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Fusion gene ID: 31412 |
FusionGeneSummary for RNF123_CHMP2B |
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Fusion gene information | Fusion gene name: RNF123_CHMP2B | Fusion gene ID: 31412 | Hgene | Tgene | Gene symbol | RNF123 | CHMP2B | Gene ID | 63891 | 25978 |
Gene name | ring finger protein 123 | charged multivesicular body protein 2B | |
Synonyms | FP1477|KPC1 | ALS17|CHMP2.5|DMT1|VPS2-2|VPS2B | |
Cytomap | 3p21.31 | 3p11.2 | |
Type of gene | protein-coding | protein-coding | |
Description | E3 ubiquitin-protein ligase RNF123Kip1 ubiquitination-promoting complex subunit 1RING-type E3 ubiquitin transferase RNF123kip1 ubiquitination-promoting complex protein 1 | charged multivesicular body protein 2bVPS2 homolog Bchromatin modifying protein 2Bvacuolar protein-sorting-associated protein 2-2 | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | Q5XPI4 | Q9UQN3 | |
Ensembl transtripts involved in fusion gene | ENST00000327697, ENST00000432042, ENST00000433785, ENST00000497099, | ENST00000471660, ENST00000263780, ENST00000494980, ENST00000472024, | |
Fusion gene scores | * DoF score | 2 X 2 X 2=8 | 3 X 2 X 3=18 |
# samples | 2 | 3 | |
** MAII score | log2(2/8*10)=1.32192809488736 | log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: RNF123 [Title/Abstract] AND CHMP2B [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | CHMP2B | GO:0039702 | viral budding via host ESCRT complex | 24878737 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | ESCA | TCGA-R6-A8WG-01A | RNF123 | chr3 | 49751607 | + | CHMP2B | chr3 | 87294864 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000327697 | ENST00000471660 | RNF123 | chr3 | 49751607 | + | CHMP2B | chr3 | 87294864 | + |
Frame-shift | ENST00000327697 | ENST00000263780 | RNF123 | chr3 | 49751607 | + | CHMP2B | chr3 | 87294864 | + |
Frame-shift | ENST00000327697 | ENST00000494980 | RNF123 | chr3 | 49751607 | + | CHMP2B | chr3 | 87294864 | + |
5CDS-3UTR | ENST00000327697 | ENST00000472024 | RNF123 | chr3 | 49751607 | + | CHMP2B | chr3 | 87294864 | + |
intron-3CDS | ENST00000432042 | ENST00000471660 | RNF123 | chr3 | 49751607 | + | CHMP2B | chr3 | 87294864 | + |
intron-3CDS | ENST00000432042 | ENST00000263780 | RNF123 | chr3 | 49751607 | + | CHMP2B | chr3 | 87294864 | + |
intron-3CDS | ENST00000432042 | ENST00000494980 | RNF123 | chr3 | 49751607 | + | CHMP2B | chr3 | 87294864 | + |
intron-3UTR | ENST00000432042 | ENST00000472024 | RNF123 | chr3 | 49751607 | + | CHMP2B | chr3 | 87294864 | + |
Frame-shift | ENST00000433785 | ENST00000471660 | RNF123 | chr3 | 49751607 | + | CHMP2B | chr3 | 87294864 | + |
Frame-shift | ENST00000433785 | ENST00000263780 | RNF123 | chr3 | 49751607 | + | CHMP2B | chr3 | 87294864 | + |
Frame-shift | ENST00000433785 | ENST00000494980 | RNF123 | chr3 | 49751607 | + | CHMP2B | chr3 | 87294864 | + |
5CDS-3UTR | ENST00000433785 | ENST00000472024 | RNF123 | chr3 | 49751607 | + | CHMP2B | chr3 | 87294864 | + |
intron-3CDS | ENST00000497099 | ENST00000471660 | RNF123 | chr3 | 49751607 | + | CHMP2B | chr3 | 87294864 | + |
intron-3CDS | ENST00000497099 | ENST00000263780 | RNF123 | chr3 | 49751607 | + | CHMP2B | chr3 | 87294864 | + |
intron-3CDS | ENST00000497099 | ENST00000494980 | RNF123 | chr3 | 49751607 | + | CHMP2B | chr3 | 87294864 | + |
intron-3UTR | ENST00000497099 | ENST00000472024 | RNF123 | chr3 | 49751607 | + | CHMP2B | chr3 | 87294864 | + |
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FusionProtFeatures for RNF123_CHMP2B |
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Hgene | Tgene |
RNF123 | CHMP2B |
Probable core component of the endosomal sortingrequired for transport complex III (ESCRT-III) which is involvedin multivesicular bodies (MVBs) formation and sorting of endosomalcargo proteins into MVBs. MVBs contain intraluminal vesicles(ILVs) that are generated by invagination and scission from thelimiting membrane of the endosome and mostly are delivered tolysosomes enabling degradation of membrane proteins, such asstimulated growth factor receptors, lysosomal enzymes and lipids.The MVB pathway appears to require the sequential function ofESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostlydissociate from the invaginating membrane before the ILV isreleased. The ESCRT machinery also functions in topologicallyequivalent membrane fission events, such as the terminal stages ofcytokinesis and the budding of enveloped viruses (HIV-1 and otherlentiviruses). ESCRT-III proteins are believed to mediate thenecessary vesicle extrusion and/or membrane fission activities,possibly in conjunction with the AAA ATPase VPS4. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for RNF123_CHMP2B |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for RNF123_CHMP2B |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
RNF123 | UBAC1, PMS1, CDKN1B, RAD21, SMAD9, SMAD2, PLOD2, UBE2W, MOV10, NXF1, BVES, ZNF277, RDH12, GNAZ, NDUFA10, CHIA, ALDH3B1, PNPLA1, C3orf58, INSL3, TACC3, KIF21A, PCDHB15, NFKB1, BAG6, ELAC2, INSL6, AKIRIN2, USP48, MAP3K6, A1BG, NSMF, LCMT2, PML, REG4, HYAL1, FUOM, RNASE3, UBC, UBE2A, IFIH1, RARRES3 | CHMP2B | TRAF2, VHL, ATP5C1, SQSTM1, TERF2IP, USP8, USP54, CHMP2B, CHMP3, PNMA1, PHGDH, MALSU1, ATP6V1B1, CHMP2A, PAFAH1B1, CHMP4B, XPO1, MAD2L1, RAB5C, RAB7A, ATP6AP2, LTN1, GOLT1B, MYH14, SGOL1, CDH1, TMEM106B |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for RNF123_CHMP2B |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for RNF123_CHMP2B |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | RNF123 | C0011570 | Mental Depression | 2 | PSYGENET |
Hgene | RNF123 | C0011581 | Depressive disorder | 2 | PSYGENET |
Tgene | CHMP2B | C1836076 | Amyotrophic Lateral Sclerosis, Chmp2B-Related | 2 | UNIPROT |
Tgene | CHMP2B | C0002736 | Amyotrophic Lateral Sclerosis | 1 | CTD_human;HPO;ORPHANET |
Tgene | CHMP2B | C0338451 | Frontotemporal dementia | 1 | CTD_human;HPO |
Tgene | CHMP2B | C0751072 | Frontotemporal Lobar Degeneration | 1 | CTD_human |
Tgene | CHMP2B | C1833296 | FRONTOTEMPORAL DEMENTIA, CHROMOSOME 3-LINKED | 1 | CTD_human;UNIPROT |