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Fusion gene ID: 31152 |
FusionGeneSummary for RHBDL3_CTLA4 |
Fusion gene summary |
Fusion gene information | Fusion gene name: RHBDL3_CTLA4 | Fusion gene ID: 31152 | Hgene | Tgene | Gene symbol | RHBDL3 | CTLA4 | Gene ID | 162494 | 1493 |
Gene name | rhomboid like 3 | cytotoxic T-lymphocyte associated protein 4 | |
Synonyms | RHBDL4|VRHO | ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12 | |
Cytomap | 17q11.2 | 2q33.2 | |
Type of gene | protein-coding | protein-coding | |
Description | rhomboid-related protein 3rhomboid, veinlet-like 3rhomboid, veinlet-like 4ventrhoid transmembrane protein | cytotoxic T-lymphocyte protein 4CD152 isoformceliac disease 3cytotoxic T lymphocyte associated antigen 4 short spliced formcytotoxic T-lymphocyte-associated serine esterase-4insulin-dependent diabetes mellitus 12ligand and transmembrane spliced cyto | |
Modification date | 20180519 | 20180529 | |
UniProtAcc | P58872 | P16410 | |
Ensembl transtripts involved in fusion gene | ENST00000269051, ENST00000538145, ENST00000536287, | ENST00000302823, ENST00000295854, ENST00000472206, ENST00000487393, ENST00000427473, | |
Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 2 X 1 X 2=4 |
# samples | 1 | 2 | |
** MAII score | log2(1/1*10)=3.32192809488736 | log2(2/4*10)=2.32192809488736 | |
Context | PubMed: RHBDL3 [Title/Abstract] AND CTLA4 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | CTLA4 | GO:0045590 | negative regulation of regulatory T cell differentiation | 18641304 |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | GBM | TCGA-19-A60I-01A | RHBDL3 | chr17 | 30625223 | + | CTLA4 | chr2 | 204735309 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000269051 | ENST00000302823 | RHBDL3 | chr17 | 30625223 | + | CTLA4 | chr2 | 204735309 | + |
In-frame | ENST00000269051 | ENST00000295854 | RHBDL3 | chr17 | 30625223 | + | CTLA4 | chr2 | 204735309 | + |
In-frame | ENST00000269051 | ENST00000472206 | RHBDL3 | chr17 | 30625223 | + | CTLA4 | chr2 | 204735309 | + |
5CDS-intron | ENST00000269051 | ENST00000487393 | RHBDL3 | chr17 | 30625223 | + | CTLA4 | chr2 | 204735309 | + |
5CDS-5UTR | ENST00000269051 | ENST00000427473 | RHBDL3 | chr17 | 30625223 | + | CTLA4 | chr2 | 204735309 | + |
In-frame | ENST00000538145 | ENST00000302823 | RHBDL3 | chr17 | 30625223 | + | CTLA4 | chr2 | 204735309 | + |
In-frame | ENST00000538145 | ENST00000295854 | RHBDL3 | chr17 | 30625223 | + | CTLA4 | chr2 | 204735309 | + |
In-frame | ENST00000538145 | ENST00000472206 | RHBDL3 | chr17 | 30625223 | + | CTLA4 | chr2 | 204735309 | + |
5CDS-intron | ENST00000538145 | ENST00000487393 | RHBDL3 | chr17 | 30625223 | + | CTLA4 | chr2 | 204735309 | + |
5CDS-5UTR | ENST00000538145 | ENST00000427473 | RHBDL3 | chr17 | 30625223 | + | CTLA4 | chr2 | 204735309 | + |
In-frame | ENST00000536287 | ENST00000302823 | RHBDL3 | chr17 | 30625223 | + | CTLA4 | chr2 | 204735309 | + |
In-frame | ENST00000536287 | ENST00000295854 | RHBDL3 | chr17 | 30625223 | + | CTLA4 | chr2 | 204735309 | + |
In-frame | ENST00000536287 | ENST00000472206 | RHBDL3 | chr17 | 30625223 | + | CTLA4 | chr2 | 204735309 | + |
5CDS-intron | ENST00000536287 | ENST00000487393 | RHBDL3 | chr17 | 30625223 | + | CTLA4 | chr2 | 204735309 | + |
5CDS-5UTR | ENST00000536287 | ENST00000427473 | RHBDL3 | chr17 | 30625223 | + | CTLA4 | chr2 | 204735309 | + |
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FusionProtFeatures for RHBDL3_CTLA4 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
RHBDL3 | CTLA4 |
May be involved in regulated intramembrane proteolysisand the subsequent release of functional polypeptides from theirmembrane anchors. {ECO:0000250}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | RHBDL3 | chr17:30625223 | chr2:204735309 | ENST00000269051 | + | 6 | 9 | 34_69 | 260 | 405 | Domain | EF-hand 1 |
Hgene | RHBDL3 | chr17:30625223 | chr2:204735309 | ENST00000269051 | + | 6 | 9 | 70_105 | 260 | 405 | Domain | EF-hand 2 |
Hgene | RHBDL3 | chr17:30625223 | chr2:204735309 | ENST00000269051 | + | 6 | 9 | 164_184 | 260 | 405 | Transmembrane | Helical |
Hgene | RHBDL3 | chr17:30625223 | chr2:204735309 | ENST00000269051 | + | 6 | 9 | 218_238 | 260 | 405 | Transmembrane | Helical |
Tgene | >CTLA4 | chr17:30625223 | chr2:204735309 | ENST00000295854 | + | 0 | 3 | 39_140 | 36 | 175 | Domain | Note=Ig-like V-type |
Tgene | >CTLA4 | chr17:30625223 | chr2:204735309 | ENST00000302823 | + | 0 | 4 | 39_140 | 36 | 224 | Domain | Note=Ig-like V-type |
Tgene | >CTLA4 | chr17:30625223 | chr2:204735309 | ENST00000427473 | + | 0 | 3 | 39_140 | -1 | 138 | Domain | Note=Ig-like V-type |
Tgene | >CTLA4 | chr17:30625223 | chr2:204735309 | ENST00000472206 | + | 0 | 3 | 39_140 | 36 | 80 | Domain | Note=Ig-like V-type |
Tgene | >CTLA4 | chr17:30625223 | chr2:204735309 | ENST00000295854 | + | 0 | 3 | 150_155 | 36 | 175 | Region | Homodimerization |
Tgene | >CTLA4 | chr17:30625223 | chr2:204735309 | ENST00000295854 | + | 0 | 3 | 46_50 | 36 | 175 | Region | Homodimerization |
Tgene | >CTLA4 | chr17:30625223 | chr2:204735309 | ENST00000302823 | + | 0 | 4 | 150_155 | 36 | 224 | Region | Homodimerization |
Tgene | >CTLA4 | chr17:30625223 | chr2:204735309 | ENST00000302823 | + | 0 | 4 | 46_50 | 36 | 224 | Region | Homodimerization |
Tgene | >CTLA4 | chr17:30625223 | chr2:204735309 | ENST00000427473 | + | 0 | 3 | 150_155 | -1 | 138 | Region | Homodimerization |
Tgene | >CTLA4 | chr17:30625223 | chr2:204735309 | ENST00000427473 | + | 0 | 3 | 46_50 | -1 | 138 | Region | Homodimerization |
Tgene | >CTLA4 | chr17:30625223 | chr2:204735309 | ENST00000472206 | + | 0 | 3 | 150_155 | 36 | 80 | Region | Homodimerization |
Tgene | >CTLA4 | chr17:30625223 | chr2:204735309 | ENST00000472206 | + | 0 | 3 | 46_50 | 36 | 80 | Region | Homodimerization |
Tgene | >CTLA4 | chr17:30625223 | chr2:204735309 | ENST00000295854 | + | 0 | 3 | 183_223 | 36 | 175 | Topological domain | Cytoplasmic |
Tgene | >CTLA4 | chr17:30625223 | chr2:204735309 | ENST00000295854 | + | 0 | 3 | 36_161 | 36 | 175 | Topological domain | Extracellular |
Tgene | >CTLA4 | chr17:30625223 | chr2:204735309 | ENST00000302823 | + | 0 | 4 | 183_223 | 36 | 224 | Topological domain | Cytoplasmic |
Tgene | >CTLA4 | chr17:30625223 | chr2:204735309 | ENST00000302823 | + | 0 | 4 | 36_161 | 36 | 224 | Topological domain | Extracellular |
Tgene | >CTLA4 | chr17:30625223 | chr2:204735309 | ENST00000427473 | + | 0 | 3 | 183_223 | -1 | 138 | Topological domain | Cytoplasmic |
Tgene | >CTLA4 | chr17:30625223 | chr2:204735309 | ENST00000427473 | + | 0 | 3 | 36_161 | -1 | 138 | Topological domain | Extracellular |
Tgene | >CTLA4 | chr17:30625223 | chr2:204735309 | ENST00000472206 | + | 0 | 3 | 183_223 | 36 | 80 | Topological domain | Cytoplasmic |
Tgene | >CTLA4 | chr17:30625223 | chr2:204735309 | ENST00000472206 | + | 0 | 3 | 36_161 | 36 | 80 | Topological domain | Extracellular |
Tgene | >CTLA4 | chr17:30625223 | chr2:204735309 | ENST00000295854 | + | 0 | 3 | 162_182 | 36 | 175 | Transmembrane | Helical |
Tgene | >CTLA4 | chr17:30625223 | chr2:204735309 | ENST00000302823 | + | 0 | 4 | 162_182 | 36 | 224 | Transmembrane | Helical |
Tgene | >CTLA4 | chr17:30625223 | chr2:204735309 | ENST00000427473 | + | 0 | 3 | 162_182 | -1 | 138 | Transmembrane | Helical |
Tgene | >CTLA4 | chr17:30625223 | chr2:204735309 | ENST00000472206 | + | 0 | 3 | 162_182 | 36 | 80 | Transmembrane | Helical |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >RHBDL3 | chr17:30625223 | chr2:204735309 | ENST00000269051 | + | 6 | 9 | 250_270 | 260 | 405 | Transmembrane | Helical |
Hgene | >RHBDL3 | chr17:30625223 | chr2:204735309 | ENST00000269051 | + | 6 | 9 | 274_294 | 260 | 405 | Transmembrane | Helical |
Hgene | >RHBDL3 | chr17:30625223 | chr2:204735309 | ENST00000269051 | + | 6 | 9 | 303_325 | 260 | 405 | Transmembrane | Helical |
Hgene | >RHBDL3 | chr17:30625223 | chr2:204735309 | ENST00000269051 | + | 6 | 9 | 338_358 | 260 | 405 | Transmembrane | Helical |
Hgene | >RHBDL3 | chr17:30625223 | chr2:204735309 | ENST00000269051 | + | 6 | 9 | 371_391 | 260 | 405 | Transmembrane | Helical |
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FusionGeneSequence for RHBDL3_CTLA4 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_RHBDL3_ENST00000269051_chr17_30625223_+_CTLA4_ENST00000302823_chr2_204735309_+_448aa MGEHPSPGPAVAACAEAERIEELEPEAEERLPAAPEDHWKVLFDQFDPGNTGYISTGKFRSLLESHSSKLDPHKREVLLALADSHADGQI GYQDFVSLMSNKRSNSFRQAILQGNRRLSSKALLEEKGLSLSQRLIRHVAYETLPREIDRKWYYDSYTCCPPPWFMITVTLLEVAFFLYN GVSLGQFVLQVTHPRYLKNSLVYHPQLRAQVWRYLTYIFMHAGIEHLGLNVVLQLLVGVPLEMVHGATRIGLVYVAGVVAAMHVAQPAVV LASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYP >In-frame_RHBDL3_ENST00000269051_chr17_30625223_+_CTLA4_ENST00000295854_chr2_204735309_+_399aa MGEHPSPGPAVAACAEAERIEELEPEAEERLPAAPEDHWKVLFDQFDPGNTGYISTGKFRSLLESHSSKLDPHKREVLLALADSHADGQI GYQDFVSLMSNKRSNSFRQAILQGNRRLSSKALLEEKGLSLSQRLIRHVAYETLPREIDRKWYYDSYTCCPPPWFMITVTLLEVAFFLYN GVSLGQFVLQVTHPRYLKNSLVYHPQLRAQVWRYLTYIFMHAGIEHLGLNVVLQLLVGVPLEMVHGATRIGLVYVAGVVAAMHVAQPAVV LASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYP >In-frame_RHBDL3_ENST00000269051_chr17_30625223_+_CTLA4_ENST00000472206_chr2_204735309_+_304aa MGEHPSPGPAVAACAEAERIEELEPEAEERLPAAPEDHWKVLFDQFDPGNTGYISTGKFRSLLESHSSKLDPHKREVLLALADSHADGQI GYQDFVSLMSNKRSNSFRQAILQGNRRLSSKALLEEKGLSLSQRLIRHVAYETLPREIDRKWYYDSYTCCPPPWFMITVTLLEVAFFLYN GVSLGQFVLQVTHPRYLKNSLVYHPQLRAQVWRYLTYIFMHAGIEHLGLNVVLQLLVGVPLEMVHGATRIGLVYVAGVVAAMHVAQPAVV >In-frame_RHBDL3_ENST00000538145_chr17_30625223_+_CTLA4_ENST00000302823_chr2_204735309_+_440aa MGEHPSPGPAVAACAEAERIEELEPEAEERLPAAPEDFDPGNTGYISTGKFRSLLESHSSKLDPHKREVLLALADSHADGQIGYQDFVSL MSNKRSNSFRQAILQGNRRLSSKALLEEKGLSLSQRLIRHVAYETLPREIDRKWYYDSYTCCPPPWFMITVTLLEVAFFLYNGVSLGQFV LQVTHPRYLKNSLVYHPQLRAQVWRYLTYIFMHAGIEHLGLNVVLQLLVGVPLEMVHGATRIGLVYVAGVVAAMHVAQPAVVLASSRGIA SFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLGIG >In-frame_RHBDL3_ENST00000538145_chr17_30625223_+_CTLA4_ENST00000295854_chr2_204735309_+_391aa MGEHPSPGPAVAACAEAERIEELEPEAEERLPAAPEDFDPGNTGYISTGKFRSLLESHSSKLDPHKREVLLALADSHADGQIGYQDFVSL MSNKRSNSFRQAILQGNRRLSSKALLEEKGLSLSQRLIRHVAYETLPREIDRKWYYDSYTCCPPPWFMITVTLLEVAFFLYNGVSLGQFV LQVTHPRYLKNSLVYHPQLRAQVWRYLTYIFMHAGIEHLGLNVVLQLLVGVPLEMVHGATRIGLVYVAGVVAAMHVAQPAVVLASSRGIA SFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLGIG >In-frame_RHBDL3_ENST00000538145_chr17_30625223_+_CTLA4_ENST00000472206_chr2_204735309_+_296aa MGEHPSPGPAVAACAEAERIEELEPEAEERLPAAPEDFDPGNTGYISTGKFRSLLESHSSKLDPHKREVLLALADSHADGQIGYQDFVSL MSNKRSNSFRQAILQGNRRLSSKALLEEKGLSLSQRLIRHVAYETLPREIDRKWYYDSYTCCPPPWFMITVTLLEVAFFLYNGVSLGQFV LQVTHPRYLKNSLVYHPQLRAQVWRYLTYIFMHAGIEHLGLNVVLQLLVGVPLEMVHGATRIGLVYVAGVVAAMHVAQPAVVLASSRGIA >In-frame_RHBDL3_ENST00000536287_chr17_30625223_+_CTLA4_ENST00000302823_chr2_204735309_+_350aa MSNKRSNSFRQAILQGNRRLSSKALLEEKGLSLSQRLIRHVAYETLPREIDRKWYYDSYTCCPPPWFMITVTLLEVAFFLYNGVSLGQFV LQVTHPRYLKNSLVYHPQLRAQVWRYLTYIFMHAGIEHLGLNVVLQLLVGVPLEMVHGATRIGLVYVAGVVAAMHVAQPAVVLASSRGIA SFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLGIG >In-frame_RHBDL3_ENST00000536287_chr17_30625223_+_CTLA4_ENST00000295854_chr2_204735309_+_301aa MSNKRSNSFRQAILQGNRRLSSKALLEEKGLSLSQRLIRHVAYETLPREIDRKWYYDSYTCCPPPWFMITVTLLEVAFFLYNGVSLGQFV LQVTHPRYLKNSLVYHPQLRAQVWRYLTYIFMHAGIEHLGLNVVLQLLVGVPLEMVHGATRIGLVYVAGVVAAMHVAQPAVVLASSRGIA SFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLGIG >In-frame_RHBDL3_ENST00000536287_chr17_30625223_+_CTLA4_ENST00000472206_chr2_204735309_+_206aa MSNKRSNSFRQAILQGNRRLSSKALLEEKGLSLSQRLIRHVAYETLPREIDRKWYYDSYTCCPPPWFMITVTLLEVAFFLYNGVSLGQFV LQVTHPRYLKNSLVYHPQLRAQVWRYLTYIFMHAGIEHLGLNVVLQLLVGVPLEMVHGATRIGLVYVAGVVAAMHVAQPAVVLASSRGIA |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_RHBDL3_ENST00000269051_chr17_30625223_+_CTLA4_ENST00000302823_chr2_204735309_+_1344nt ATGGGCGAGCACCCCAGCCCGGGCCCCGCGGTGGCCGCCTGCGCCGAGGCGGAGCGCATCGAGGAGCTGGAACCCGAGGCCGAGGAGCGG CTGCCCGCGGCGCCGGAGGACCACTGGAAAGTCCTGTTTGATCAGTTTGACCCTGGGAACACAGGCTACATTAGCACAGGCAAGTTCCGG AGTCTTCTGGAGAGCCACAGCTCCAAGCTGGACCCGCACAAAAGGGAGGTCCTCCTGGCTCTTGCCGACAGCCACGCGGATGGGCAGATC GGCTACCAGGATTTTGTCAGCCTAATGAGCAACAAGCGTTCCAACAGCTTCCGCCAAGCCATCCTGCAGGGCAACCGCAGGCTAAGCAGC AAGGCCCTGCTGGAGGAGAAGGGGCTGAGCCTCTCGCAGCGACTTATCCGCCATGTGGCCTATGAGACCCTGCCCCGGGAAATTGACCGC AAGTGGTACTATGACAGCTACACCTGCTGCCCCCCACCCTGGTTCATGATCACAGTCACGCTGCTGGAGGTTGCCTTTTTCCTCTACAAT GGGGTGTCACTAGGTCAATTTGTACTGCAGGTAACTCATCCACGTTACTTGAAGAACTCCCTGGTTTACCACCCACAGCTGCGAGCACAG GTTTGGCGCTACCTGACATACATCTTCATGCATGCAGGGATAGAACACCTGGGACTCAATGTGGTGCTGCAGCTGCTGGTGGGGGTGCCC CTGGAGATGGTGCATGGAGCCACCCGAATTGGGCTTGTCTACGTGGCCGGTGTTGTGGCAGCAATGCACGTGGCCCAGCCTGCTGTGGTA CTGGCCAGCAGCCGAGGCATCGCCAGCTTTGTGTGTGAGTATGCATCTCCAGGCAAAGCCACTGAGGTCCGGGTGACAGTGCTTCGGCAG GCTGACAGCCAGGTGACTGAAGTCTGTGCGGCAACCTACATGATGGGGAATGAGTTGACCTTCCTAGATGATTCCATCTGCACGGGCACC TCCAGTGGAAATCAAGTGAACCTCACTATCCAAGGACTGAGGGCCATGGACACGGGACTCTACATCTGCAAGGTGGAGCTCATGTACCCA CCGCCATACTACCTGGGCATAGGCAACGGAACCCAGATTTATGTAATTGATCCAGAACCGTGCCCAGATTCTGACTTCCTCCTCTGGATC CTTGCAGCAGTTAGTTCGGGGTTGTTTTTTTATAGCTTTCTCCTCACAGCTGTTTCTTTGAGCAAAATGCTAAAGAAAAGAAGCCCTCTT >In-frame_RHBDL3_ENST00000269051_chr17_30625223_+_CTLA4_ENST00000295854_chr2_204735309_+_1197nt ATGGGCGAGCACCCCAGCCCGGGCCCCGCGGTGGCCGCCTGCGCCGAGGCGGAGCGCATCGAGGAGCTGGAACCCGAGGCCGAGGAGCGG CTGCCCGCGGCGCCGGAGGACCACTGGAAAGTCCTGTTTGATCAGTTTGACCCTGGGAACACAGGCTACATTAGCACAGGCAAGTTCCGG AGTCTTCTGGAGAGCCACAGCTCCAAGCTGGACCCGCACAAAAGGGAGGTCCTCCTGGCTCTTGCCGACAGCCACGCGGATGGGCAGATC GGCTACCAGGATTTTGTCAGCCTAATGAGCAACAAGCGTTCCAACAGCTTCCGCCAAGCCATCCTGCAGGGCAACCGCAGGCTAAGCAGC AAGGCCCTGCTGGAGGAGAAGGGGCTGAGCCTCTCGCAGCGACTTATCCGCCATGTGGCCTATGAGACCCTGCCCCGGGAAATTGACCGC AAGTGGTACTATGACAGCTACACCTGCTGCCCCCCACCCTGGTTCATGATCACAGTCACGCTGCTGGAGGTTGCCTTTTTCCTCTACAAT GGGGTGTCACTAGGTCAATTTGTACTGCAGGTAACTCATCCACGTTACTTGAAGAACTCCCTGGTTTACCACCCACAGCTGCGAGCACAG GTTTGGCGCTACCTGACATACATCTTCATGCATGCAGGGATAGAACACCTGGGACTCAATGTGGTGCTGCAGCTGCTGGTGGGGGTGCCC CTGGAGATGGTGCATGGAGCCACCCGAATTGGGCTTGTCTACGTGGCCGGTGTTGTGGCAGCAATGCACGTGGCCCAGCCTGCTGTGGTA CTGGCCAGCAGCCGAGGCATCGCCAGCTTTGTGTGTGAGTATGCATCTCCAGGCAAAGCCACTGAGGTCCGGGTGACAGTGCTTCGGCAG GCTGACAGCCAGGTGACTGAAGTCTGTGCGGCAACCTACATGATGGGGAATGAGTTGACCTTCCTAGATGATTCCATCTGCACGGGCACC TCCAGTGGAAATCAAGTGAACCTCACTATCCAAGGACTGAGGGCCATGGACACGGGACTCTACATCTGCAAGGTGGAGCTCATGTACCCA CCGCCATACTACCTGGGCATAGGCAACGGAACCCAGATTTATGTAATTGCTAAAGAAAAGAAGCCCTCTTACAACAGGGGTCTATGTGAA >In-frame_RHBDL3_ENST00000269051_chr17_30625223_+_CTLA4_ENST00000472206_chr2_204735309_+_912nt ATGGGCGAGCACCCCAGCCCGGGCCCCGCGGTGGCCGCCTGCGCCGAGGCGGAGCGCATCGAGGAGCTGGAACCCGAGGCCGAGGAGCGG CTGCCCGCGGCGCCGGAGGACCACTGGAAAGTCCTGTTTGATCAGTTTGACCCTGGGAACACAGGCTACATTAGCACAGGCAAGTTCCGG AGTCTTCTGGAGAGCCACAGCTCCAAGCTGGACCCGCACAAAAGGGAGGTCCTCCTGGCTCTTGCCGACAGCCACGCGGATGGGCAGATC GGCTACCAGGATTTTGTCAGCCTAATGAGCAACAAGCGTTCCAACAGCTTCCGCCAAGCCATCCTGCAGGGCAACCGCAGGCTAAGCAGC AAGGCCCTGCTGGAGGAGAAGGGGCTGAGCCTCTCGCAGCGACTTATCCGCCATGTGGCCTATGAGACCCTGCCCCGGGAAATTGACCGC AAGTGGTACTATGACAGCTACACCTGCTGCCCCCCACCCTGGTTCATGATCACAGTCACGCTGCTGGAGGTTGCCTTTTTCCTCTACAAT GGGGTGTCACTAGGTCAATTTGTACTGCAGGTAACTCATCCACGTTACTTGAAGAACTCCCTGGTTTACCACCCACAGCTGCGAGCACAG GTTTGGCGCTACCTGACATACATCTTCATGCATGCAGGGATAGAACACCTGGGACTCAATGTGGTGCTGCAGCTGCTGGTGGGGGTGCCC CTGGAGATGGTGCATGGAGCCACCCGAATTGGGCTTGTCTACGTGGCCGGTGTTGTGGCAGCAATGCACGTGGCCCAGCCTGCTGTGGTA CTGGCCAGCAGCCGAGGCATCGCCAGCTTTGTGTCTAAAGAAAAGAAGCCCTCTTACAACAGGGGTCTATGTGAAAATGCCCCCAACAGA >In-frame_RHBDL3_ENST00000538145_chr17_30625223_+_CTLA4_ENST00000302823_chr2_204735309_+_1320nt ATGGGCGAGCACCCCAGCCCGGGCCCCGCGGTGGCCGCCTGCGCCGAGGCGGAGCGCATCGAGGAGCTGGAACCCGAGGCCGAGGAGCGG CTGCCCGCGGCGCCGGAGGACTTTGACCCTGGGAACACAGGCTACATTAGCACAGGCAAGTTCCGGAGTCTTCTGGAGAGCCACAGCTCC AAGCTGGACCCGCACAAAAGGGAGGTCCTCCTGGCTCTTGCCGACAGCCACGCGGATGGGCAGATCGGCTACCAGGATTTTGTCAGCCTA ATGAGCAACAAGCGTTCCAACAGCTTCCGCCAAGCCATCCTGCAGGGCAACCGCAGGCTAAGCAGCAAGGCCCTGCTGGAGGAGAAGGGG CTGAGCCTCTCGCAGCGACTTATCCGCCATGTGGCCTATGAGACCCTGCCCCGGGAAATTGACCGCAAGTGGTACTATGACAGCTACACC TGCTGCCCCCCACCCTGGTTCATGATCACAGTCACGCTGCTGGAGGTTGCCTTTTTCCTCTACAATGGGGTGTCACTAGGTCAATTTGTA CTGCAGGTAACTCATCCACGTTACTTGAAGAACTCCCTGGTTTACCACCCACAGCTGCGAGCACAGGTTTGGCGCTACCTGACATACATC TTCATGCATGCAGGGATAGAACACCTGGGACTCAATGTGGTGCTGCAGCTGCTGGTGGGGGTGCCCCTGGAGATGGTGCATGGAGCCACC CGAATTGGGCTTGTCTACGTGGCCGGTGTTGTGGCAGCAATGCACGTGGCCCAGCCTGCTGTGGTACTGGCCAGCAGCCGAGGCATCGCC AGCTTTGTGTGTGAGTATGCATCTCCAGGCAAAGCCACTGAGGTCCGGGTGACAGTGCTTCGGCAGGCTGACAGCCAGGTGACTGAAGTC TGTGCGGCAACCTACATGATGGGGAATGAGTTGACCTTCCTAGATGATTCCATCTGCACGGGCACCTCCAGTGGAAATCAAGTGAACCTC ACTATCCAAGGACTGAGGGCCATGGACACGGGACTCTACATCTGCAAGGTGGAGCTCATGTACCCACCGCCATACTACCTGGGCATAGGC AACGGAACCCAGATTTATGTAATTGATCCAGAACCGTGCCCAGATTCTGACTTCCTCCTCTGGATCCTTGCAGCAGTTAGTTCGGGGTTG TTTTTTTATAGCTTTCTCCTCACAGCTGTTTCTTTGAGCAAAATGCTAAAGAAAAGAAGCCCTCTTACAACAGGGGTCTATGTGAAAATG >In-frame_RHBDL3_ENST00000538145_chr17_30625223_+_CTLA4_ENST00000295854_chr2_204735309_+_1173nt ATGGGCGAGCACCCCAGCCCGGGCCCCGCGGTGGCCGCCTGCGCCGAGGCGGAGCGCATCGAGGAGCTGGAACCCGAGGCCGAGGAGCGG CTGCCCGCGGCGCCGGAGGACTTTGACCCTGGGAACACAGGCTACATTAGCACAGGCAAGTTCCGGAGTCTTCTGGAGAGCCACAGCTCC AAGCTGGACCCGCACAAAAGGGAGGTCCTCCTGGCTCTTGCCGACAGCCACGCGGATGGGCAGATCGGCTACCAGGATTTTGTCAGCCTA ATGAGCAACAAGCGTTCCAACAGCTTCCGCCAAGCCATCCTGCAGGGCAACCGCAGGCTAAGCAGCAAGGCCCTGCTGGAGGAGAAGGGG CTGAGCCTCTCGCAGCGACTTATCCGCCATGTGGCCTATGAGACCCTGCCCCGGGAAATTGACCGCAAGTGGTACTATGACAGCTACACC TGCTGCCCCCCACCCTGGTTCATGATCACAGTCACGCTGCTGGAGGTTGCCTTTTTCCTCTACAATGGGGTGTCACTAGGTCAATTTGTA CTGCAGGTAACTCATCCACGTTACTTGAAGAACTCCCTGGTTTACCACCCACAGCTGCGAGCACAGGTTTGGCGCTACCTGACATACATC TTCATGCATGCAGGGATAGAACACCTGGGACTCAATGTGGTGCTGCAGCTGCTGGTGGGGGTGCCCCTGGAGATGGTGCATGGAGCCACC CGAATTGGGCTTGTCTACGTGGCCGGTGTTGTGGCAGCAATGCACGTGGCCCAGCCTGCTGTGGTACTGGCCAGCAGCCGAGGCATCGCC AGCTTTGTGTGTGAGTATGCATCTCCAGGCAAAGCCACTGAGGTCCGGGTGACAGTGCTTCGGCAGGCTGACAGCCAGGTGACTGAAGTC TGTGCGGCAACCTACATGATGGGGAATGAGTTGACCTTCCTAGATGATTCCATCTGCACGGGCACCTCCAGTGGAAATCAAGTGAACCTC ACTATCCAAGGACTGAGGGCCATGGACACGGGACTCTACATCTGCAAGGTGGAGCTCATGTACCCACCGCCATACTACCTGGGCATAGGC AACGGAACCCAGATTTATGTAATTGCTAAAGAAAAGAAGCCCTCTTACAACAGGGGTCTATGTGAAAATGCCCCCAACAGAGCCAGAATG >In-frame_RHBDL3_ENST00000538145_chr17_30625223_+_CTLA4_ENST00000472206_chr2_204735309_+_888nt ATGGGCGAGCACCCCAGCCCGGGCCCCGCGGTGGCCGCCTGCGCCGAGGCGGAGCGCATCGAGGAGCTGGAACCCGAGGCCGAGGAGCGG CTGCCCGCGGCGCCGGAGGACTTTGACCCTGGGAACACAGGCTACATTAGCACAGGCAAGTTCCGGAGTCTTCTGGAGAGCCACAGCTCC AAGCTGGACCCGCACAAAAGGGAGGTCCTCCTGGCTCTTGCCGACAGCCACGCGGATGGGCAGATCGGCTACCAGGATTTTGTCAGCCTA ATGAGCAACAAGCGTTCCAACAGCTTCCGCCAAGCCATCCTGCAGGGCAACCGCAGGCTAAGCAGCAAGGCCCTGCTGGAGGAGAAGGGG CTGAGCCTCTCGCAGCGACTTATCCGCCATGTGGCCTATGAGACCCTGCCCCGGGAAATTGACCGCAAGTGGTACTATGACAGCTACACC TGCTGCCCCCCACCCTGGTTCATGATCACAGTCACGCTGCTGGAGGTTGCCTTTTTCCTCTACAATGGGGTGTCACTAGGTCAATTTGTA CTGCAGGTAACTCATCCACGTTACTTGAAGAACTCCCTGGTTTACCACCCACAGCTGCGAGCACAGGTTTGGCGCTACCTGACATACATC TTCATGCATGCAGGGATAGAACACCTGGGACTCAATGTGGTGCTGCAGCTGCTGGTGGGGGTGCCCCTGGAGATGGTGCATGGAGCCACC CGAATTGGGCTTGTCTACGTGGCCGGTGTTGTGGCAGCAATGCACGTGGCCCAGCCTGCTGTGGTACTGGCCAGCAGCCGAGGCATCGCC >In-frame_RHBDL3_ENST00000536287_chr17_30625223_+_CTLA4_ENST00000302823_chr2_204735309_+_1050nt ATGAGCAACAAGCGTTCCAACAGCTTCCGCCAAGCCATCCTGCAGGGCAACCGCAGGCTAAGCAGCAAGGCCCTGCTGGAGGAGAAGGGG CTGAGCCTCTCGCAGCGACTTATCCGCCATGTGGCCTATGAGACCCTGCCCCGGGAAATTGACCGCAAGTGGTACTATGACAGCTACACC TGCTGCCCCCCACCCTGGTTCATGATCACAGTCACGCTGCTGGAGGTTGCCTTTTTCCTCTACAATGGGGTGTCACTAGGTCAATTTGTA CTGCAGGTAACTCATCCACGTTACTTGAAGAACTCCCTGGTTTACCACCCACAGCTGCGAGCACAGGTTTGGCGCTACCTGACATACATC TTCATGCATGCAGGGATAGAACACCTGGGACTCAATGTGGTGCTGCAGCTGCTGGTGGGGGTGCCCCTGGAGATGGTGCATGGAGCCACC CGAATTGGGCTTGTCTACGTGGCCGGTGTTGTGGCAGCAATGCACGTGGCCCAGCCTGCTGTGGTACTGGCCAGCAGCCGAGGCATCGCC AGCTTTGTGTGTGAGTATGCATCTCCAGGCAAAGCCACTGAGGTCCGGGTGACAGTGCTTCGGCAGGCTGACAGCCAGGTGACTGAAGTC TGTGCGGCAACCTACATGATGGGGAATGAGTTGACCTTCCTAGATGATTCCATCTGCACGGGCACCTCCAGTGGAAATCAAGTGAACCTC ACTATCCAAGGACTGAGGGCCATGGACACGGGACTCTACATCTGCAAGGTGGAGCTCATGTACCCACCGCCATACTACCTGGGCATAGGC AACGGAACCCAGATTTATGTAATTGATCCAGAACCGTGCCCAGATTCTGACTTCCTCCTCTGGATCCTTGCAGCAGTTAGTTCGGGGTTG TTTTTTTATAGCTTTCTCCTCACAGCTGTTTCTTTGAGCAAAATGCTAAAGAAAAGAAGCCCTCTTACAACAGGGGTCTATGTGAAAATG >In-frame_RHBDL3_ENST00000536287_chr17_30625223_+_CTLA4_ENST00000295854_chr2_204735309_+_903nt ATGAGCAACAAGCGTTCCAACAGCTTCCGCCAAGCCATCCTGCAGGGCAACCGCAGGCTAAGCAGCAAGGCCCTGCTGGAGGAGAAGGGG CTGAGCCTCTCGCAGCGACTTATCCGCCATGTGGCCTATGAGACCCTGCCCCGGGAAATTGACCGCAAGTGGTACTATGACAGCTACACC TGCTGCCCCCCACCCTGGTTCATGATCACAGTCACGCTGCTGGAGGTTGCCTTTTTCCTCTACAATGGGGTGTCACTAGGTCAATTTGTA CTGCAGGTAACTCATCCACGTTACTTGAAGAACTCCCTGGTTTACCACCCACAGCTGCGAGCACAGGTTTGGCGCTACCTGACATACATC TTCATGCATGCAGGGATAGAACACCTGGGACTCAATGTGGTGCTGCAGCTGCTGGTGGGGGTGCCCCTGGAGATGGTGCATGGAGCCACC CGAATTGGGCTTGTCTACGTGGCCGGTGTTGTGGCAGCAATGCACGTGGCCCAGCCTGCTGTGGTACTGGCCAGCAGCCGAGGCATCGCC AGCTTTGTGTGTGAGTATGCATCTCCAGGCAAAGCCACTGAGGTCCGGGTGACAGTGCTTCGGCAGGCTGACAGCCAGGTGACTGAAGTC TGTGCGGCAACCTACATGATGGGGAATGAGTTGACCTTCCTAGATGATTCCATCTGCACGGGCACCTCCAGTGGAAATCAAGTGAACCTC ACTATCCAAGGACTGAGGGCCATGGACACGGGACTCTACATCTGCAAGGTGGAGCTCATGTACCCACCGCCATACTACCTGGGCATAGGC AACGGAACCCAGATTTATGTAATTGCTAAAGAAAAGAAGCCCTCTTACAACAGGGGTCTATGTGAAAATGCCCCCAACAGAGCCAGAATG >In-frame_RHBDL3_ENST00000536287_chr17_30625223_+_CTLA4_ENST00000472206_chr2_204735309_+_618nt ATGAGCAACAAGCGTTCCAACAGCTTCCGCCAAGCCATCCTGCAGGGCAACCGCAGGCTAAGCAGCAAGGCCCTGCTGGAGGAGAAGGGG CTGAGCCTCTCGCAGCGACTTATCCGCCATGTGGCCTATGAGACCCTGCCCCGGGAAATTGACCGCAAGTGGTACTATGACAGCTACACC TGCTGCCCCCCACCCTGGTTCATGATCACAGTCACGCTGCTGGAGGTTGCCTTTTTCCTCTACAATGGGGTGTCACTAGGTCAATTTGTA CTGCAGGTAACTCATCCACGTTACTTGAAGAACTCCCTGGTTTACCACCCACAGCTGCGAGCACAGGTTTGGCGCTACCTGACATACATC TTCATGCATGCAGGGATAGAACACCTGGGACTCAATGTGGTGCTGCAGCTGCTGGTGGGGGTGCCCCTGGAGATGGTGCATGGAGCCACC CGAATTGGGCTTGTCTACGTGGCCGGTGTTGTGGCAGCAATGCACGTGGCCCAGCCTGCTGTGGTACTGGCCAGCAGCCGAGGCATCGCC |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_RHBDL3_ENST00000269051_chr17_30625223_+_CTLA4_ENST00000302823_chr2_204735309_+_2506nt ACCCCGTCTCGGCCATGGGCGAGCACCCCAGCCCGGGCCCCGCGGTGGCCGCCTGCGCCGAGGCGGAGCGCATCGAGGAGCTGGAACCCG AGGCCGAGGAGCGGCTGCCCGCGGCGCCGGAGGACCACTGGAAAGTCCTGTTTGATCAGTTTGACCCTGGGAACACAGGCTACATTAGCA CAGGCAAGTTCCGGAGTCTTCTGGAGAGCCACAGCTCCAAGCTGGACCCGCACAAAAGGGAGGTCCTCCTGGCTCTTGCCGACAGCCACG CGGATGGGCAGATCGGCTACCAGGATTTTGTCAGCCTAATGAGCAACAAGCGTTCCAACAGCTTCCGCCAAGCCATCCTGCAGGGCAACC GCAGGCTAAGCAGCAAGGCCCTGCTGGAGGAGAAGGGGCTGAGCCTCTCGCAGCGACTTATCCGCCATGTGGCCTATGAGACCCTGCCCC GGGAAATTGACCGCAAGTGGTACTATGACAGCTACACCTGCTGCCCCCCACCCTGGTTCATGATCACAGTCACGCTGCTGGAGGTTGCCT TTTTCCTCTACAATGGGGTGTCACTAGGTCAATTTGTACTGCAGGTAACTCATCCACGTTACTTGAAGAACTCCCTGGTTTACCACCCAC AGCTGCGAGCACAGGTTTGGCGCTACCTGACATACATCTTCATGCATGCAGGGATAGAACACCTGGGACTCAATGTGGTGCTGCAGCTGC TGGTGGGGGTGCCCCTGGAGATGGTGCATGGAGCCACCCGAATTGGGCTTGTCTACGTGGCCGGTGTTGTGGCAGCAATGCACGTGGCCC AGCCTGCTGTGGTACTGGCCAGCAGCCGAGGCATCGCCAGCTTTGTGTGTGAGTATGCATCTCCAGGCAAAGCCACTGAGGTCCGGGTGA CAGTGCTTCGGCAGGCTGACAGCCAGGTGACTGAAGTCTGTGCGGCAACCTACATGATGGGGAATGAGTTGACCTTCCTAGATGATTCCA TCTGCACGGGCACCTCCAGTGGAAATCAAGTGAACCTCACTATCCAAGGACTGAGGGCCATGGACACGGGACTCTACATCTGCAAGGTGG AGCTCATGTACCCACCGCCATACTACCTGGGCATAGGCAACGGAACCCAGATTTATGTAATTGATCCAGAACCGTGCCCAGATTCTGACT TCCTCCTCTGGATCCTTGCAGCAGTTAGTTCGGGGTTGTTTTTTTATAGCTTTCTCCTCACAGCTGTTTCTTTGAGCAAAATGCTAAAGA AAAGAAGCCCTCTTACAACAGGGGTCTATGTGAAAATGCCCCCAACAGAGCCAGAATGTGAAAAGCAATTTCAGCCTTATTTTATTCCCA TCAATTGAGAAACCATTATGAAGAAGAGAGTCCATATTTCAATTTCCAAGAGCTGAGGCAATTCTAACTTTTTTGCTATCCAGCTATTTT TATTTGTTTGTGCATTTGGGGGGAATTCATCTCTCTTTAATATAAAGTTGGATGCGGAACCCAAATTACGTGTACTACAATTTAAAGCAA AGGAGTAGAAAGACAGAGCTGGGATGTTTCTGTCACATCAGCTCCACTTTCAGTGAAAGCATCACTTGGGATTAATATGGGGATGCAGCA TTATGATGTGGGTCAAGGAATTAAGTTAGGGAATGGCACAGCCCAAAGAAGGAAAAGGCAGGGAGCGAGGGAGAAGACTATATTGTACAC ACCTTATATTTACGTATGAGACGTTTATAGCCGAAATGATCTTTTCAAGTTAAATTTTATGCCTTTTATTTCTTAAACAAATGTATGATT ACATCAAGGCTTCAAAAATACTCACATGGCTATGTTTTAGCCAGTGATGCTAAAGGTTGTATTGCATATATACATATATATATATATATA TATATATATATATATATATATATATATATATATATATATTTTAATTTGATAGTATTGTGCATAGAGCCACGTATGTTTTTGTGTATTTGT TAATGGTTTGAATATAAACACTATATGGCAGTGTCTTTCCACCTTGGGTCCCAGGGAAGTTTTGTGGAGGAGCTCAGGACACTAATACAC CAGGTAGAACACAAGGTCATTTGCTAACTAGCTTGGAAACTGGATGAGGTCATAGCAGTGCTTGATTGCGTGGAATTGTGCTGAGTTGGT GTTGACATGTGCTTTGGGGCTTTTACACCAGTTCCTTTCAATGGTTTGCAAGGAAGCCACAGCTGGTGGTATCTGAGTTGACTTGACAGA ACACTGTCTTGAAGACAATGGCTTACTCCAGGAGACCCACAGGTATGACCTTCTAGGAAGCTCCAGTTCGATGGGCCCAATTCTTACAAA CATGTGGTTAATGCCATGGACAGAAGAAGGCAGCAGGTGGCAGAATGGGGTGCATGAAGGTTTCTGAAAATTAACACTGCTTGTGTTTTT >In-frame_RHBDL3_ENST00000269051_chr17_30625223_+_CTLA4_ENST00000295854_chr2_204735309_+_1211nt ACCCCGTCTCGGCCATGGGCGAGCACCCCAGCCCGGGCCCCGCGGTGGCCGCCTGCGCCGAGGCGGAGCGCATCGAGGAGCTGGAACCCG AGGCCGAGGAGCGGCTGCCCGCGGCGCCGGAGGACCACTGGAAAGTCCTGTTTGATCAGTTTGACCCTGGGAACACAGGCTACATTAGCA CAGGCAAGTTCCGGAGTCTTCTGGAGAGCCACAGCTCCAAGCTGGACCCGCACAAAAGGGAGGTCCTCCTGGCTCTTGCCGACAGCCACG CGGATGGGCAGATCGGCTACCAGGATTTTGTCAGCCTAATGAGCAACAAGCGTTCCAACAGCTTCCGCCAAGCCATCCTGCAGGGCAACC GCAGGCTAAGCAGCAAGGCCCTGCTGGAGGAGAAGGGGCTGAGCCTCTCGCAGCGACTTATCCGCCATGTGGCCTATGAGACCCTGCCCC GGGAAATTGACCGCAAGTGGTACTATGACAGCTACACCTGCTGCCCCCCACCCTGGTTCATGATCACAGTCACGCTGCTGGAGGTTGCCT TTTTCCTCTACAATGGGGTGTCACTAGGTCAATTTGTACTGCAGGTAACTCATCCACGTTACTTGAAGAACTCCCTGGTTTACCACCCAC AGCTGCGAGCACAGGTTTGGCGCTACCTGACATACATCTTCATGCATGCAGGGATAGAACACCTGGGACTCAATGTGGTGCTGCAGCTGC TGGTGGGGGTGCCCCTGGAGATGGTGCATGGAGCCACCCGAATTGGGCTTGTCTACGTGGCCGGTGTTGTGGCAGCAATGCACGTGGCCC AGCCTGCTGTGGTACTGGCCAGCAGCCGAGGCATCGCCAGCTTTGTGTGTGAGTATGCATCTCCAGGCAAAGCCACTGAGGTCCGGGTGA CAGTGCTTCGGCAGGCTGACAGCCAGGTGACTGAAGTCTGTGCGGCAACCTACATGATGGGGAATGAGTTGACCTTCCTAGATGATTCCA TCTGCACGGGCACCTCCAGTGGAAATCAAGTGAACCTCACTATCCAAGGACTGAGGGCCATGGACACGGGACTCTACATCTGCAAGGTGG AGCTCATGTACCCACCGCCATACTACCTGGGCATAGGCAACGGAACCCAGATTTATGTAATTGCTAAAGAAAAGAAGCCCTCTTACAACA >In-frame_RHBDL3_ENST00000269051_chr17_30625223_+_CTLA4_ENST00000472206_chr2_204735309_+_963nt ACCCCGTCTCGGCCATGGGCGAGCACCCCAGCCCGGGCCCCGCGGTGGCCGCCTGCGCCGAGGCGGAGCGCATCGAGGAGCTGGAACCCG AGGCCGAGGAGCGGCTGCCCGCGGCGCCGGAGGACCACTGGAAAGTCCTGTTTGATCAGTTTGACCCTGGGAACACAGGCTACATTAGCA CAGGCAAGTTCCGGAGTCTTCTGGAGAGCCACAGCTCCAAGCTGGACCCGCACAAAAGGGAGGTCCTCCTGGCTCTTGCCGACAGCCACG CGGATGGGCAGATCGGCTACCAGGATTTTGTCAGCCTAATGAGCAACAAGCGTTCCAACAGCTTCCGCCAAGCCATCCTGCAGGGCAACC GCAGGCTAAGCAGCAAGGCCCTGCTGGAGGAGAAGGGGCTGAGCCTCTCGCAGCGACTTATCCGCCATGTGGCCTATGAGACCCTGCCCC GGGAAATTGACCGCAAGTGGTACTATGACAGCTACACCTGCTGCCCCCCACCCTGGTTCATGATCACAGTCACGCTGCTGGAGGTTGCCT TTTTCCTCTACAATGGGGTGTCACTAGGTCAATTTGTACTGCAGGTAACTCATCCACGTTACTTGAAGAACTCCCTGGTTTACCACCCAC AGCTGCGAGCACAGGTTTGGCGCTACCTGACATACATCTTCATGCATGCAGGGATAGAACACCTGGGACTCAATGTGGTGCTGCAGCTGC TGGTGGGGGTGCCCCTGGAGATGGTGCATGGAGCCACCCGAATTGGGCTTGTCTACGTGGCCGGTGTTGTGGCAGCAATGCACGTGGCCC AGCCTGCTGTGGTACTGGCCAGCAGCCGAGGCATCGCCAGCTTTGTGTCTAAAGAAAAGAAGCCCTCTTACAACAGGGGTCTATGTGAAA >In-frame_RHBDL3_ENST00000538145_chr17_30625223_+_CTLA4_ENST00000302823_chr2_204735309_+_2481nt CCCCGTCTCGGCCATGGGCGAGCACCCCAGCCCGGGCCCCGCGGTGGCCGCCTGCGCCGAGGCGGAGCGCATCGAGGAGCTGGAACCCGA GGCCGAGGAGCGGCTGCCCGCGGCGCCGGAGGACTTTGACCCTGGGAACACAGGCTACATTAGCACAGGCAAGTTCCGGAGTCTTCTGGA GAGCCACAGCTCCAAGCTGGACCCGCACAAAAGGGAGGTCCTCCTGGCTCTTGCCGACAGCCACGCGGATGGGCAGATCGGCTACCAGGA TTTTGTCAGCCTAATGAGCAACAAGCGTTCCAACAGCTTCCGCCAAGCCATCCTGCAGGGCAACCGCAGGCTAAGCAGCAAGGCCCTGCT GGAGGAGAAGGGGCTGAGCCTCTCGCAGCGACTTATCCGCCATGTGGCCTATGAGACCCTGCCCCGGGAAATTGACCGCAAGTGGTACTA TGACAGCTACACCTGCTGCCCCCCACCCTGGTTCATGATCACAGTCACGCTGCTGGAGGTTGCCTTTTTCCTCTACAATGGGGTGTCACT AGGTCAATTTGTACTGCAGGTAACTCATCCACGTTACTTGAAGAACTCCCTGGTTTACCACCCACAGCTGCGAGCACAGGTTTGGCGCTA CCTGACATACATCTTCATGCATGCAGGGATAGAACACCTGGGACTCAATGTGGTGCTGCAGCTGCTGGTGGGGGTGCCCCTGGAGATGGT GCATGGAGCCACCCGAATTGGGCTTGTCTACGTGGCCGGTGTTGTGGCAGCAATGCACGTGGCCCAGCCTGCTGTGGTACTGGCCAGCAG CCGAGGCATCGCCAGCTTTGTGTGTGAGTATGCATCTCCAGGCAAAGCCACTGAGGTCCGGGTGACAGTGCTTCGGCAGGCTGACAGCCA GGTGACTGAAGTCTGTGCGGCAACCTACATGATGGGGAATGAGTTGACCTTCCTAGATGATTCCATCTGCACGGGCACCTCCAGTGGAAA TCAAGTGAACCTCACTATCCAAGGACTGAGGGCCATGGACACGGGACTCTACATCTGCAAGGTGGAGCTCATGTACCCACCGCCATACTA CCTGGGCATAGGCAACGGAACCCAGATTTATGTAATTGATCCAGAACCGTGCCCAGATTCTGACTTCCTCCTCTGGATCCTTGCAGCAGT TAGTTCGGGGTTGTTTTTTTATAGCTTTCTCCTCACAGCTGTTTCTTTGAGCAAAATGCTAAAGAAAAGAAGCCCTCTTACAACAGGGGT CTATGTGAAAATGCCCCCAACAGAGCCAGAATGTGAAAAGCAATTTCAGCCTTATTTTATTCCCATCAATTGAGAAACCATTATGAAGAA GAGAGTCCATATTTCAATTTCCAAGAGCTGAGGCAATTCTAACTTTTTTGCTATCCAGCTATTTTTATTTGTTTGTGCATTTGGGGGGAA TTCATCTCTCTTTAATATAAAGTTGGATGCGGAACCCAAATTACGTGTACTACAATTTAAAGCAAAGGAGTAGAAAGACAGAGCTGGGAT GTTTCTGTCACATCAGCTCCACTTTCAGTGAAAGCATCACTTGGGATTAATATGGGGATGCAGCATTATGATGTGGGTCAAGGAATTAAG TTAGGGAATGGCACAGCCCAAAGAAGGAAAAGGCAGGGAGCGAGGGAGAAGACTATATTGTACACACCTTATATTTACGTATGAGACGTT TATAGCCGAAATGATCTTTTCAAGTTAAATTTTATGCCTTTTATTTCTTAAACAAATGTATGATTACATCAAGGCTTCAAAAATACTCAC ATGGCTATGTTTTAGCCAGTGATGCTAAAGGTTGTATTGCATATATACATATATATATATATATATATATATATATATATATATATATAT ATATATATATATATTTTAATTTGATAGTATTGTGCATAGAGCCACGTATGTTTTTGTGTATTTGTTAATGGTTTGAATATAAACACTATA TGGCAGTGTCTTTCCACCTTGGGTCCCAGGGAAGTTTTGTGGAGGAGCTCAGGACACTAATACACCAGGTAGAACACAAGGTCATTTGCT AACTAGCTTGGAAACTGGATGAGGTCATAGCAGTGCTTGATTGCGTGGAATTGTGCTGAGTTGGTGTTGACATGTGCTTTGGGGCTTTTA CACCAGTTCCTTTCAATGGTTTGCAAGGAAGCCACAGCTGGTGGTATCTGAGTTGACTTGACAGAACACTGTCTTGAAGACAATGGCTTA CTCCAGGAGACCCACAGGTATGACCTTCTAGGAAGCTCCAGTTCGATGGGCCCAATTCTTACAAACATGTGGTTAATGCCATGGACAGAA GAAGGCAGCAGGTGGCAGAATGGGGTGCATGAAGGTTTCTGAAAATTAACACTGCTTGTGTTTTTAACTCAATATTTTCCATGAAAATGC >In-frame_RHBDL3_ENST00000538145_chr17_30625223_+_CTLA4_ENST00000295854_chr2_204735309_+_1186nt CCCCGTCTCGGCCATGGGCGAGCACCCCAGCCCGGGCCCCGCGGTGGCCGCCTGCGCCGAGGCGGAGCGCATCGAGGAGCTGGAACCCGA GGCCGAGGAGCGGCTGCCCGCGGCGCCGGAGGACTTTGACCCTGGGAACACAGGCTACATTAGCACAGGCAAGTTCCGGAGTCTTCTGGA GAGCCACAGCTCCAAGCTGGACCCGCACAAAAGGGAGGTCCTCCTGGCTCTTGCCGACAGCCACGCGGATGGGCAGATCGGCTACCAGGA TTTTGTCAGCCTAATGAGCAACAAGCGTTCCAACAGCTTCCGCCAAGCCATCCTGCAGGGCAACCGCAGGCTAAGCAGCAAGGCCCTGCT GGAGGAGAAGGGGCTGAGCCTCTCGCAGCGACTTATCCGCCATGTGGCCTATGAGACCCTGCCCCGGGAAATTGACCGCAAGTGGTACTA TGACAGCTACACCTGCTGCCCCCCACCCTGGTTCATGATCACAGTCACGCTGCTGGAGGTTGCCTTTTTCCTCTACAATGGGGTGTCACT AGGTCAATTTGTACTGCAGGTAACTCATCCACGTTACTTGAAGAACTCCCTGGTTTACCACCCACAGCTGCGAGCACAGGTTTGGCGCTA CCTGACATACATCTTCATGCATGCAGGGATAGAACACCTGGGACTCAATGTGGTGCTGCAGCTGCTGGTGGGGGTGCCCCTGGAGATGGT GCATGGAGCCACCCGAATTGGGCTTGTCTACGTGGCCGGTGTTGTGGCAGCAATGCACGTGGCCCAGCCTGCTGTGGTACTGGCCAGCAG CCGAGGCATCGCCAGCTTTGTGTGTGAGTATGCATCTCCAGGCAAAGCCACTGAGGTCCGGGTGACAGTGCTTCGGCAGGCTGACAGCCA GGTGACTGAAGTCTGTGCGGCAACCTACATGATGGGGAATGAGTTGACCTTCCTAGATGATTCCATCTGCACGGGCACCTCCAGTGGAAA TCAAGTGAACCTCACTATCCAAGGACTGAGGGCCATGGACACGGGACTCTACATCTGCAAGGTGGAGCTCATGTACCCACCGCCATACTA CCTGGGCATAGGCAACGGAACCCAGATTTATGTAATTGCTAAAGAAAAGAAGCCCTCTTACAACAGGGGTCTATGTGAAAATGCCCCCAA >In-frame_RHBDL3_ENST00000538145_chr17_30625223_+_CTLA4_ENST00000472206_chr2_204735309_+_938nt CCCCGTCTCGGCCATGGGCGAGCACCCCAGCCCGGGCCCCGCGGTGGCCGCCTGCGCCGAGGCGGAGCGCATCGAGGAGCTGGAACCCGA GGCCGAGGAGCGGCTGCCCGCGGCGCCGGAGGACTTTGACCCTGGGAACACAGGCTACATTAGCACAGGCAAGTTCCGGAGTCTTCTGGA GAGCCACAGCTCCAAGCTGGACCCGCACAAAAGGGAGGTCCTCCTGGCTCTTGCCGACAGCCACGCGGATGGGCAGATCGGCTACCAGGA TTTTGTCAGCCTAATGAGCAACAAGCGTTCCAACAGCTTCCGCCAAGCCATCCTGCAGGGCAACCGCAGGCTAAGCAGCAAGGCCCTGCT GGAGGAGAAGGGGCTGAGCCTCTCGCAGCGACTTATCCGCCATGTGGCCTATGAGACCCTGCCCCGGGAAATTGACCGCAAGTGGTACTA TGACAGCTACACCTGCTGCCCCCCACCCTGGTTCATGATCACAGTCACGCTGCTGGAGGTTGCCTTTTTCCTCTACAATGGGGTGTCACT AGGTCAATTTGTACTGCAGGTAACTCATCCACGTTACTTGAAGAACTCCCTGGTTTACCACCCACAGCTGCGAGCACAGGTTTGGCGCTA CCTGACATACATCTTCATGCATGCAGGGATAGAACACCTGGGACTCAATGTGGTGCTGCAGCTGCTGGTGGGGGTGCCCCTGGAGATGGT GCATGGAGCCACCCGAATTGGGCTTGTCTACGTGGCCGGTGTTGTGGCAGCAATGCACGTGGCCCAGCCTGCTGTGGTACTGGCCAGCAG CCGAGGCATCGCCAGCTTTGTGTCTAAAGAAAAGAAGCCCTCTTACAACAGGGGTCTATGTGAAAATGCCCCCAACAGAGCCAGAATGTG >In-frame_RHBDL3_ENST00000536287_chr17_30625223_+_CTLA4_ENST00000302823_chr2_204735309_+_2320nt ATGTCAGAAACATCCGAGGACTACAGAGACCTTGGTGATAAGTGTGTCTTTCTTTCTCTCCTCTTCTTCCTCTCCTGCATGGCCTCCCTC TCTGCCAGCACTGGAAAGTCCTGTTTGATCAGATGAGCAACAAGCGTTCCAACAGCTTCCGCCAAGCCATCCTGCAGGGCAACCGCAGGC TAAGCAGCAAGGCCCTGCTGGAGGAGAAGGGGCTGAGCCTCTCGCAGCGACTTATCCGCCATGTGGCCTATGAGACCCTGCCCCGGGAAA TTGACCGCAAGTGGTACTATGACAGCTACACCTGCTGCCCCCCACCCTGGTTCATGATCACAGTCACGCTGCTGGAGGTTGCCTTTTTCC TCTACAATGGGGTGTCACTAGGTCAATTTGTACTGCAGGTAACTCATCCACGTTACTTGAAGAACTCCCTGGTTTACCACCCACAGCTGC GAGCACAGGTTTGGCGCTACCTGACATACATCTTCATGCATGCAGGGATAGAACACCTGGGACTCAATGTGGTGCTGCAGCTGCTGGTGG GGGTGCCCCTGGAGATGGTGCATGGAGCCACCCGAATTGGGCTTGTCTACGTGGCCGGTGTTGTGGCAGCAATGCACGTGGCCCAGCCTG CTGTGGTACTGGCCAGCAGCCGAGGCATCGCCAGCTTTGTGTGTGAGTATGCATCTCCAGGCAAAGCCACTGAGGTCCGGGTGACAGTGC TTCGGCAGGCTGACAGCCAGGTGACTGAAGTCTGTGCGGCAACCTACATGATGGGGAATGAGTTGACCTTCCTAGATGATTCCATCTGCA CGGGCACCTCCAGTGGAAATCAAGTGAACCTCACTATCCAAGGACTGAGGGCCATGGACACGGGACTCTACATCTGCAAGGTGGAGCTCA TGTACCCACCGCCATACTACCTGGGCATAGGCAACGGAACCCAGATTTATGTAATTGATCCAGAACCGTGCCCAGATTCTGACTTCCTCC TCTGGATCCTTGCAGCAGTTAGTTCGGGGTTGTTTTTTTATAGCTTTCTCCTCACAGCTGTTTCTTTGAGCAAAATGCTAAAGAAAAGAA GCCCTCTTACAACAGGGGTCTATGTGAAAATGCCCCCAACAGAGCCAGAATGTGAAAAGCAATTTCAGCCTTATTTTATTCCCATCAATT GAGAAACCATTATGAAGAAGAGAGTCCATATTTCAATTTCCAAGAGCTGAGGCAATTCTAACTTTTTTGCTATCCAGCTATTTTTATTTG TTTGTGCATTTGGGGGGAATTCATCTCTCTTTAATATAAAGTTGGATGCGGAACCCAAATTACGTGTACTACAATTTAAAGCAAAGGAGT AGAAAGACAGAGCTGGGATGTTTCTGTCACATCAGCTCCACTTTCAGTGAAAGCATCACTTGGGATTAATATGGGGATGCAGCATTATGA TGTGGGTCAAGGAATTAAGTTAGGGAATGGCACAGCCCAAAGAAGGAAAAGGCAGGGAGCGAGGGAGAAGACTATATTGTACACACCTTA TATTTACGTATGAGACGTTTATAGCCGAAATGATCTTTTCAAGTTAAATTTTATGCCTTTTATTTCTTAAACAAATGTATGATTACATCA AGGCTTCAAAAATACTCACATGGCTATGTTTTAGCCAGTGATGCTAAAGGTTGTATTGCATATATACATATATATATATATATATATATA TATATATATATATATATATATATATATATATATTTTAATTTGATAGTATTGTGCATAGAGCCACGTATGTTTTTGTGTATTTGTTAATGG TTTGAATATAAACACTATATGGCAGTGTCTTTCCACCTTGGGTCCCAGGGAAGTTTTGTGGAGGAGCTCAGGACACTAATACACCAGGTA GAACACAAGGTCATTTGCTAACTAGCTTGGAAACTGGATGAGGTCATAGCAGTGCTTGATTGCGTGGAATTGTGCTGAGTTGGTGTTGAC ATGTGCTTTGGGGCTTTTACACCAGTTCCTTTCAATGGTTTGCAAGGAAGCCACAGCTGGTGGTATCTGAGTTGACTTGACAGAACACTG TCTTGAAGACAATGGCTTACTCCAGGAGACCCACAGGTATGACCTTCTAGGAAGCTCCAGTTCGATGGGCCCAATTCTTACAAACATGTG GTTAATGCCATGGACAGAAGAAGGCAGCAGGTGGCAGAATGGGGTGCATGAAGGTTTCTGAAAATTAACACTGCTTGTGTTTTTAACTCA >In-frame_RHBDL3_ENST00000536287_chr17_30625223_+_CTLA4_ENST00000295854_chr2_204735309_+_1025nt ATGTCAGAAACATCCGAGGACTACAGAGACCTTGGTGATAAGTGTGTCTTTCTTTCTCTCCTCTTCTTCCTCTCCTGCATGGCCTCCCTC TCTGCCAGCACTGGAAAGTCCTGTTTGATCAGATGAGCAACAAGCGTTCCAACAGCTTCCGCCAAGCCATCCTGCAGGGCAACCGCAGGC TAAGCAGCAAGGCCCTGCTGGAGGAGAAGGGGCTGAGCCTCTCGCAGCGACTTATCCGCCATGTGGCCTATGAGACCCTGCCCCGGGAAA TTGACCGCAAGTGGTACTATGACAGCTACACCTGCTGCCCCCCACCCTGGTTCATGATCACAGTCACGCTGCTGGAGGTTGCCTTTTTCC TCTACAATGGGGTGTCACTAGGTCAATTTGTACTGCAGGTAACTCATCCACGTTACTTGAAGAACTCCCTGGTTTACCACCCACAGCTGC GAGCACAGGTTTGGCGCTACCTGACATACATCTTCATGCATGCAGGGATAGAACACCTGGGACTCAATGTGGTGCTGCAGCTGCTGGTGG GGGTGCCCCTGGAGATGGTGCATGGAGCCACCCGAATTGGGCTTGTCTACGTGGCCGGTGTTGTGGCAGCAATGCACGTGGCCCAGCCTG CTGTGGTACTGGCCAGCAGCCGAGGCATCGCCAGCTTTGTGTGTGAGTATGCATCTCCAGGCAAAGCCACTGAGGTCCGGGTGACAGTGC TTCGGCAGGCTGACAGCCAGGTGACTGAAGTCTGTGCGGCAACCTACATGATGGGGAATGAGTTGACCTTCCTAGATGATTCCATCTGCA CGGGCACCTCCAGTGGAAATCAAGTGAACCTCACTATCCAAGGACTGAGGGCCATGGACACGGGACTCTACATCTGCAAGGTGGAGCTCA TGTACCCACCGCCATACTACCTGGGCATAGGCAACGGAACCCAGATTTATGTAATTGCTAAAGAAAAGAAGCCCTCTTACAACAGGGGTC >In-frame_RHBDL3_ENST00000536287_chr17_30625223_+_CTLA4_ENST00000472206_chr2_204735309_+_777nt ATGTCAGAAACATCCGAGGACTACAGAGACCTTGGTGATAAGTGTGTCTTTCTTTCTCTCCTCTTCTTCCTCTCCTGCATGGCCTCCCTC TCTGCCAGCACTGGAAAGTCCTGTTTGATCAGATGAGCAACAAGCGTTCCAACAGCTTCCGCCAAGCCATCCTGCAGGGCAACCGCAGGC TAAGCAGCAAGGCCCTGCTGGAGGAGAAGGGGCTGAGCCTCTCGCAGCGACTTATCCGCCATGTGGCCTATGAGACCCTGCCCCGGGAAA TTGACCGCAAGTGGTACTATGACAGCTACACCTGCTGCCCCCCACCCTGGTTCATGATCACAGTCACGCTGCTGGAGGTTGCCTTTTTCC TCTACAATGGGGTGTCACTAGGTCAATTTGTACTGCAGGTAACTCATCCACGTTACTTGAAGAACTCCCTGGTTTACCACCCACAGCTGC GAGCACAGGTTTGGCGCTACCTGACATACATCTTCATGCATGCAGGGATAGAACACCTGGGACTCAATGTGGTGCTGCAGCTGCTGGTGG GGGTGCCCCTGGAGATGGTGCATGGAGCCACCCGAATTGGGCTTGTCTACGTGGCCGGTGTTGTGGCAGCAATGCACGTGGCCCAGCCTG CTGTGGTACTGGCCAGCAGCCGAGGCATCGCCAGCTTTGTGTCTAAAGAAAAGAAGCCCTCTTACAACAGGGGTCTATGTGAAAATGCCC |
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FusionGenePPI for RHBDL3_CTLA4 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
RHBDL3 | PTCRA, EIF2AK3, BIK, VCP | CTLA4 | CD80, AP2M1, CD86, CTLA4, FYN, LCK, LYN, PPP2R5A, JAK2, ELAVL1, STAT5A, STAT5B |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for RHBDL3_CTLA4 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Tgene | CTLA4 | P16410 | DB06186 | Ipilimumab | Cytotoxic T-lymphocyte protein 4 | biotech | approved |
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RelatedDiseases for RHBDL3_CTLA4 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | CTLA4 | C0018213 | Graves Disease | 3 | CTD_human |
Tgene | CTLA4 | C0036341 | Schizophrenia | 3 | PSYGENET |
Tgene | CTLA4 | C0003873 | Rheumatoid Arthritis | 2 | CTD_human |
Tgene | CTLA4 | C0005586 | Bipolar Disorder | 2 | PSYGENET |
Tgene | CTLA4 | C0041696 | Unipolar Depression | 2 | PSYGENET |
Tgene | CTLA4 | C1269683 | Major Depressive Disorder | 2 | PSYGENET |
Tgene | CTLA4 | C0002171 | Alopecia Areata | 1 | CTD_human |
Tgene | CTLA4 | C0018133 | Graft-vs-Host Disease | 1 | CTD_human |
Tgene | CTLA4 | C0023493 | Adult T-Cell Lymphoma/Leukemia | 1 | CTD_human |
Tgene | CTLA4 | C0025202 | melanoma | 1 | CTD_human |
Tgene | CTLA4 | C0029172 | Oral Submucous Fibrosis | 1 | CTD_human |
Tgene | CTLA4 | C0031117 | Peripheral Neuropathy | 1 | CTD_human |
Tgene | CTLA4 | C0079773 | Lymphoma, T-Cell, Cutaneous | 1 | CTD_human;HPO |
Tgene | CTLA4 | C3495559 | Juvenile arthritis | 1 | CTD_human |
Tgene | CTLA4 | C4015214 | AUTOIMMUNE LYMPHOPROLIFERATIVE SYNDROME, TYPE V | 1 | ORPHANET;UNIPROT |