | 112260688 | + | KCNIP4 | chr4 | 21235057 | - |
intron-intron | ENST00000283290 | ENST00000382149 | ATG3 | chr3 | 112260688 | + | KCNIP4 | chr4 | 21235057 | - |
intron-intron | ENST00000283290 | ENST00000359001 | ATG3 | chr3 | 112260688 | + | KCNIP4 | chr4 | 21235057 | - |
intron-intron | ENST00000402314 | ENST00000382148 | ATG3 | chr3 | 112260688 | + | KCNIP4 | chr4 | 21235057 | - |
intron-intron | ENST00000402314 | ENST00000447367 | ATG3 | chr3 | 112260688 | + | KCNIP4 | chr4 | 21235057 | - |
intron-intron | ENST00000402314 | ENST00000382150 | ATG3 | chr3 | 112260688 | + | KCNIP4 | chr4 | 21235057 | - |
intron-intron | ENST00000402314 | ENST00000382152 | ATG3 | chr3 | 112260688 | + | KCNIP4 | chr4 | 21235057 | - |
intron-intron | ENST00000402314 | ENST00000509207 | ATG3 | chr3 | 112260688 | + | KCNIP4 | chr4 | 21235057 | - |
intron-intron | ENST00000402314 | ENST00000382149 | ATG3 | chr3 | 112260688 | + | KCNIP4 | chr4 | 21235057 | - |
intron-intron | ENST00000402314 | ENST00000359001 | ATG3 | chr3 | 112260688 | + | KCNIP4 | chr4 | 21235057 | - |
intron-intron | ENST00000495756 | ENST00000382148 | ATG3 | chr3 | 112260688 | + | KCNIP4 | chr4 | 21235057 | - |
intron-intron | ENST00000495756 | ENST00000447367 | ATG3 | chr3 | 112260688 | + | KCNIP4 | chr4 | 21235057 | - |
intron-intron | ENST00000495756 | ENST00000382150 | ATG3 | chr3 | 112260688 | + | KCNIP4 | chr4 | 21235057 | - |
intron-intron | ENST00000495756 | ENST00000382152 | ATG3 | chr3 | 112260688 | + | KCNIP4 | chr4 | 21235057 | - |
intron-intron | ENST00000495756 | ENST00000509207 | ATG3 | chr3 | 112260688 | + | KCNIP4 | chr4 | 21235057 | - |
intron-intron | ENST00000495756 | ENST00000382149 | ATG3 | chr3 | 112260688 | + | KCNIP4 | chr4 | 21235057 | - |
intron-intron | ENST00000495756 | ENST00000359001 | ATG3 | chr3 | 112260688 | + | KCNIP4 | chr4 | 21235057 | - |
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FusionProtFeatures for ATG3_KCNIP4 |
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Hgene | Tgene |
ATG3 | KCNIP4 |
E2 conjugating enzyme required for the cytoplasm tovacuole transport (Cvt), autophagy, and mitochondrial homeostasis.Responsible for the E2-like covalent binding ofphosphatidylethanolamine to the C-terminal Gly of ATG8-likeproteins (GABARAP, GABARAPL1, GABARAPL2 or MAP1LC3A). The ATG12-ATG5 conjugate plays a role of an E3 and promotes the transfer ofATG8-like proteins from ATG3 to phosphatidylethanolamine (PE).This step is required for the membrane association of ATG8-likeproteins. The formation of the ATG8-phosphatidylethanolamineconjugates is essential for autophagy and for the cytoplasm tovacuole transport (Cvt). Preferred substrate is MAP1LC3A. Alsoacts as an autocatalytic E2-like enzyme, catalyzing theconjugation of ATG12 to itself, ATG12 conjugation to ATG3 playinga role in mitochondrial homeostasis but not in autophagy. ATG7(E1-like enzyme) facilitates this reaction by forming an E1-E2complex with ATG3. Promotes primary ciliogenesis by removing OFD1from centriolar satellites via the autophagic pathway.{ECO:0000269|PubMed:11825910, ECO:0000269|PubMed:12207896,ECO:0000269|PubMed:12890687, ECO:0000269|PubMed:16704426,ECO:0000269|PubMed:20723759}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for ATG3_KCNIP4 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for ATG3_KCNIP4 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for ATG3_KCNIP4 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for ATG3_KCNIP4 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |