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Fusion gene ID: 31057 |
FusionGeneSummary for RFX2_MLLT1 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: RFX2_MLLT1 | Fusion gene ID: 31057 | Hgene | Tgene | Gene symbol | RFX2 | MLLT1 | Gene ID | 5990 | 4298 |
| Gene name | regulatory factor X2 | MLLT1, super elongation complex subunit | |
| Synonyms | - | ENL|LTG19|YEATS1 | |
| Cytomap | 19p13.3 | 19p13.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | DNA-binding protein RFX2HLA class II regulatory factor RFX2regulatory factor X 2regulatory factor X, 2 (influences HLA class II expression)trans-acting regulatory factor 2 | protein ENLCTC-503J8.6ENL/MLL fusionMLL/ENL fusion proteinMLLT1/MLL fusionYEATS domain-containing protein 1myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog); translocated to, 1myeloid/lymphoid or mixed-lineage leukemia (trithorax homol | |
| Modification date | 20180523 | 20180519 | |
| UniProtAcc | P48378 | Q03111 | |
| Ensembl transtripts involved in fusion gene | ENST00000303657, ENST00000359161, ENST00000592546, ENST00000587700, | ENST00000252674, ENST00000585588, | |
| Fusion gene scores | * DoF score | 5 X 5 X 5=125 | 10 X 20 X 6=1200 |
| # samples | 6 | 25 | |
| ** MAII score | log2(6/125*10)=-1.05889368905357 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(25/1200*10)=-2.26303440583379 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: RFX2 [Title/Abstract] AND MLLT1 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | ESCA | TCGA-Z6-A8JD-01A | RFX2 | chr19 | 6110404 | - | MLLT1 | chr19 | 6230724 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5UTR-3CDS | ENST00000303657 | ENST00000252674 | RFX2 | chr19 | 6110404 | - | MLLT1 | chr19 | 6230724 | - |
| 5UTR-intron | ENST00000303657 | ENST00000585588 | RFX2 | chr19 | 6110404 | - | MLLT1 | chr19 | 6230724 | - |
| intron-3CDS | ENST00000359161 | ENST00000252674 | RFX2 | chr19 | 6110404 | - | MLLT1 | chr19 | 6230724 | - |
| intron-intron | ENST00000359161 | ENST00000585588 | RFX2 | chr19 | 6110404 | - | MLLT1 | chr19 | 6230724 | - |
| 5UTR-3CDS | ENST00000592546 | ENST00000252674 | RFX2 | chr19 | 6110404 | - | MLLT1 | chr19 | 6230724 | - |
| 5UTR-intron | ENST00000592546 | ENST00000585588 | RFX2 | chr19 | 6110404 | - | MLLT1 | chr19 | 6230724 | - |
| intron-3CDS | ENST00000587700 | ENST00000252674 | RFX2 | chr19 | 6110404 | - | MLLT1 | chr19 | 6230724 | - |
| intron-intron | ENST00000587700 | ENST00000585588 | RFX2 | chr19 | 6110404 | - | MLLT1 | chr19 | 6230724 | - |
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FusionProtFeatures for RFX2_MLLT1 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| RFX2 | MLLT1 |
| Transcription factor that acts as a key regulator ofspermatogenesis. Acts by regulating expression of genes requiredfor the haploid phase during spermiogenesis, such as genesrequired for cilium assembly and function (By similarity).Recognizes and binds the X-box, a regulatory motif with DNAsequence 5'-GTNRCC(0-3N)RGYAAC-3' present on promoters(PubMed:10330134). Probably activates transcription of the testis-specific histone gene HIST1H1T (By similarity).{ECO:0000250|UniProtKB:P48379, ECO:0000269|PubMed:10330134}. | Component of the super elongation complex (SEC), acomplex required to increase the catalytic rate of RNA polymeraseII transcription by suppressing transient pausing by thepolymerase at multiple sites along the DNA.{ECO:0000269|PubMed:20159561, ECO:0000269|PubMed:20471948}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for RFX2_MLLT1 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for RFX2_MLLT1 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| RFX2 | RFX6, MDFI, RFX4, FBXL3, C1orf94, FOXJ1, FOXJ2, FOXN3, FOXN2 | MLLT1 | CBX8, AFF1, CDK9, WDR5, DOT1L, MLLT3, RFX5, AFF4, CSNK2A1, BCOR, RFXAP, MLLT10, ACACA, CHD1, ELL, SIRT1, MLLT6, CCNT1, KMT2A, BRD4, ELL2, PAF1, POLR2A, MED26, HIST3H3, HIST1H1B, EAF1, ELL3, RNF2, RPL12, MRPL12, HIST2H2AC, H2AFX, HIST2H2BE, HIST4H4, BMI1, PIP4K2A, EPB41L2, CAMKV, BPIFB1, YAF2, RYBP, DENND2D, ARRB2, TRIM25 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for RFX2_MLLT1 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for RFX2_MLLT1 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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