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Fusion gene ID: 30667 |
FusionGeneSummary for RBFOX3_C4orf22 |
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Fusion gene information | Fusion gene name: RBFOX3_C4orf22 | Fusion gene ID: 30667 | Hgene | Tgene | Gene symbol | RBFOX3 | C4orf22 | Gene ID | 146713 |
Gene name | RNA binding fox-1 homolog 3 | ||
Synonyms | FOX-3|FOX3|HRNBP3|NEUN | ||
Cytomap | 17q25.3 | ||
Type of gene | protein-coding | ||
Description | RNA binding protein fox-1 homolog 3RNA binding protein, fox-1 homolog 3fox-1 homolog Chexaribonucleotide binding protein 3neuN antigenneuronal nuclei antigen | ||
Modification date | 20180523 | ||
UniProtAcc | A6NFN3 | Q6V702 | |
Ensembl transtripts involved in fusion gene | ENST00000453134, ENST00000583458, ENST00000415831, ENST00000582043, ENST00000580155, ENST00000584778, ENST00000578887, | ENST00000358105, ENST00000508675, ENST00000512931, | |
Fusion gene scores | * DoF score | 2 X 2 X 1=4 | 5 X 5 X 3=75 |
# samples | 2 | 5 | |
** MAII score | log2(2/4*10)=2.32192809488736 | log2(5/75*10)=-0.584962500721156 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: RBFOX3 [Title/Abstract] AND C4orf22 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | DA120291 | RBFOX3 | chr17 | 77303842 | - | C4orf22 | chr4 | 81550834 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-intron | ENST00000453134 | ENST00000358105 | RBFOX3 | chr17 | 77303842 | - | C4orf22 | chr4 | 81550834 | - |
intron-intron | ENST00000453134 | ENST00000508675 | RBFOX3 | chr17 | 77303842 | - | C4orf22 | chr4 | 81550834 | - |
intron-intron | ENST00000453134 | ENST00000512931 | RBFOX3 | chr17 | 77303842 | - | C4orf22 | chr4 | 81550834 | - |
intron-intron | ENST00000583458 | ENST00000358105 | RBFOX3 | chr17 | 77303842 | - | C4orf22 | chr4 | 81550834 | - |
intron-intron | ENST00000583458 | ENST00000508675 | RBFOX3 | chr17 | 77303842 | - | C4orf22 | chr4 | 81550834 | - |
intron-intron | ENST00000583458 | ENST00000512931 | RBFOX3 | chr17 | 77303842 | - | C4orf22 | chr4 | 81550834 | - |
intron-intron | ENST00000415831 | ENST00000358105 | RBFOX3 | chr17 | 77303842 | - | C4orf22 | chr4 | 81550834 | - |
intron-intron | ENST00000415831 | ENST00000508675 | RBFOX3 | chr17 | 77303842 | - | C4orf22 | chr4 | 81550834 | - |
intron-intron | ENST00000415831 | ENST00000512931 | RBFOX3 | chr17 | 77303842 | - | C4orf22 | chr4 | 81550834 | - |
intron-intron | ENST00000582043 | ENST00000358105 | RBFOX3 | chr17 | 77303842 | - | C4orf22 | chr4 | 81550834 | - |
intron-intron | ENST00000582043 | ENST00000508675 | RBFOX3 | chr17 | 77303842 | - | C4orf22 | chr4 | 81550834 | - |
intron-intron | ENST00000582043 | ENST00000512931 | RBFOX3 | chr17 | 77303842 | - | C4orf22 | chr4 | 81550834 | - |
intron-intron | ENST00000580155 | ENST00000358105 | RBFOX3 | chr17 | 77303842 | - | C4orf22 | chr4 | 81550834 | - |
intron-intron | ENST00000580155 | ENST00000508675 | RBFOX3 | chr17 | 77303842 | - | C4orf22 | chr4 | 81550834 | - |
intron-intron | ENST00000580155 | ENST00000512931 | RBFOX3 | chr17 | 77303842 | - | C4orf22 | chr4 | 81550834 | - |
intron-intron | ENST00000584778 | ENST00000358105 | RBFOX3 | chr17 | 77303842 | - | C4orf22 | chr4 | 81550834 | - |
intron-intron | ENST00000584778 | ENST00000508675 | RBFOX3 | chr17 | 77303842 | - | C4orf22 | chr4 | 81550834 | - |
intron-intron | ENST00000584778 | ENST00000512931 | RBFOX3 | chr17 | 77303842 | - | C4orf22 | chr4 | 81550834 | - |
intron-intron | ENST00000578887 | ENST00000358105 | RBFOX3 | chr17 | 77303842 | - | C4orf22 | chr4 | 81550834 | - |
intron-intron | ENST00000578887 | ENST00000508675 | RBFOX3 | chr17 | 77303842 | - | C4orf22 | chr4 | 81550834 | - |
intron-intron | ENST00000578887 | ENST00000512931 | RBFOX3 | chr17 | 77303842 | - | C4orf22 | chr4 | 81550834 | - |
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FusionProtFeatures for RBFOX3_C4orf22 |
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Hgene | Tgene |
RBFOX3 | C4orf22 |
Pre-mRNA alternative splicing regulator. Regulatesalternative splicing of RBFOX2 to enhance the production of mRNAspecies that are targeted for nonsense-mediated decay (NMD).{ECO:0000250|UniProtKB:Q8BIF2}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for RBFOX3_C4orf22 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for RBFOX3_C4orf22 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for RBFOX3_C4orf22 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for RBFOX3_C4orf22 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |