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Fusion gene ID: 31651 |
FusionGeneSummary for RNU6-1_EIF4G1 |
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Fusion gene information | Fusion gene name: RNU6-1_EIF4G1 | Fusion gene ID: 31651 | Hgene | Tgene | Gene symbol | RNU6-1 | EIF4G1 | Gene ID | 26827 | 1981 |
Gene name | RNA, U6 small nuclear 1 | eukaryotic translation initiation factor 4 gamma 1 | |
Synonyms | RNU6|RNU6A|U6|U6-1 | EIF-4G1|EIF4F|EIF4G|EIF4GI|P220|PARK18 | |
Cytomap | 15q23 | 3q27.1 | |
Type of gene | snRNA | protein-coding | |
Description | RNA, U6A small nuclear | eukaryotic translation initiation factor 4 gamma 1EIF4-gammaeIF-4-gamma 1eucaryotic translation initiation factor 4G | |
Modification date | 20180519 | 20180523 | |
UniProtAcc | Q04637 | ||
Ensembl transtripts involved in fusion gene | ENST00000383898, | ENST00000346169, ENST00000414031, ENST00000392537, ENST00000382330, ENST00000350481, ENST00000352767, ENST00000427845, ENST00000342981, ENST00000319274, ENST00000424196, ENST00000411531, ENST00000441154, ENST00000434061, ENST00000435046, | |
Fusion gene scores | * DoF score | 2 X 2 X 2=8 | 11 X 13 X 3=429 |
# samples | 2 | 19 | |
** MAII score | log2(2/8*10)=1.32192809488736 | log2(19/429*10)=-1.1749782291686 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: RNU6-1 [Title/Abstract] AND EIF4G1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | EIF4G1 | GO:1905612 | positive regulation of mRNA cap binding | 23409027 |
Tgene | EIF4G1 | GO:1905618 | positive regulation of miRNA mediated inhibition of translation | 23409027 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | BF696853 | RNU6-1 | chr3 | 180949632 | + | EIF4G1 | chr3 | 184038425 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3CDS | ENST00000383898 | ENST00000346169 | RNU6-1 | chr3 | 180949632 | + | EIF4G1 | chr3 | 184038425 | + |
intron-3CDS | ENST00000383898 | ENST00000414031 | RNU6-1 | chr3 | 180949632 | + | EIF4G1 | chr3 | 184038425 | + |
intron-3CDS | ENST00000383898 | ENST00000392537 | RNU6-1 | chr3 | 180949632 | + | EIF4G1 | chr3 | 184038425 | + |
intron-3CDS | ENST00000383898 | ENST00000382330 | RNU6-1 | chr3 | 180949632 | + | EIF4G1 | chr3 | 184038425 | + |
intron-3CDS | ENST00000383898 | ENST00000350481 | RNU6-1 | chr3 | 180949632 | + | EIF4G1 | chr3 | 184038425 | + |
intron-3CDS | ENST00000383898 | ENST00000352767 | RNU6-1 | chr3 | 180949632 | + | EIF4G1 | chr3 | 184038425 | + |
intron-3CDS | ENST00000383898 | ENST00000427845 | RNU6-1 | chr3 | 180949632 | + | EIF4G1 | chr3 | 184038425 | + |
intron-3CDS | ENST00000383898 | ENST00000342981 | RNU6-1 | chr3 | 180949632 | + | EIF4G1 | chr3 | 184038425 | + |
intron-3CDS | ENST00000383898 | ENST00000319274 | RNU6-1 | chr3 | 180949632 | + | EIF4G1 | chr3 | 184038425 | + |
intron-3CDS | ENST00000383898 | ENST00000424196 | RNU6-1 | chr3 | 180949632 | + | EIF4G1 | chr3 | 184038425 | + |
intron-3CDS | ENST00000383898 | ENST00000411531 | RNU6-1 | chr3 | 180949632 | + | EIF4G1 | chr3 | 184038425 | + |
intron-3CDS | ENST00000383898 | ENST00000441154 | RNU6-1 | chr3 | 180949632 | + | EIF4G1 | chr3 | 184038425 | + |
intron-5UTR | ENST00000383898 | ENST00000434061 | RNU6-1 | chr3 | 180949632 | + | EIF4G1 | chr3 | 184038425 | + |
intron-intron | ENST00000383898 | ENST00000435046 | RNU6-1 | chr3 | 180949632 | + | EIF4G1 | chr3 | 184038425 | + |
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FusionProtFeatures for RNU6-1_EIF4G1 |
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Hgene | Tgene |
RNU6-1 | EIF4G1 |
Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for RNU6-1_EIF4G1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for RNU6-1_EIF4G1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for RNU6-1_EIF4G1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for RNU6-1_EIF4G1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | EIF4G1 | C3280271 | PARKINSON DISEASE 18 | 1 | UNIPROT |