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Fusion gene ID: 30986 |
FusionGeneSummary for REST_CNOT1 |
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Fusion gene information | Fusion gene name: REST_CNOT1 | Fusion gene ID: 30986 | Hgene | Tgene | Gene symbol | REST | CNOT1 | Gene ID | 5978 | 23019 |
Gene name | RE1 silencing transcription factor | CCR4-NOT transcription complex subunit 1 | |
Synonyms | GINGF5|HGF5|NRSF|WT6|XBR | AD-005|CDC39|NOT1|NOT1H | |
Cytomap | 4q12 | 16q21 | |
Type of gene | protein-coding | protein-coding | |
Description | RE1-silencing transcription factorneural-restrictive silencer factorneuron restrictive silencer factorrepressor binding to the X2 box | CCR4-NOT transcription complex subunit 1CCR4-associated factor 1NOT1 (negative regulator of transcription 1, yeast) homologadrenal gland protein AD-005negative regulator of transcription subunit 1 homolog | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | Q13127 | A5YKK6 | |
Ensembl transtripts involved in fusion gene | ENST00000309042, ENST00000514063, | ENST00000317147, ENST00000569240, ENST00000441024, ENST00000569732, ENST00000245138, | |
Fusion gene scores | * DoF score | 4 X 4 X 1=16 | 4 X 5 X 3=60 |
# samples | 4 | 5 | |
** MAII score | log2(4/16*10)=1.32192809488736 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(5/60*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: REST [Title/Abstract] AND CNOT1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | REST | GO:0000122 | negative regulation of transcription by RNA polymerase II | 8568247|21284946 |
Hgene | REST | GO:0043922 | negative regulation by host of viral transcription | 17555596 |
Hgene | REST | GO:0045892 | negative regulation of transcription, DNA-templated | 7697725|10449787|10734093|17984088|19342457 |
Hgene | REST | GO:0045893 | positive regulation of transcription, DNA-templated | 17984088 |
Hgene | REST | GO:0070933 | histone H4 deacetylation | 17555596 |
Hgene | REST | GO:0071385 | cellular response to glucocorticoid stimulus | 17984088 |
Tgene | CNOT1 | GO:0000122 | negative regulation of transcription by RNA polymerase II | 16778766 |
Tgene | CNOT1 | GO:0010606 | positive regulation of cytoplasmic mRNA processing body assembly | 21976065 |
Tgene | CNOT1 | GO:0017148 | negative regulation of translation | 24736845 |
Tgene | CNOT1 | GO:0033147 | negative regulation of intracellular estrogen receptor signaling pathway | 16778766 |
Tgene | CNOT1 | GO:0035195 | gene silencing by miRNA | 23172285|24768540 |
Tgene | CNOT1 | GO:0048387 | negative regulation of retinoic acid receptor signaling pathway | 16778766 |
Tgene | CNOT1 | GO:0060213 | positive regulation of nuclear-transcribed mRNA poly(A) tail shortening | 23644599 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | U22680 | REST | chr4 | 57800857 | + | CNOT1 | chr16 | 58559926 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
3UTR-3CDS | ENST00000309042 | ENST00000317147 | REST | chr4 | 57800857 | + | CNOT1 | chr16 | 58559926 | + |
3UTR-3CDS | ENST00000309042 | ENST00000569240 | REST | chr4 | 57800857 | + | CNOT1 | chr16 | 58559926 | + |
3UTR-intron | ENST00000309042 | ENST00000441024 | REST | chr4 | 57800857 | + | CNOT1 | chr16 | 58559926 | + |
3UTR-intron | ENST00000309042 | ENST00000569732 | REST | chr4 | 57800857 | + | CNOT1 | chr16 | 58559926 | + |
3UTR-intron | ENST00000309042 | ENST00000245138 | REST | chr4 | 57800857 | + | CNOT1 | chr16 | 58559926 | + |
intron-3CDS | ENST00000514063 | ENST00000317147 | REST | chr4 | 57800857 | + | CNOT1 | chr16 | 58559926 | + |
intron-3CDS | ENST00000514063 | ENST00000569240 | REST | chr4 | 57800857 | + | CNOT1 | chr16 | 58559926 | + |
intron-intron | ENST00000514063 | ENST00000441024 | REST | chr4 | 57800857 | + | CNOT1 | chr16 | 58559926 | + |
intron-intron | ENST00000514063 | ENST00000569732 | REST | chr4 | 57800857 | + | CNOT1 | chr16 | 58559926 | + |
intron-intron | ENST00000514063 | ENST00000245138 | REST | chr4 | 57800857 | + | CNOT1 | chr16 | 58559926 | + |
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FusionProtFeatures for REST_CNOT1 |
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Hgene | Tgene |
REST | CNOT1 |
Transcriptional repressor which binds neuron-restrictivesilencer element (NRSE) and represses neuronal gene transcriptionin non-neuronal cells. Restricts the expression of neuronal genesby associating with two distinct corepressors, mSin3 and CoREST,which in turn recruit histone deacetylase to the promoters ofREST-regulated genes. Mediates repression by recruiting the BHCcomplex at RE1/NRSE sites which acts by deacetylating anddemethylating specific sites on histones, thereby acting as achromatin modifier. Transcriptional repression by REST-CDYL viathe recruitment of histone methyltransferase EHMT2 may beimportant in transformation suppression.{ECO:0000269|PubMed:12399542, ECO:0000269|PubMed:19061646,ECO:0000269|PubMed:26551668, ECO:0000269|PubMed:7697725,ECO:0000269|PubMed:7871435, ECO:0000269|PubMed:8568247}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for REST_CNOT1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for REST_CNOT1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for REST_CNOT1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for REST_CNOT1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | REST | C0015923 | Fetal Alcohol Syndrome | 1 | PSYGENET |
Hgene | REST | C0027708 | Nephroblastoma | 1 | CTD_human;HPO;ORPHANET |
Hgene | REST | C0036341 | Schizophrenia | 1 | PSYGENET |
Hgene | REST | C0036572 | Seizures | 1 | CTD_human |
Hgene | REST | C1269683 | Major Depressive Disorder | 1 | PSYGENET |
Hgene | REST | C3891301 | WILMS TUMOR, SUSCEPTIBILITY TO | 1 | UNIPROT |