![]() |
||||||
|
![]() | |
![]() | |
![]() | |
![]() | |
![]() | |
![]() |
Fusion gene ID: 31107 |
FusionGeneSummary for RGS12_ZNF587 |
![]() |
Fusion gene information | Fusion gene name: RGS12_ZNF587 | Fusion gene ID: 31107 | Hgene | Tgene | Gene symbol | RGS12 | ZNF587 | Gene ID | 6002 | 84914 |
Gene name | regulator of G protein signaling 12 | zinc finger protein 587 | |
Synonyms | - | ZF6 | |
Cytomap | 4p16.3 | 19q13.43 | |
Type of gene | protein-coding | protein-coding | |
Description | regulator of G-protein signaling 12regulator of G-protein signalling 12 | zinc finger protein 587zinc finger protein zfp6 | |
Modification date | 20180519 | 20180523 | |
UniProtAcc | O14924 | Q96SQ5 | |
Ensembl transtripts involved in fusion gene | ENST00000543385, ENST00000336727, ENST00000344733, ENST00000382788, ENST00000306648, ENST00000338806, ENST00000508158, ENST00000538395, | ENST00000339656, ENST00000423137, ENST00000419854, ENST00000596433, | |
Fusion gene scores | * DoF score | 6 X 6 X 4=144 | 2 X 2 X 1=4 |
# samples | 8 | 2 | |
** MAII score | log2(8/144*10)=-0.84799690655495 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(2/4*10)=2.32192809488736 | |
Context | PubMed: RGS12 [Title/Abstract] AND ZNF587 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
![]() |
Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | T05253 | RGS12 | chr4 | 3295499 | + | ZNF587 | chr19 | 58307020 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-intron | ENST00000543385 | ENST00000339656 | RGS12 | chr4 | 3295499 | + | ZNF587 | chr19 | 58307020 | + |
intron-intron | ENST00000543385 | ENST00000423137 | RGS12 | chr4 | 3295499 | + | ZNF587 | chr19 | 58307020 | + |
intron-intron | ENST00000543385 | ENST00000419854 | RGS12 | chr4 | 3295499 | + | ZNF587 | chr19 | 58307020 | + |
intron-intron | ENST00000543385 | ENST00000596433 | RGS12 | chr4 | 3295499 | + | ZNF587 | chr19 | 58307020 | + |
intron-intron | ENST00000336727 | ENST00000339656 | RGS12 | chr4 | 3295499 | + | ZNF587 | chr19 | 58307020 | + |
intron-intron | ENST00000336727 | ENST00000423137 | RGS12 | chr4 | 3295499 | + | ZNF587 | chr19 | 58307020 | + |
intron-intron | ENST00000336727 | ENST00000419854 | RGS12 | chr4 | 3295499 | + | ZNF587 | chr19 | 58307020 | + |
intron-intron | ENST00000336727 | ENST00000596433 | RGS12 | chr4 | 3295499 | + | ZNF587 | chr19 | 58307020 | + |
intron-intron | ENST00000344733 | ENST00000339656 | RGS12 | chr4 | 3295499 | + | ZNF587 | chr19 | 58307020 | + |
intron-intron | ENST00000344733 | ENST00000423137 | RGS12 | chr4 | 3295499 | + | ZNF587 | chr19 | 58307020 | + |
intron-intron | ENST00000344733 | ENST00000419854 | RGS12 | chr4 | 3295499 | + | ZNF587 | chr19 | 58307020 | + |
intron-intron | ENST00000344733 | ENST00000596433 | RGS12 | chr4 | 3295499 | + | ZNF587 | chr19 | 58307020 | + |
intron-intron | ENST00000382788 | ENST00000339656 | RGS12 | chr4 | 3295499 | + | ZNF587 | chr19 | 58307020 | + |
intron-intron | ENST00000382788 | ENST00000423137 | RGS12 | chr4 | 3295499 | + | ZNF587 | chr19 | 58307020 | + |
intron-intron | ENST00000382788 | ENST00000419854 | RGS12 | chr4 | 3295499 | + | ZNF587 | chr19 | 58307020 | + |
intron-intron | ENST00000382788 | ENST00000596433 | RGS12 | chr4 | 3295499 | + | ZNF587 | chr19 | 58307020 | + |
intron-intron | ENST00000306648 | ENST00000339656 | RGS12 | chr4 | 3295499 | + | ZNF587 | chr19 | 58307020 | + |
intron-intron | ENST00000306648 | ENST00000423137 | RGS12 | chr4 | 3295499 | + | ZNF587 | chr19 | 58307020 | + |
intron-intron | ENST00000306648 | ENST00000419854 | RGS12 | chr4 | 3295499 | + | ZNF587 | chr19 | 58307020 | + |
intron-intron | ENST00000306648 | ENST00000596433 | RGS12 | chr4 | 3295499 | + | ZNF587 | chr19 | 58307020 | + |
intron-intron | ENST00000338806 | ENST00000339656 | RGS12 | chr4 | 3295499 | + | ZNF587 | chr19 | 58307020 | + |
intron-intron | ENST00000338806 | ENST00000423137 | RGS12 | chr4 | 3295499 | + | ZNF587 | chr19 | 58307020 | + |
intron-intron | ENST00000338806 | ENST00000419854 | RGS12 | chr4 | 3295499 | + | ZNF587 | chr19 | 58307020 | + |
intron-intron | ENST00000338806 | ENST00000596433 | RGS12 | chr4 | 3295499 | + | ZNF587 | chr19 | 58307020 | + |
intron-intron | ENST00000508158 | ENST00000339656 | RGS12 | chr4 | 3295499 | + | ZNF587 | chr19 | 58307020 | + |
intron-intron | ENST00000508158 | ENST00000423137 | RGS12 | chr4 | 3295499 | + | ZNF587 | chr19 | 58307020 | + |
intron-intron | ENST00000508158 | ENST00000419854 | RGS12 | chr4 | 3295499 | + | ZNF587 | chr19 | 58307020 | + |
intron-intron | ENST00000508158 | ENST00000596433 | RGS12 | chr4 | 3295499 | + | ZNF587 | chr19 | 58307020 | + |
intron-intron | ENST00000538395 | ENST00000339656 | RGS12 | chr4 | 3295499 | + | ZNF587 | chr19 | 58307020 | + |
intron-intron | ENST00000538395 | ENST00000423137 | RGS12 | chr4 | 3295499 | + | ZNF587 | chr19 | 58307020 | + |
intron-intron | ENST00000538395 | ENST00000419854 | RGS12 | chr4 | 3295499 | + | ZNF587 | chr19 | 58307020 | + |
intron-intron | ENST00000538395 | ENST00000596433 | RGS12 | chr4 | 3295499 | + | ZNF587 | chr19 | 58307020 | + |
Top |
FusionProtFeatures for RGS12_ZNF587 |
![]() |
Hgene | Tgene |
RGS12 | ZNF587 |
May be involved in transcriptional regulation. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Top |
FusionGeneSequence for RGS12_ZNF587 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
Top |
FusionGenePPI for RGS12_ZNF587 |
![]() |
![]() |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for RGS12_ZNF587 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for RGS12_ZNF587 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | RGS12 | C0036341 | Schizophrenia | 1 | CTD_human |