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Fusion gene ID: 30929 |
FusionGeneSummary for REG3G_CPA1 |
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Fusion gene information | Fusion gene name: REG3G_CPA1 | Fusion gene ID: 30929 | Hgene | Tgene | Gene symbol | REG3G | CPA1 | Gene ID | 130120 | 1357 |
Gene name | regenerating family member 3 gamma | carboxypeptidase A1 | |
Synonyms | LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 | CPA | |
Cytomap | 2p12 | 7q32.2 | |
Type of gene | protein-coding | protein-coding | |
Description | regenerating islet-derived protein 3-gammaREG-3-gammapancreatitis-associated protein 1Bpancreatitis-associated protein IBreg III-gammaregenerating gene IIIregenerating islet-derived 3 gammaregenerating islet-derived protein III-gamma | carboxypeptidase A1carboxypeptidase A1 (pancreatic)pancreatic carboxypeptidase A | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | Q6UW15 | P15085 | |
Ensembl transtripts involved in fusion gene | ENST00000393897, ENST00000272324, ENST00000409471, | ENST00000011292, ENST00000484324, | |
Fusion gene scores | * DoF score | 3 X 3 X 1=9 | 5 X 6 X 2=60 |
# samples | 2 | 5 | |
** MAII score | log2(2/9*10)=1.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(5/60*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: REG3G [Title/Abstract] AND CPA1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | REG3G | GO:0044278 | cell wall disruption in other organism | 16931762 |
Hgene | REG3G | GO:0051715 | cytolysis in other organism | 16931762 |
Hgene | REG3G | GO:0061844 | antimicrobial humoral immune response mediated by antimicrobial peptide | 16931762 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | PAAD | TCGA-HZ-8003-01A | REG3G | chr2 | 79255554 | + | CPA1 | chr7 | 130021954 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
3UTR-3CDS | ENST00000393897 | ENST00000011292 | REG3G | chr2 | 79255554 | + | CPA1 | chr7 | 130021954 | + |
3UTR-3CDS | ENST00000393897 | ENST00000484324 | REG3G | chr2 | 79255554 | + | CPA1 | chr7 | 130021954 | + |
3UTR-3CDS | ENST00000272324 | ENST00000011292 | REG3G | chr2 | 79255554 | + | CPA1 | chr7 | 130021954 | + |
3UTR-3CDS | ENST00000272324 | ENST00000484324 | REG3G | chr2 | 79255554 | + | CPA1 | chr7 | 130021954 | + |
intron-3CDS | ENST00000409471 | ENST00000011292 | REG3G | chr2 | 79255554 | + | CPA1 | chr7 | 130021954 | + |
intron-3CDS | ENST00000409471 | ENST00000484324 | REG3G | chr2 | 79255554 | + | CPA1 | chr7 | 130021954 | + |
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FusionProtFeatures for REG3G_CPA1 |
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Hgene | Tgene |
REG3G | CPA1 |
Bactericidal C-type lectin which acts exclusivelyagainst Gram-positive bacteria and mediates bacterial killing bybinding to surface-exposed carbohydrate moieties of peptidoglycan.Restricts bacterial colonization of the intestinal epithelialsurface and consequently limits activation of adaptive immuneresponses by the microbiota. The uncleaved form has bacteriostaticactivity, whereas the cleaved form has bactericidal activityagainst L.monocytogenes and methicillin-resistant S.aureus.Regulates keratinocyte proliferation and differentiation afterskin injury. {ECO:0000269|PubMed:19095652}. | Carboxypeptidase that catalyzes the release of a C-terminal amino acid, but has little or no action with -Asp, -Glu,-Arg, -Lys or -Pro. {ECO:0000269|PubMed:8806703}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for REG3G_CPA1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for REG3G_CPA1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
REG3G | CPA1 | ARRB1 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for REG3G_CPA1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for REG3G_CPA1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | CPA1 | C0149521 | Pancreatitis, Chronic | 1 | CTD_human |