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Fusion gene ID: 30563 |
FusionGeneSummary for RASSF3_ITGA7 |
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Fusion gene information | Fusion gene name: RASSF3_ITGA7 | Fusion gene ID: 30563 | Hgene | Tgene | Gene symbol | RASSF3 | ITGA7 | Gene ID | 283349 | 3679 |
Gene name | Ras association domain family member 3 | integrin subunit alpha 7 | |
Synonyms | RASSF5 | - | |
Cytomap | 12q14.2 | 12q13.2 | |
Type of gene | protein-coding | protein-coding | |
Description | ras association domain-containing protein 3Ras association (RalGDS/AF-6) domain family 3Ras association (RalGDS/AF-6) domain family member 3 | integrin alpha-7integrin alpha 7 chain | |
Modification date | 20180519 | 20180522 | |
UniProtAcc | Q86WH2 | Q13683 | |
Ensembl transtripts involved in fusion gene | ENST00000336061, ENST00000542104, ENST00000540088, | ENST00000553804, ENST00000257879, ENST00000347027, ENST00000452168, ENST00000394229, ENST00000257880, ENST00000394230, ENST00000555728, | |
Fusion gene scores | * DoF score | 11 X 5 X 11=605 | 3 X 3 X 3=27 |
# samples | 13 | 3 | |
** MAII score | log2(13/605*10)=-2.2184235191335 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(3/27*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: RASSF3 [Title/Abstract] AND ITGA7 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation | Oncogene involved fusion gene, in-frame and retained their domain. Tumor suppressor gene involved fusion gene, in-frame but not retained their domain. Tumor suppressor gene involved fusion gene, retained protein feature but frameshift. DDR (DNA damage repair) gene involved fusion gene, in-frame but not retained their domain. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | SKCM | TCGA-GN-A26D-06A | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000336061 | ENST00000553804 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
Frame-shift | ENST00000336061 | ENST00000257879 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
In-frame | ENST00000336061 | ENST00000347027 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
In-frame | ENST00000336061 | ENST00000452168 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
Frame-shift | ENST00000336061 | ENST00000394229 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
Frame-shift | ENST00000336061 | ENST00000257880 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
Frame-shift | ENST00000336061 | ENST00000394230 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
Frame-shift | ENST00000336061 | ENST00000555728 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
In-frame | ENST00000542104 | ENST00000553804 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
Frame-shift | ENST00000542104 | ENST00000257879 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
In-frame | ENST00000542104 | ENST00000347027 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
In-frame | ENST00000542104 | ENST00000452168 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
Frame-shift | ENST00000542104 | ENST00000394229 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
Frame-shift | ENST00000542104 | ENST00000257880 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
Frame-shift | ENST00000542104 | ENST00000394230 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
Frame-shift | ENST00000542104 | ENST00000555728 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
3UTR-3CDS | ENST00000540088 | ENST00000553804 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
3UTR-3CDS | ENST00000540088 | ENST00000257879 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
3UTR-3CDS | ENST00000540088 | ENST00000347027 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
3UTR-3CDS | ENST00000540088 | ENST00000452168 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
3UTR-3CDS | ENST00000540088 | ENST00000394229 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
3UTR-3CDS | ENST00000540088 | ENST00000257880 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
3UTR-3CDS | ENST00000540088 | ENST00000394230 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
3UTR-3CDS | ENST00000540088 | ENST00000555728 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
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FusionProtFeatures for RASSF3_ITGA7 |
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Hgene | Tgene |
RASSF3 | ITGA7 |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 1107_1111 | 1061 | 1138 | Motif | Note=GFFKR motif |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 1107_1111 | 968 | 1045 | Motif | Note=GFFKR motif |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 1107_1111 | 1065 | 1142 | Motif | Note=GFFKR motif |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 1107_1111 | 1105 | 1182 | Motif | Note=GFFKR motif |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 1157_1176 | 1061 | 1138 | Region | Note=3 X 4 AA repeats of D-X-H-P |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 1157_1176 | 1142 | 1163 | Region | Note=3 X 4 AA repeats of D-X-H-P |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 1157_1176 | 968 | 1045 | Region | Note=3 X 4 AA repeats of D-X-H-P |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 1157_1176 | 1065 | 1142 | Region | Note=3 X 4 AA repeats of D-X-H-P |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 1157_1176 | 1105 | 1182 | Region | Note=3 X 4 AA repeats of D-X-H-P |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 1157_1160 | 1061 | 1138 | Repeat | Note=1 |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 1165_1168 | 1061 | 1138 | Repeat | Note=2 |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 1173_1176 | 1061 | 1138 | Repeat | Note=3 |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 1157_1160 | 1142 | 1163 | Repeat | Note=1 |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 1165_1168 | 1142 | 1163 | Repeat | Note=2 |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 1173_1176 | 1142 | 1163 | Repeat | Note=3 |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 1157_1160 | 968 | 1045 | Repeat | Note=1 |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 1165_1168 | 968 | 1045 | Repeat | Note=2 |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 1173_1176 | 968 | 1045 | Repeat | Note=3 |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 1157_1160 | 1065 | 1142 | Repeat | Note=1 |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 1165_1168 | 1065 | 1142 | Repeat | Note=2 |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 1173_1176 | 1065 | 1142 | Repeat | Note=3 |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 1157_1160 | 1105 | 1182 | Repeat | Note=1 |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 1165_1168 | 1105 | 1182 | Repeat | Note=2 |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 1173_1176 | 1105 | 1182 | Repeat | Note=3 |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 1104_1181 | 1061 | 1138 | Topological domain | Cytoplasmic |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 1104_1181 | 968 | 1045 | Topological domain | Cytoplasmic |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 1104_1181 | 1065 | 1142 | Topological domain | Cytoplasmic |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 1104_1181 | 1105 | 1182 | Topological domain | Cytoplasmic |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 1083_1103 | 1061 | 1138 | Transmembrane | Helical |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 1083_1103 | 968 | 1045 | Transmembrane | Helical |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 1083_1103 | 1065 | 1142 | Transmembrane | Helical |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >RASSF3 | chr12:65004523 | chr12:56079072 | ENST00000336061 | + | 2 | 6 | 187_234 | 37 | 239 | Domain | SARAH |
Hgene | >RASSF3 | chr12:65004523 | chr12:56079072 | ENST00000336061 | + | 2 | 6 | 79_186 | 37 | 239 | Domain | Ras-associating |
Hgene | >RASSF3 | chr12:65004523 | chr12:56079072 | ENST00000542104 | + | 1 | 5 | 187_234 | 37 | 239 | Domain | SARAH |
Hgene | >RASSF3 | chr12:65004523 | chr12:56079072 | ENST00000542104 | + | 1 | 5 | 79_186 | 37 | 239 | Domain | Ras-associating |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 372_380 | 1061 | 1138 | Calcium binding | Ontology_term=ECO:0000255 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 434_442 | 1061 | 1138 | Calcium binding | Ontology_term=ECO:0000255 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 492_500 | 1061 | 1138 | Calcium binding | Ontology_term=ECO:0000255 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 372_380 | 1142 | 1163 | Calcium binding | Ontology_term=ECO:0000255 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 434_442 | 1142 | 1163 | Calcium binding | Ontology_term=ECO:0000255 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 492_500 | 1142 | 1163 | Calcium binding | Ontology_term=ECO:0000255 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 372_380 | 968 | 1045 | Calcium binding | Ontology_term=ECO:0000255 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 434_442 | 968 | 1045 | Calcium binding | Ontology_term=ECO:0000255 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 492_500 | 968 | 1045 | Calcium binding | Ontology_term=ECO:0000255 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 372_380 | 1065 | 1142 | Calcium binding | Ontology_term=ECO:0000255 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 434_442 | 1065 | 1142 | Calcium binding | Ontology_term=ECO:0000255 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 492_500 | 1065 | 1142 | Calcium binding | Ontology_term=ECO:0000255 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 372_380 | 1105 | 1182 | Calcium binding | Ontology_term=ECO:0000255 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 434_442 | 1105 | 1182 | Calcium binding | Ontology_term=ECO:0000255 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 492_500 | 1105 | 1182 | Calcium binding | Ontology_term=ECO:0000255 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 953_958 | 1061 | 1138 | Compositional bias | Note=Poly-Arg |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 953_958 | 1142 | 1163 | Compositional bias | Note=Poly-Arg |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 953_958 | 968 | 1045 | Compositional bias | Note=Poly-Arg |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 953_958 | 1065 | 1142 | Compositional bias | Note=Poly-Arg |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 953_958 | 1105 | 1182 | Compositional bias | Note=Poly-Arg |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 1107_1111 | 1142 | 1163 | Motif | Note=GFFKR motif |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 110_175 | 1061 | 1138 | Repeat | FG-GAP 2 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 185_238 | 1061 | 1138 | Repeat | FG-GAP 3 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 292_349 | 1061 | 1138 | Repeat | FG-GAP 4 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 350_411 | 1061 | 1138 | Repeat | FG-GAP 5 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 35_103 | 1061 | 1138 | Repeat | FG-GAP 1 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 412_467 | 1061 | 1138 | Repeat | FG-GAP 6 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 471_530 | 1061 | 1138 | Repeat | FG-GAP 7 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 110_175 | 1142 | 1163 | Repeat | FG-GAP 2 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 185_238 | 1142 | 1163 | Repeat | FG-GAP 3 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 292_349 | 1142 | 1163 | Repeat | FG-GAP 4 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 350_411 | 1142 | 1163 | Repeat | FG-GAP 5 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 35_103 | 1142 | 1163 | Repeat | FG-GAP 1 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 412_467 | 1142 | 1163 | Repeat | FG-GAP 6 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 471_530 | 1142 | 1163 | Repeat | FG-GAP 7 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 110_175 | 968 | 1045 | Repeat | FG-GAP 2 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 185_238 | 968 | 1045 | Repeat | FG-GAP 3 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 292_349 | 968 | 1045 | Repeat | FG-GAP 4 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 350_411 | 968 | 1045 | Repeat | FG-GAP 5 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 35_103 | 968 | 1045 | Repeat | FG-GAP 1 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 412_467 | 968 | 1045 | Repeat | FG-GAP 6 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 471_530 | 968 | 1045 | Repeat | FG-GAP 7 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 110_175 | 1065 | 1142 | Repeat | FG-GAP 2 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 185_238 | 1065 | 1142 | Repeat | FG-GAP 3 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 292_349 | 1065 | 1142 | Repeat | FG-GAP 4 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 350_411 | 1065 | 1142 | Repeat | FG-GAP 5 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 35_103 | 1065 | 1142 | Repeat | FG-GAP 1 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 412_467 | 1065 | 1142 | Repeat | FG-GAP 6 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 471_530 | 1065 | 1142 | Repeat | FG-GAP 7 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 110_175 | 1105 | 1182 | Repeat | FG-GAP 2 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 185_238 | 1105 | 1182 | Repeat | FG-GAP 3 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 292_349 | 1105 | 1182 | Repeat | FG-GAP 4 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 350_411 | 1105 | 1182 | Repeat | FG-GAP 5 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 35_103 | 1105 | 1182 | Repeat | FG-GAP 1 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 412_467 | 1105 | 1182 | Repeat | FG-GAP 6 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 471_530 | 1105 | 1182 | Repeat | FG-GAP 7 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 34_1082 | 1061 | 1138 | Topological domain | Extracellular |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 1104_1181 | 1142 | 1163 | Topological domain | Cytoplasmic |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 34_1082 | 1142 | 1163 | Topological domain | Extracellular |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 34_1082 | 968 | 1045 | Topological domain | Extracellular |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 34_1082 | 1065 | 1142 | Topological domain | Extracellular |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 34_1082 | 1105 | 1182 | Topological domain | Extracellular |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 1083_1103 | 1142 | 1163 | Transmembrane | Helical |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 1083_1103 | 1105 | 1182 | Transmembrane | Helical |
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FusionGeneSequence for RASSF3_ITGA7 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_RASSF3_ENST00000336061_chr12_65004523_+_ITGA7_ENST00000553804_chr12_56079072_-_114aa MSSGYSSLEEDAEDFFFTARTSFFRRAPQGKPRSGQQMGFFKRAKHPEATVPQYHAVKIPREDRQQFKEEKTGTILRNNWGSPRREGPDA >In-frame_RASSF3_ENST00000336061_chr12_65004523_+_ITGA7_ENST00000347027_chr12_56079072_-_114aa MSSGYSSLEEDAEDFFFTARTSFFRRAPQGKPRSGQQMGFFKRAKHPEATVPQYHAVKIPREDRQQFKEEKTGTILRNNWGSPRREGPDA >In-frame_RASSF3_ENST00000336061_chr12_65004523_+_ITGA7_ENST00000452168_chr12_56079072_-_114aa MSSGYSSLEEDAEDFFFTARTSFFRRAPQGKPRSGQQMGFFKRAKHPEATVPQYHAVKIPREDRQQFKEEKTGTILRNNWGSPRREGPDA >In-frame_RASSF3_ENST00000542104_chr12_65004523_+_ITGA7_ENST00000553804_chr12_56079072_-_114aa MSSGYSSLEEDAEDFFFTARTSFFRRAPQGKPRSGQQMGFFKRAKHPEATVPQYHAVKIPREDRQQFKEEKTGTILRNNWGSPRREGPDA >In-frame_RASSF3_ENST00000542104_chr12_65004523_+_ITGA7_ENST00000347027_chr12_56079072_-_114aa MSSGYSSLEEDAEDFFFTARTSFFRRAPQGKPRSGQQMGFFKRAKHPEATVPQYHAVKIPREDRQQFKEEKTGTILRNNWGSPRREGPDA >In-frame_RASSF3_ENST00000542104_chr12_65004523_+_ITGA7_ENST00000452168_chr12_56079072_-_114aa MSSGYSSLEEDAEDFFFTARTSFFRRAPQGKPRSGQQMGFFKRAKHPEATVPQYHAVKIPREDRQQFKEEKTGTILRNNWGSPRREGPDA |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_RASSF3_ENST00000336061_chr12_65004523_+_ITGA7_ENST00000553804_chr12_56079072_-_342nt ATGAGCAGCGGCTACAGCAGCCTGGAGGAGGACGCCGAGGACTTCTTCTTCACCGCCAGGACCTCCTTCTTCAGGAGAGCGCCCCAGGGC AAGCCCCGCTCCGGCCAACAAATGGGATTCTTCAAACGGGCGAAGCACCCCGAGGCCACCGTGCCCCAGTACCATGCGGTGAAGATTCCT CGGGAAGACCGACAGCAGTTCAAGGAGGAGAAGACGGGCACCATCCTGAGGAACAACTGGGGCAGCCCCCGGCGGGAGGGCCCGGATGCA >In-frame_RASSF3_ENST00000336061_chr12_65004523_+_ITGA7_ENST00000347027_chr12_56079072_-_342nt ATGAGCAGCGGCTACAGCAGCCTGGAGGAGGACGCCGAGGACTTCTTCTTCACCGCCAGGACCTCCTTCTTCAGGAGAGCGCCCCAGGGC AAGCCCCGCTCCGGCCAACAAATGGGATTCTTCAAACGGGCGAAGCACCCCGAGGCCACCGTGCCCCAGTACCATGCGGTGAAGATTCCT CGGGAAGACCGACAGCAGTTCAAGGAGGAGAAGACGGGCACCATCCTGAGGAACAACTGGGGCAGCCCCCGGCGGGAGGGCCCGGATGCA >In-frame_RASSF3_ENST00000336061_chr12_65004523_+_ITGA7_ENST00000452168_chr12_56079072_-_342nt ATGAGCAGCGGCTACAGCAGCCTGGAGGAGGACGCCGAGGACTTCTTCTTCACCGCCAGGACCTCCTTCTTCAGGAGAGCGCCCCAGGGC AAGCCCCGCTCCGGCCAACAAATGGGATTCTTCAAACGGGCGAAGCACCCCGAGGCCACCGTGCCCCAGTACCATGCGGTGAAGATTCCT CGGGAAGACCGACAGCAGTTCAAGGAGGAGAAGACGGGCACCATCCTGAGGAACAACTGGGGCAGCCCCCGGCGGGAGGGCCCGGATGCA >In-frame_RASSF3_ENST00000542104_chr12_65004523_+_ITGA7_ENST00000553804_chr12_56079072_-_342nt ATGAGCAGCGGCTACAGCAGCCTGGAGGAGGACGCCGAGGACTTCTTCTTCACCGCCAGGACCTCCTTCTTCAGGAGAGCGCCCCAGGGC AAGCCCCGCTCCGGCCAACAAATGGGATTCTTCAAACGGGCGAAGCACCCCGAGGCCACCGTGCCCCAGTACCATGCGGTGAAGATTCCT CGGGAAGACCGACAGCAGTTCAAGGAGGAGAAGACGGGCACCATCCTGAGGAACAACTGGGGCAGCCCCCGGCGGGAGGGCCCGGATGCA >In-frame_RASSF3_ENST00000542104_chr12_65004523_+_ITGA7_ENST00000347027_chr12_56079072_-_342nt ATGAGCAGCGGCTACAGCAGCCTGGAGGAGGACGCCGAGGACTTCTTCTTCACCGCCAGGACCTCCTTCTTCAGGAGAGCGCCCCAGGGC AAGCCCCGCTCCGGCCAACAAATGGGATTCTTCAAACGGGCGAAGCACCCCGAGGCCACCGTGCCCCAGTACCATGCGGTGAAGATTCCT CGGGAAGACCGACAGCAGTTCAAGGAGGAGAAGACGGGCACCATCCTGAGGAACAACTGGGGCAGCCCCCGGCGGGAGGGCCCGGATGCA >In-frame_RASSF3_ENST00000542104_chr12_65004523_+_ITGA7_ENST00000452168_chr12_56079072_-_342nt ATGAGCAGCGGCTACAGCAGCCTGGAGGAGGACGCCGAGGACTTCTTCTTCACCGCCAGGACCTCCTTCTTCAGGAGAGCGCCCCAGGGC AAGCCCCGCTCCGGCCAACAAATGGGATTCTTCAAACGGGCGAAGCACCCCGAGGCCACCGTGCCCCAGTACCATGCGGTGAAGATTCCT CGGGAAGACCGACAGCAGTTCAAGGAGGAGAAGACGGGCACCATCCTGAGGAACAACTGGGGCAGCCCCCGGCGGGAGGGCCCGGATGCA |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_RASSF3_ENST00000336061_chr12_65004523_+_ITGA7_ENST00000553804_chr12_56079072_-_875nt GCTGCATAAGGACTGCCCGGGGCTGCGCGACGGGACCGGCAGCATGAGCAGCGGCTACAGCAGCCTGGAGGAGGACGCCGAGGACTTCTT CTTCACCGCCAGGACCTCCTTCTTCAGGAGAGCGCCCCAGGGCAAGCCCCGCTCCGGCCAACAAATGGGATTCTTCAAACGGGCGAAGCA CCCCGAGGCCACCGTGCCCCAGTACCATGCGGTGAAGATTCCTCGGGAAGACCGACAGCAGTTCAAGGAGGAGAAGACGGGCACCATCCT GAGGAACAACTGGGGCAGCCCCCGGCGGGAGGGCCCGGATGCACACCCCATCCTGGCTGCTGACGGGCATCCCGAGCTGGGCCCCGATGG GCATCCAGGGCCAGGCACCGCCTAGGTTCCCATGTCCCAGCCTGGCCTGTGGCTGCCCTCCATCCCTTCCCCAGAGATGGCTCCTTGGGA TGAAGAGGGTAGAGTGGGCTGCTGGTGTCGCATCAAGATTTGGCAGGATCGGCTTCCTCAGGGGCACAGACCTCTCCCACCCACAAGAAC TCCTCCCACCCAACTTCCCCTTAGAGTGCTGTGAGATGAGAGTGGGTAAATCAGGGACAGGGCCATGGGGTAGGGTGAGAAGGGCAGGGG TGTCCTGATGCAAAGGTGGGGAGAAGGGATCCTAATCCCTTCCTCTCCCATTCACCCTGTGTAACAGGACCCCAAGGACCTGCCTCCCCG GAAGTGCCTTAACCTAGAGGGTCGGGGAGGAGGTTGTGTCACTGACTCAGGCTGCTCCTTCTCTAGTTTCCCCTCTCATCTGACCTTAGT >In-frame_RASSF3_ENST00000336061_chr12_65004523_+_ITGA7_ENST00000347027_chr12_56079072_-_871nt GCTGCATAAGGACTGCCCGGGGCTGCGCGACGGGACCGGCAGCATGAGCAGCGGCTACAGCAGCCTGGAGGAGGACGCCGAGGACTTCTT CTTCACCGCCAGGACCTCCTTCTTCAGGAGAGCGCCCCAGGGCAAGCCCCGCTCCGGCCAACAAATGGGATTCTTCAAACGGGCGAAGCA CCCCGAGGCCACCGTGCCCCAGTACCATGCGGTGAAGATTCCTCGGGAAGACCGACAGCAGTTCAAGGAGGAGAAGACGGGCACCATCCT GAGGAACAACTGGGGCAGCCCCCGGCGGGAGGGCCCGGATGCACACCCCATCCTGGCTGCTGACGGGCATCCCGAGCTGGGCCCCGATGG GCATCCAGGGCCAGGCACCGCCTAGGTTCCCATGTCCCAGCCTGGCCTGTGGCTGCCCTCCATCCCTTCCCCAGAGATGGCTCCTTGGGA TGAAGAGGGTAGAGTGGGCTGCTGGTGTCGCATCAAGATTTGGCAGGATCGGCTTCCTCAGGGGCACAGACCTCTCCCACCCACAAGAAC TCCTCCCACCCAACTTCCCCTTAGAGTGCTGTGAGATGAGAGTGGGTAAATCAGGGACAGGGCCATGGGGTAGGGTGAGAAGGGCAGGGG TGTCCTGATGCAAAGGTGGGGAGAAGGGATCCTAATCCCTTCCTCTCCCATTCACCCTGTGTAACAGGACCCCAAGGACCTGCCTCCCCG GAAGTGCCTTAACCTAGAGGGTCGGGGAGGAGGTTGTGTCACTGACTCAGGCTGCTCCTTCTCTAGTTTCCCCTCTCATCTGACCTTAGT >In-frame_RASSF3_ENST00000336061_chr12_65004523_+_ITGA7_ENST00000452168_chr12_56079072_-_871nt GCTGCATAAGGACTGCCCGGGGCTGCGCGACGGGACCGGCAGCATGAGCAGCGGCTACAGCAGCCTGGAGGAGGACGCCGAGGACTTCTT CTTCACCGCCAGGACCTCCTTCTTCAGGAGAGCGCCCCAGGGCAAGCCCCGCTCCGGCCAACAAATGGGATTCTTCAAACGGGCGAAGCA CCCCGAGGCCACCGTGCCCCAGTACCATGCGGTGAAGATTCCTCGGGAAGACCGACAGCAGTTCAAGGAGGAGAAGACGGGCACCATCCT GAGGAACAACTGGGGCAGCCCCCGGCGGGAGGGCCCGGATGCACACCCCATCCTGGCTGCTGACGGGCATCCCGAGCTGGGCCCCGATGG GCATCCAGGGCCAGGCACCGCCTAGGTTCCCATGTCCCAGCCTGGCCTGTGGCTGCCCTCCATCCCTTCCCCAGAGATGGCTCCTTGGGA TGAAGAGGGTAGAGTGGGCTGCTGGTGTCGCATCAAGATTTGGCAGGATCGGCTTCCTCAGGGGCACAGACCTCTCCCACCCACAAGAAC TCCTCCCACCCAACTTCCCCTTAGAGTGCTGTGAGATGAGAGTGGGTAAATCAGGGACAGGGCCATGGGGTAGGGTGAGAAGGGCAGGGG TGTCCTGATGCAAAGGTGGGGAGAAGGGATCCTAATCCCTTCCTCTCCCATTCACCCTGTGTAACAGGACCCCAAGGACCTGCCTCCCCG GAAGTGCCTTAACCTAGAGGGTCGGGGAGGAGGTTGTGTCACTGACTCAGGCTGCTCCTTCTCTAGTTTCCCCTCTCATCTGACCTTAGT >In-frame_RASSF3_ENST00000542104_chr12_65004523_+_ITGA7_ENST00000553804_chr12_56079072_-_952nt GCTGCATAAGGACTGCCCGGGGCTGCGCGCCGGGAACCTCGCGGGGCTGGCGGGCGCCGCACCCCCTCCCTGGCCGCCTGCGCCCCGGGG AGGCCGCCCGCGCGCGACGGGACCGGCAGCATGAGCAGCGGCTACAGCAGCCTGGAGGAGGACGCCGAGGACTTCTTCTTCACCGCCAGG ACCTCCTTCTTCAGGAGAGCGCCCCAGGGCAAGCCCCGCTCCGGCCAACAAATGGGATTCTTCAAACGGGCGAAGCACCCCGAGGCCACC GTGCCCCAGTACCATGCGGTGAAGATTCCTCGGGAAGACCGACAGCAGTTCAAGGAGGAGAAGACGGGCACCATCCTGAGGAACAACTGG GGCAGCCCCCGGCGGGAGGGCCCGGATGCACACCCCATCCTGGCTGCTGACGGGCATCCCGAGCTGGGCCCCGATGGGCATCCAGGGCCA GGCACCGCCTAGGTTCCCATGTCCCAGCCTGGCCTGTGGCTGCCCTCCATCCCTTCCCCAGAGATGGCTCCTTGGGATGAAGAGGGTAGA GTGGGCTGCTGGTGTCGCATCAAGATTTGGCAGGATCGGCTTCCTCAGGGGCACAGACCTCTCCCACCCACAAGAACTCCTCCCACCCAA CTTCCCCTTAGAGTGCTGTGAGATGAGAGTGGGTAAATCAGGGACAGGGCCATGGGGTAGGGTGAGAAGGGCAGGGGTGTCCTGATGCAA AGGTGGGGAGAAGGGATCCTAATCCCTTCCTCTCCCATTCACCCTGTGTAACAGGACCCCAAGGACCTGCCTCCCCGGAAGTGCCTTAAC CTAGAGGGTCGGGGAGGAGGTTGTGTCACTGACTCAGGCTGCTCCTTCTCTAGTTTCCCCTCTCATCTGACCTTAGTTTGCTGCCATCAG >In-frame_RASSF3_ENST00000542104_chr12_65004523_+_ITGA7_ENST00000347027_chr12_56079072_-_948nt GCTGCATAAGGACTGCCCGGGGCTGCGCGCCGGGAACCTCGCGGGGCTGGCGGGCGCCGCACCCCCTCCCTGGCCGCCTGCGCCCCGGGG AGGCCGCCCGCGCGCGACGGGACCGGCAGCATGAGCAGCGGCTACAGCAGCCTGGAGGAGGACGCCGAGGACTTCTTCTTCACCGCCAGG ACCTCCTTCTTCAGGAGAGCGCCCCAGGGCAAGCCCCGCTCCGGCCAACAAATGGGATTCTTCAAACGGGCGAAGCACCCCGAGGCCACC GTGCCCCAGTACCATGCGGTGAAGATTCCTCGGGAAGACCGACAGCAGTTCAAGGAGGAGAAGACGGGCACCATCCTGAGGAACAACTGG GGCAGCCCCCGGCGGGAGGGCCCGGATGCACACCCCATCCTGGCTGCTGACGGGCATCCCGAGCTGGGCCCCGATGGGCATCCAGGGCCA GGCACCGCCTAGGTTCCCATGTCCCAGCCTGGCCTGTGGCTGCCCTCCATCCCTTCCCCAGAGATGGCTCCTTGGGATGAAGAGGGTAGA GTGGGCTGCTGGTGTCGCATCAAGATTTGGCAGGATCGGCTTCCTCAGGGGCACAGACCTCTCCCACCCACAAGAACTCCTCCCACCCAA CTTCCCCTTAGAGTGCTGTGAGATGAGAGTGGGTAAATCAGGGACAGGGCCATGGGGTAGGGTGAGAAGGGCAGGGGTGTCCTGATGCAA AGGTGGGGAGAAGGGATCCTAATCCCTTCCTCTCCCATTCACCCTGTGTAACAGGACCCCAAGGACCTGCCTCCCCGGAAGTGCCTTAAC CTAGAGGGTCGGGGAGGAGGTTGTGTCACTGACTCAGGCTGCTCCTTCTCTAGTTTCCCCTCTCATCTGACCTTAGTTTGCTGCCATCAG >In-frame_RASSF3_ENST00000542104_chr12_65004523_+_ITGA7_ENST00000452168_chr12_56079072_-_948nt GCTGCATAAGGACTGCCCGGGGCTGCGCGCCGGGAACCTCGCGGGGCTGGCGGGCGCCGCACCCCCTCCCTGGCCGCCTGCGCCCCGGGG AGGCCGCCCGCGCGCGACGGGACCGGCAGCATGAGCAGCGGCTACAGCAGCCTGGAGGAGGACGCCGAGGACTTCTTCTTCACCGCCAGG ACCTCCTTCTTCAGGAGAGCGCCCCAGGGCAAGCCCCGCTCCGGCCAACAAATGGGATTCTTCAAACGGGCGAAGCACCCCGAGGCCACC GTGCCCCAGTACCATGCGGTGAAGATTCCTCGGGAAGACCGACAGCAGTTCAAGGAGGAGAAGACGGGCACCATCCTGAGGAACAACTGG GGCAGCCCCCGGCGGGAGGGCCCGGATGCACACCCCATCCTGGCTGCTGACGGGCATCCCGAGCTGGGCCCCGATGGGCATCCAGGGCCA GGCACCGCCTAGGTTCCCATGTCCCAGCCTGGCCTGTGGCTGCCCTCCATCCCTTCCCCAGAGATGGCTCCTTGGGATGAAGAGGGTAGA GTGGGCTGCTGGTGTCGCATCAAGATTTGGCAGGATCGGCTTCCTCAGGGGCACAGACCTCTCCCACCCACAAGAACTCCTCCCACCCAA CTTCCCCTTAGAGTGCTGTGAGATGAGAGTGGGTAAATCAGGGACAGGGCCATGGGGTAGGGTGAGAAGGGCAGGGGTGTCCTGATGCAA AGGTGGGGAGAAGGGATCCTAATCCCTTCCTCTCCCATTCACCCTGTGTAACAGGACCCCAAGGACCTGCCTCCCCGGAAGTGCCTTAAC CTAGAGGGTCGGGGAGGAGGTTGTGTCACTGACTCAGGCTGCTCCTTCTCTAGTTTCCCCTCTCATCTGACCTTAGTTTGCTGCCATCAG |
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FusionGenePPI for RASSF3_ITGA7 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
RASSF3 | MDM2, APP, STK3, STK4, FBXW11, BTRC, MAP1S, CDC37, FGFR1OP2, MAP1B, MOB4, SIKE1, SLMAP, STRN, STRN3, STRN4, STRIP1, VAPA, VAPB, XPO1, LITAF | ITGA7 | FHL2, FHL3, CHRNA1, MYOC, ITGB1, TAZ, ATP1B3, SUSD4, LGALS8, TNFSF13B, ATP1B4, BTNL8, ART3, B3GNT2, PTCH1, TSPAN11, ST8SIA4, SLAMF1, PCDHGA5, DKKL1, DEFA1, PSG8, TMPRSS11B, CD1E, PCDH20, NCEH1, TMED6, IL17RC |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for RASSF3_ITGA7 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for RASSF3_ITGA7 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | ITGA7 | C0009375 | Colonic Neoplasms | 1 | CTD_human |