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Fusion gene ID: 30756 |
FusionGeneSummary for RBM3_F3 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: RBM3_F3 | Fusion gene ID: 30756 | Hgene | Tgene | Gene symbol | RBM3 | F3 | Gene ID | 5935 | 2152 |
| Gene name | RNA binding motif protein 3 | coagulation factor III, tissue factor | |
| Synonyms | IS1-RNPL|RNPL | CD142|TF|TFA | |
| Cytomap | Xp11.23 | 1p21.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | RNA-binding protein 3RNA binding motif (RNP1, RRM) protein 3 | tissue factorcoagulation factor III (thromboplastin, tissue factor) | |
| Modification date | 20180523 | 20180527 | |
| UniProtAcc | P98179 | P13726 | |
| Ensembl transtripts involved in fusion gene | ENST00000466764, ENST00000376759, ENST00000430348, ENST00000376755, ENST00000354480, | ENST00000334047, ENST00000370207, ENST00000480356, | |
| Fusion gene scores | * DoF score | 6 X 6 X 1=36 | 3 X 3 X 1=9 |
| # samples | 6 | 3 | |
| ** MAII score | log2(6/36*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(3/9*10)=1.73696559416621 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
| Context | PubMed: RBM3 [Title/Abstract] AND F3 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Tgene | F3 | GO:0001938 | positive regulation of endothelial cell proliferation | 17898544 |
| Tgene | F3 | GO:0002541 | activation of plasma proteins involved in acute inflammatory response | 17469850 |
| Tgene | F3 | GO:0006919 | activation of cysteine-type endopeptidase activity involved in apoptotic process | 17898544 |
| Tgene | F3 | GO:0007596 | blood coagulation | 8632006|24998411 |
| Tgene | F3 | GO:0010641 | positive regulation of platelet-derived growth factor receptor signaling pathway | 17991872 |
| Tgene | F3 | GO:0016485 | protein processing | 24998411 |
| Tgene | F3 | GO:0045766 | positive regulation of angiogenesis | 17898544 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS3.1 | BU676293 | RBM3 | chrX | 48436439 | - | F3 | chr1 | 94995621 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-3UTR | ENST00000466764 | ENST00000334047 | RBM3 | chrX | 48436439 | - | F3 | chr1 | 94995621 | + |
| intron-3UTR | ENST00000466764 | ENST00000370207 | RBM3 | chrX | 48436439 | - | F3 | chr1 | 94995621 | + |
| intron-intron | ENST00000466764 | ENST00000480356 | RBM3 | chrX | 48436439 | - | F3 | chr1 | 94995621 | + |
| 3UTR-3UTR | ENST00000376759 | ENST00000334047 | RBM3 | chrX | 48436439 | - | F3 | chr1 | 94995621 | + |
| 3UTR-3UTR | ENST00000376759 | ENST00000370207 | RBM3 | chrX | 48436439 | - | F3 | chr1 | 94995621 | + |
| 3UTR-intron | ENST00000376759 | ENST00000480356 | RBM3 | chrX | 48436439 | - | F3 | chr1 | 94995621 | + |
| 3UTR-3UTR | ENST00000430348 | ENST00000334047 | RBM3 | chrX | 48436439 | - | F3 | chr1 | 94995621 | + |
| 3UTR-3UTR | ENST00000430348 | ENST00000370207 | RBM3 | chrX | 48436439 | - | F3 | chr1 | 94995621 | + |
| 3UTR-intron | ENST00000430348 | ENST00000480356 | RBM3 | chrX | 48436439 | - | F3 | chr1 | 94995621 | + |
| intron-3UTR | ENST00000376755 | ENST00000334047 | RBM3 | chrX | 48436439 | - | F3 | chr1 | 94995621 | + |
| intron-3UTR | ENST00000376755 | ENST00000370207 | RBM3 | chrX | 48436439 | - | F3 | chr1 | 94995621 | + |
| intron-intron | ENST00000376755 | ENST00000480356 | RBM3 | chrX | 48436439 | - | F3 | chr1 | 94995621 | + |
| 3UTR-3UTR | ENST00000354480 | ENST00000334047 | RBM3 | chrX | 48436439 | - | F3 | chr1 | 94995621 | + |
| 3UTR-3UTR | ENST00000354480 | ENST00000370207 | RBM3 | chrX | 48436439 | - | F3 | chr1 | 94995621 | + |
| 3UTR-intron | ENST00000354480 | ENST00000480356 | RBM3 | chrX | 48436439 | - | F3 | chr1 | 94995621 | + |
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FusionProtFeatures for RBM3_F3 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| RBM3 | F3 |
| Cold-inducible mRNA binding protein that enhances globalprotein synthesis at both physiological and mild hypothermictemperatures. Reduces the relative abundance of microRNAs, whenoverexpressed. Enhances phosphorylation of translation initiationfactors and active polysome formation (By similarity).{ECO:0000250}. | Initiates blood coagulation by forming a complex withcirculating factor VII or VIIa. The [TF:VIIa] complex activatesfactors IX or X by specific limited protolysis. TF plays a role innormal hemostasis by initiating the cell-surface assembly andpropagation of the coagulation protease cascade.{ECO:0000269|PubMed:12652293}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for RBM3_F3 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for RBM3_F3 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for RBM3_F3 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
| Tgene | F3 | P13726 | DB00036 | Coagulation factor VIIa Recombinant Human | Tissue factor | biotech | approved |
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RelatedDiseases for RBM3_F3 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | RBM3 | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |
| Hgene | RBM3 | C1458155 | Mammary Neoplasms | 1 | CTD_human |
| Tgene | F3 | C0012739 | Disseminated Intravascular Coagulation | 3 | CTD_human |
| Tgene | F3 | C0040053 | Thrombosis | 2 | CTD_human |
| Tgene | F3 | C0023487 | Acute Promyelocytic Leukemia | 1 | CTD_human |
| Tgene | F3 | C0023890 | Liver Cirrhosis | 1 | CTD_human |
| Tgene | F3 | C0027726 | Nephrotic Syndrome | 1 | CTD_human |
| Tgene | F3 | C0034155 | Purpura, Thrombotic Thrombocytopenic | 1 | CTD_human |
| Tgene | F3 | C0042487 | Venous Thrombosis | 1 | CTD_human |
| Tgene | F3 | C0151744 | Myocardial Ischemia | 1 | CTD_human |
| Tgene | F3 | C1458155 | Mammary Neoplasms | 1 | CTD_human |
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