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Fusion gene ID: 30898 |
FusionGeneSummary for RDH13_RUSC1 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: RDH13_RUSC1 | Fusion gene ID: 30898 | Hgene | Tgene | Gene symbol | RDH13 | RUSC1 | Gene ID | 112724 | 23623 |
| Gene name | retinol dehydrogenase 13 | RUN and SH3 domain containing 1 | |
| Synonyms | SDR7C3 | NESCA | |
| Cytomap | 19q13.42 | 1q22 | |
| Type of gene | protein-coding | protein-coding | |
| Description | retinol dehydrogenase 13retinol dehydrogenase 13 (all-trans and 9-cis)retinol dehydrogenase 13 (all-trans/9-cis)short chain dehydrogenase/reductase family 7C member 3 | RUN and SH3 domain-containing protein 1new molecule containing SH3 at the carboxy-terminus | |
| Modification date | 20180519 | 20180519 | |
| UniProtAcc | Q8NBN7 | Q9BVN2 | |
| Ensembl transtripts involved in fusion gene | ENST00000415061, ENST00000396247, ENST00000592423, | ENST00000368354, ENST00000368352, ENST00000368347, ENST00000462780, ENST00000368349, ENST00000292254, | |
| Fusion gene scores | * DoF score | 4 X 3 X 4=48 | 3 X 3 X 3=27 |
| # samples | 4 | 3 | |
| ** MAII score | log2(4/48*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(3/27*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
| Context | PubMed: RDH13 [Title/Abstract] AND RUSC1 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Tgene | RUSC1 | GO:0000209 | protein polyubiquitination | 19365808 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | BRCA | TCGA-A8-A08F-01A | RDH13 | chr19 | 55568021 | - | RUSC1 | chr1 | 155297941 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| Frame-shift | ENST00000415061 | ENST00000368354 | RDH13 | chr19 | 55568021 | - | RUSC1 | chr1 | 155297941 | + |
| Frame-shift | ENST00000415061 | ENST00000368352 | RDH13 | chr19 | 55568021 | - | RUSC1 | chr1 | 155297941 | + |
| Frame-shift | ENST00000415061 | ENST00000368347 | RDH13 | chr19 | 55568021 | - | RUSC1 | chr1 | 155297941 | + |
| 5CDS-3UTR | ENST00000415061 | ENST00000462780 | RDH13 | chr19 | 55568021 | - | RUSC1 | chr1 | 155297941 | + |
| 5CDS-3UTR | ENST00000415061 | ENST00000368349 | RDH13 | chr19 | 55568021 | - | RUSC1 | chr1 | 155297941 | + |
| 5CDS-3UTR | ENST00000415061 | ENST00000292254 | RDH13 | chr19 | 55568021 | - | RUSC1 | chr1 | 155297941 | + |
| Frame-shift | ENST00000396247 | ENST00000368354 | RDH13 | chr19 | 55568021 | - | RUSC1 | chr1 | 155297941 | + |
| Frame-shift | ENST00000396247 | ENST00000368352 | RDH13 | chr19 | 55568021 | - | RUSC1 | chr1 | 155297941 | + |
| Frame-shift | ENST00000396247 | ENST00000368347 | RDH13 | chr19 | 55568021 | - | RUSC1 | chr1 | 155297941 | + |
| 5CDS-3UTR | ENST00000396247 | ENST00000462780 | RDH13 | chr19 | 55568021 | - | RUSC1 | chr1 | 155297941 | + |
| 5CDS-3UTR | ENST00000396247 | ENST00000368349 | RDH13 | chr19 | 55568021 | - | RUSC1 | chr1 | 155297941 | + |
| 5CDS-3UTR | ENST00000396247 | ENST00000292254 | RDH13 | chr19 | 55568021 | - | RUSC1 | chr1 | 155297941 | + |
| intron-3CDS | ENST00000592423 | ENST00000368354 | RDH13 | chr19 | 55568021 | - | RUSC1 | chr1 | 155297941 | + |
| intron-3CDS | ENST00000592423 | ENST00000368352 | RDH13 | chr19 | 55568021 | - | RUSC1 | chr1 | 155297941 | + |
| intron-3CDS | ENST00000592423 | ENST00000368347 | RDH13 | chr19 | 55568021 | - | RUSC1 | chr1 | 155297941 | + |
| intron-3UTR | ENST00000592423 | ENST00000462780 | RDH13 | chr19 | 55568021 | - | RUSC1 | chr1 | 155297941 | + |
| intron-3UTR | ENST00000592423 | ENST00000368349 | RDH13 | chr19 | 55568021 | - | RUSC1 | chr1 | 155297941 | + |
| intron-3UTR | ENST00000592423 | ENST00000292254 | RDH13 | chr19 | 55568021 | - | RUSC1 | chr1 | 155297941 | + |
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FusionProtFeatures for RDH13_RUSC1 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| RDH13 | RUSC1 |
| Does not exhibit retinol dehydrogenase (RDH) activity invitro. | Putative signaling adapter which may play a role inneuronal differentiation. May be involved in regulation of NGF-dependent neurite outgrowth. Proposed to play a role in neuronalvesicular trafficking, specifically involving pre-synapticmembrane proteins. Seems to be involved in signaling pathways thatare regulated by the prolonged activation of MAPK. Can regulatethe polyubiquitination of IKBKG and thus may be involved inregulation of the NF-kappa-B pathway.{ECO:0000269|PubMed:19365808}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for RDH13_RUSC1 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for RDH13_RUSC1 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| RDH13 | MINOS1, GADD45G, CYP3A5, PSKH1, TP53, IDH3A, NT5E, GNAI3, L3HYPDH, NAPSA, OLFM4, DDOST, KDSR, ETFA, RAB1A, RAB1B, RPN1, RPN2, COQ9, NDUFA4, PROSER2, EMILIN1, ZNF44, PCDHGA5, LSM5, PON1, SLC39A12, PCDHB5, ALPI, DEFA5, SLC15A1, ATP6V0D1 | RUSC1 | IKBKG, TRAF6, APP, PNMA1, STUB1, RBPMS, WWP2, FAM9B, DVL2, HNRNPH2, UBE2S, FAM83H |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for RDH13_RUSC1 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
| Hgene | RDH13 | Q8NBN7 | DB00162 | Vitamin A | Retinol dehydrogenase 13 | small molecule | approved|nutraceutical|vet_approved |
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RelatedDiseases for RDH13_RUSC1 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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