|
Fusion gene ID: 30563 |
FusionGeneSummary for RASSF3_ITGA7 |
Fusion gene summary |
Fusion gene information | Fusion gene name: RASSF3_ITGA7 | Fusion gene ID: 30563 | Hgene | Tgene | Gene symbol | RASSF3 | ITGA7 | Gene ID | 283349 | 3679 |
Gene name | Ras association domain family member 3 | integrin subunit alpha 7 | |
Synonyms | RASSF5 | - | |
Cytomap | 12q14.2 | 12q13.2 | |
Type of gene | protein-coding | protein-coding | |
Description | ras association domain-containing protein 3Ras association (RalGDS/AF-6) domain family 3Ras association (RalGDS/AF-6) domain family member 3 | integrin alpha-7integrin alpha 7 chain | |
Modification date | 20180519 | 20180522 | |
UniProtAcc | Q86WH2 | Q13683 | |
Ensembl transtripts involved in fusion gene | ENST00000336061, ENST00000542104, ENST00000540088, | ENST00000553804, ENST00000257879, ENST00000347027, ENST00000452168, ENST00000394229, ENST00000257880, ENST00000394230, ENST00000555728, | |
Fusion gene scores | * DoF score | 11 X 5 X 11=605 | 3 X 3 X 3=27 |
# samples | 13 | 3 | |
** MAII score | log2(13/605*10)=-2.2184235191335 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(3/27*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: RASSF3 [Title/Abstract] AND ITGA7 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation | Oncogene involved fusion gene, in-frame and retained their domain. Tumor suppressor gene involved fusion gene, in-frame but not retained their domain. Tumor suppressor gene involved fusion gene, retained protein feature but frameshift. DDR (DNA damage repair) gene involved fusion gene, in-frame but not retained their domain. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | SKCM | TCGA-GN-A26D-06A | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000336061 | ENST00000553804 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
Frame-shift | ENST00000336061 | ENST00000257879 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
In-frame | ENST00000336061 | ENST00000347027 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
In-frame | ENST00000336061 | ENST00000452168 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
Frame-shift | ENST00000336061 | ENST00000394229 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
Frame-shift | ENST00000336061 | ENST00000257880 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
Frame-shift | ENST00000336061 | ENST00000394230 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
Frame-shift | ENST00000336061 | ENST00000555728 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
In-frame | ENST00000542104 | ENST00000553804 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
Frame-shift | ENST00000542104 | ENST00000257879 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
In-frame | ENST00000542104 | ENST00000347027 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
In-frame | ENST00000542104 | ENST00000452168 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
Frame-shift | ENST00000542104 | ENST00000394229 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
Frame-shift | ENST00000542104 | ENST00000257880 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
Frame-shift | ENST00000542104 | ENST00000394230 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
Frame-shift | ENST00000542104 | ENST00000555728 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
3UTR-3CDS | ENST00000540088 | ENST00000553804 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
3UTR-3CDS | ENST00000540088 | ENST00000257879 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
3UTR-3CDS | ENST00000540088 | ENST00000347027 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
3UTR-3CDS | ENST00000540088 | ENST00000452168 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
3UTR-3CDS | ENST00000540088 | ENST00000394229 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
3UTR-3CDS | ENST00000540088 | ENST00000257880 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
3UTR-3CDS | ENST00000540088 | ENST00000394230 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
3UTR-3CDS | ENST00000540088 | ENST00000555728 | RASSF3 | chr12 | 65004523 | + | ITGA7 | chr12 | 56079072 | - |
Top |
FusionProtFeatures for RASSF3_ITGA7 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
RASSF3 | ITGA7 |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 1107_1111 | 1061 | 1138 | Motif | Note=GFFKR motif |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 1107_1111 | 968 | 1045 | Motif | Note=GFFKR motif |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 1107_1111 | 1065 | 1142 | Motif | Note=GFFKR motif |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 1107_1111 | 1105 | 1182 | Motif | Note=GFFKR motif |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 1157_1176 | 1061 | 1138 | Region | Note=3 X 4 AA repeats of D-X-H-P |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 1157_1176 | 1142 | 1163 | Region | Note=3 X 4 AA repeats of D-X-H-P |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 1157_1176 | 968 | 1045 | Region | Note=3 X 4 AA repeats of D-X-H-P |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 1157_1176 | 1065 | 1142 | Region | Note=3 X 4 AA repeats of D-X-H-P |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 1157_1176 | 1105 | 1182 | Region | Note=3 X 4 AA repeats of D-X-H-P |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 1157_1160 | 1061 | 1138 | Repeat | Note=1 |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 1165_1168 | 1061 | 1138 | Repeat | Note=2 |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 1173_1176 | 1061 | 1138 | Repeat | Note=3 |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 1157_1160 | 1142 | 1163 | Repeat | Note=1 |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 1165_1168 | 1142 | 1163 | Repeat | Note=2 |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 1173_1176 | 1142 | 1163 | Repeat | Note=3 |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 1157_1160 | 968 | 1045 | Repeat | Note=1 |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 1165_1168 | 968 | 1045 | Repeat | Note=2 |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 1173_1176 | 968 | 1045 | Repeat | Note=3 |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 1157_1160 | 1065 | 1142 | Repeat | Note=1 |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 1165_1168 | 1065 | 1142 | Repeat | Note=2 |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 1173_1176 | 1065 | 1142 | Repeat | Note=3 |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 1157_1160 | 1105 | 1182 | Repeat | Note=1 |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 1165_1168 | 1105 | 1182 | Repeat | Note=2 |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 1173_1176 | 1105 | 1182 | Repeat | Note=3 |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 1104_1181 | 1061 | 1138 | Topological domain | Cytoplasmic |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 1104_1181 | 968 | 1045 | Topological domain | Cytoplasmic |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 1104_1181 | 1065 | 1142 | Topological domain | Cytoplasmic |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 1104_1181 | 1105 | 1182 | Topological domain | Cytoplasmic |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 1083_1103 | 1061 | 1138 | Transmembrane | Helical |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 1083_1103 | 968 | 1045 | Transmembrane | Helical |
Tgene | >ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 1083_1103 | 1065 | 1142 | Transmembrane | Helical |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >RASSF3 | chr12:65004523 | chr12:56079072 | ENST00000336061 | + | 2 | 6 | 187_234 | 37 | 239 | Domain | SARAH |
Hgene | >RASSF3 | chr12:65004523 | chr12:56079072 | ENST00000336061 | + | 2 | 6 | 79_186 | 37 | 239 | Domain | Ras-associating |
Hgene | >RASSF3 | chr12:65004523 | chr12:56079072 | ENST00000542104 | + | 1 | 5 | 187_234 | 37 | 239 | Domain | SARAH |
Hgene | >RASSF3 | chr12:65004523 | chr12:56079072 | ENST00000542104 | + | 1 | 5 | 79_186 | 37 | 239 | Domain | Ras-associating |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 372_380 | 1061 | 1138 | Calcium binding | Ontology_term=ECO:0000255 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 434_442 | 1061 | 1138 | Calcium binding | Ontology_term=ECO:0000255 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 492_500 | 1061 | 1138 | Calcium binding | Ontology_term=ECO:0000255 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 372_380 | 1142 | 1163 | Calcium binding | Ontology_term=ECO:0000255 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 434_442 | 1142 | 1163 | Calcium binding | Ontology_term=ECO:0000255 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 492_500 | 1142 | 1163 | Calcium binding | Ontology_term=ECO:0000255 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 372_380 | 968 | 1045 | Calcium binding | Ontology_term=ECO:0000255 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 434_442 | 968 | 1045 | Calcium binding | Ontology_term=ECO:0000255 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 492_500 | 968 | 1045 | Calcium binding | Ontology_term=ECO:0000255 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 372_380 | 1065 | 1142 | Calcium binding | Ontology_term=ECO:0000255 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 434_442 | 1065 | 1142 | Calcium binding | Ontology_term=ECO:0000255 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 492_500 | 1065 | 1142 | Calcium binding | Ontology_term=ECO:0000255 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 372_380 | 1105 | 1182 | Calcium binding | Ontology_term=ECO:0000255 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 434_442 | 1105 | 1182 | Calcium binding | Ontology_term=ECO:0000255 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 492_500 | 1105 | 1182 | Calcium binding | Ontology_term=ECO:0000255 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 953_958 | 1061 | 1138 | Compositional bias | Note=Poly-Arg |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 953_958 | 1142 | 1163 | Compositional bias | Note=Poly-Arg |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 953_958 | 968 | 1045 | Compositional bias | Note=Poly-Arg |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 953_958 | 1065 | 1142 | Compositional bias | Note=Poly-Arg |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 953_958 | 1105 | 1182 | Compositional bias | Note=Poly-Arg |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 1107_1111 | 1142 | 1163 | Motif | Note=GFFKR motif |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 110_175 | 1061 | 1138 | Repeat | FG-GAP 2 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 185_238 | 1061 | 1138 | Repeat | FG-GAP 3 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 292_349 | 1061 | 1138 | Repeat | FG-GAP 4 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 350_411 | 1061 | 1138 | Repeat | FG-GAP 5 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 35_103 | 1061 | 1138 | Repeat | FG-GAP 1 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 412_467 | 1061 | 1138 | Repeat | FG-GAP 6 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 471_530 | 1061 | 1138 | Repeat | FG-GAP 7 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 110_175 | 1142 | 1163 | Repeat | FG-GAP 2 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 185_238 | 1142 | 1163 | Repeat | FG-GAP 3 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 292_349 | 1142 | 1163 | Repeat | FG-GAP 4 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 350_411 | 1142 | 1163 | Repeat | FG-GAP 5 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 35_103 | 1142 | 1163 | Repeat | FG-GAP 1 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 412_467 | 1142 | 1163 | Repeat | FG-GAP 6 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 471_530 | 1142 | 1163 | Repeat | FG-GAP 7 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 110_175 | 968 | 1045 | Repeat | FG-GAP 2 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 185_238 | 968 | 1045 | Repeat | FG-GAP 3 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 292_349 | 968 | 1045 | Repeat | FG-GAP 4 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 350_411 | 968 | 1045 | Repeat | FG-GAP 5 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 35_103 | 968 | 1045 | Repeat | FG-GAP 1 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 412_467 | 968 | 1045 | Repeat | FG-GAP 6 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 471_530 | 968 | 1045 | Repeat | FG-GAP 7 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 110_175 | 1065 | 1142 | Repeat | FG-GAP 2 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 185_238 | 1065 | 1142 | Repeat | FG-GAP 3 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 292_349 | 1065 | 1142 | Repeat | FG-GAP 4 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 350_411 | 1065 | 1142 | Repeat | FG-GAP 5 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 35_103 | 1065 | 1142 | Repeat | FG-GAP 1 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 412_467 | 1065 | 1142 | Repeat | FG-GAP 6 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 471_530 | 1065 | 1142 | Repeat | FG-GAP 7 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 110_175 | 1105 | 1182 | Repeat | FG-GAP 2 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 185_238 | 1105 | 1182 | Repeat | FG-GAP 3 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 292_349 | 1105 | 1182 | Repeat | FG-GAP 4 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 350_411 | 1105 | 1182 | Repeat | FG-GAP 5 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 35_103 | 1105 | 1182 | Repeat | FG-GAP 1 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 412_467 | 1105 | 1182 | Repeat | FG-GAP 6 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 471_530 | 1105 | 1182 | Repeat | FG-GAP 7 |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257879 | - | 23 | 25 | 34_1082 | 1061 | 1138 | Topological domain | Extracellular |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 1104_1181 | 1142 | 1163 | Topological domain | Cytoplasmic |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 34_1082 | 1142 | 1163 | Topological domain | Extracellular |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000452168 | - | 23 | 25 | 34_1082 | 968 | 1045 | Topological domain | Extracellular |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000553804 | - | 23 | 25 | 34_1082 | 1065 | 1142 | Topological domain | Extracellular |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 34_1082 | 1105 | 1182 | Topological domain | Extracellular |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000257880 | - | 25 | 27 | 1083_1103 | 1142 | 1163 | Transmembrane | Helical |
Tgene | ITGA7 | chr12:65004523 | chr12:56079072 | ENST00000555728 | - | 24 | 26 | 1083_1103 | 1105 | 1182 | Transmembrane | Helical |
Top |
FusionGeneSequence for RASSF3_ITGA7 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_RASSF3_ENST00000336061_chr12_65004523_+_ITGA7_ENST00000553804_chr12_56079072_-_114aa MSSGYSSLEEDAEDFFFTARTSFFRRAPQGKPRSGQQMGFFKRAKHPEATVPQYHAVKIPREDRQQFKEEKTGTILRNNWGSPRREGPDA >In-frame_RASSF3_ENST00000336061_chr12_65004523_+_ITGA7_ENST00000347027_chr12_56079072_-_114aa MSSGYSSLEEDAEDFFFTARTSFFRRAPQGKPRSGQQMGFFKRAKHPEATVPQYHAVKIPREDRQQFKEEKTGTILRNNWGSPRREGPDA >In-frame_RASSF3_ENST00000336061_chr12_65004523_+_ITGA7_ENST00000452168_chr12_56079072_-_114aa MSSGYSSLEEDAEDFFFTARTSFFRRAPQGKPRSGQQMGFFKRAKHPEATVPQYHAVKIPREDRQQFKEEKTGTILRNNWGSPRREGPDA >In-frame_RASSF3_ENST00000542104_chr12_65004523_+_ITGA7_ENST00000553804_chr12_56079072_-_114aa MSSGYSSLEEDAEDFFFTARTSFFRRAPQGKPRSGQQMGFFKRAKHPEATVPQYHAVKIPREDRQQFKEEKTGTILRNNWGSPRREGPDA >In-frame_RASSF3_ENST00000542104_chr12_65004523_+_ITGA7_ENST00000347027_chr12_56079072_-_114aa MSSGYSSLEEDAEDFFFTARTSFFRRAPQGKPRSGQQMGFFKRAKHPEATVPQYHAVKIPREDRQQFKEEKTGTILRNNWGSPRREGPDA >In-frame_RASSF3_ENST00000542104_chr12_65004523_+_ITGA7_ENST00000452168_chr12_56079072_-_114aa MSSGYSSLEEDAEDFFFTARTSFFRRAPQGKPRSGQQMGFFKRAKHPEATVPQYHAVKIPREDRQQFKEEKTGTILRNNWGSPRREGPDA |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_RASSF3_ENST00000336061_chr12_65004523_+_ITGA7_ENST00000553804_chr12_56079072_-_342nt ATGAGCAGCGGCTACAGCAGCCTGGAGGAGGACGCCGAGGACTTCTTCTTCACCGCCAGGACCTCCTTCTTCAGGAGAGCGCCCCAGGGC AAGCCCCGCTCCGGCCAACAAATGGGATTCTTCAAACGGGCGAAGCACCCCGAGGCCACCGTGCCCCAGTACCATGCGGTGAAGATTCCT CGGGAAGACCGACAGCAGTTCAAGGAGGAGAAGACGGGCACCATCCTGAGGAACAACTGGGGCAGCCCCCGGCGGGAGGGCCCGGATGCA >In-frame_RASSF3_ENST00000336061_chr12_65004523_+_ITGA7_ENST00000347027_chr12_56079072_-_342nt ATGAGCAGCGGCTACAGCAGCCTGGAGGAGGACGCCGAGGACTTCTTCTTCACCGCCAGGACCTCCTTCTTCAGGAGAGCGCCCCAGGGC AAGCCCCGCTCCGGCCAACAAATGGGATTCTTCAAACGGGCGAAGCACCCCGAGGCCACCGTGCCCCAGTACCATGCGGTGAAGATTCCT CGGGAAGACCGACAGCAGTTCAAGGAGGAGAAGACGGGCACCATCCTGAGGAACAACTGGGGCAGCCCCCGGCGGGAGGGCCCGGATGCA >In-frame_RASSF3_ENST00000336061_chr12_65004523_+_ITGA7_ENST00000452168_chr12_56079072_-_342nt ATGAGCAGCGGCTACAGCAGCCTGGAGGAGGACGCCGAGGACTTCTTCTTCACCGCCAGGACCTCCTTCTTCAGGAGAGCGCCCCAGGGC AAGCCCCGCTCCGGCCAACAAATGGGATTCTTCAAACGGGCGAAGCACCCCGAGGCCACCGTGCCCCAGTACCATGCGGTGAAGATTCCT CGGGAAGACCGACAGCAGTTCAAGGAGGAGAAGACGGGCACCATCCTGAGGAACAACTGGGGCAGCCCCCGGCGGGAGGGCCCGGATGCA >In-frame_RASSF3_ENST00000542104_chr12_65004523_+_ITGA7_ENST00000553804_chr12_56079072_-_342nt ATGAGCAGCGGCTACAGCAGCCTGGAGGAGGACGCCGAGGACTTCTTCTTCACCGCCAGGACCTCCTTCTTCAGGAGAGCGCCCCAGGGC AAGCCCCGCTCCGGCCAACAAATGGGATTCTTCAAACGGGCGAAGCACCCCGAGGCCACCGTGCCCCAGTACCATGCGGTGAAGATTCCT CGGGAAGACCGACAGCAGTTCAAGGAGGAGAAGACGGGCACCATCCTGAGGAACAACTGGGGCAGCCCCCGGCGGGAGGGCCCGGATGCA >In-frame_RASSF3_ENST00000542104_chr12_65004523_+_ITGA7_ENST00000347027_chr12_56079072_-_342nt ATGAGCAGCGGCTACAGCAGCCTGGAGGAGGACGCCGAGGACTTCTTCTTCACCGCCAGGACCTCCTTCTTCAGGAGAGCGCCCCAGGGC AAGCCCCGCTCCGGCCAACAAATGGGATTCTTCAAACGGGCGAAGCACCCCGAGGCCACCGTGCCCCAGTACCATGCGGTGAAGATTCCT CGGGAAGACCGACAGCAGTTCAAGGAGGAGAAGACGGGCACCATCCTGAGGAACAACTGGGGCAGCCCCCGGCGGGAGGGCCCGGATGCA >In-frame_RASSF3_ENST00000542104_chr12_65004523_+_ITGA7_ENST00000452168_chr12_56079072_-_342nt ATGAGCAGCGGCTACAGCAGCCTGGAGGAGGACGCCGAGGACTTCTTCTTCACCGCCAGGACCTCCTTCTTCAGGAGAGCGCCCCAGGGC AAGCCCCGCTCCGGCCAACAAATGGGATTCTTCAAACGGGCGAAGCACCCCGAGGCCACCGTGCCCCAGTACCATGCGGTGAAGATTCCT CGGGAAGACCGACAGCAGTTCAAGGAGGAGAAGACGGGCACCATCCTGAGGAACAACTGGGGCAGCCCCCGGCGGGAGGGCCCGGATGCA |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_RASSF3_ENST00000336061_chr12_65004523_+_ITGA7_ENST00000553804_chr12_56079072_-_875nt GCTGCATAAGGACTGCCCGGGGCTGCGCGACGGGACCGGCAGCATGAGCAGCGGCTACAGCAGCCTGGAGGAGGACGCCGAGGACTTCTT CTTCACCGCCAGGACCTCCTTCTTCAGGAGAGCGCCCCAGGGCAAGCCCCGCTCCGGCCAACAAATGGGATTCTTCAAACGGGCGAAGCA CCCCGAGGCCACCGTGCCCCAGTACCATGCGGTGAAGATTCCTCGGGAAGACCGACAGCAGTTCAAGGAGGAGAAGACGGGCACCATCCT GAGGAACAACTGGGGCAGCCCCCGGCGGGAGGGCCCGGATGCACACCCCATCCTGGCTGCTGACGGGCATCCCGAGCTGGGCCCCGATGG GCATCCAGGGCCAGGCACCGCCTAGGTTCCCATGTCCCAGCCTGGCCTGTGGCTGCCCTCCATCCCTTCCCCAGAGATGGCTCCTTGGGA TGAAGAGGGTAGAGTGGGCTGCTGGTGTCGCATCAAGATTTGGCAGGATCGGCTTCCTCAGGGGCACAGACCTCTCCCACCCACAAGAAC TCCTCCCACCCAACTTCCCCTTAGAGTGCTGTGAGATGAGAGTGGGTAAATCAGGGACAGGGCCATGGGGTAGGGTGAGAAGGGCAGGGG TGTCCTGATGCAAAGGTGGGGAGAAGGGATCCTAATCCCTTCCTCTCCCATTCACCCTGTGTAACAGGACCCCAAGGACCTGCCTCCCCG GAAGTGCCTTAACCTAGAGGGTCGGGGAGGAGGTTGTGTCACTGACTCAGGCTGCTCCTTCTCTAGTTTCCCCTCTCATCTGACCTTAGT >In-frame_RASSF3_ENST00000336061_chr12_65004523_+_ITGA7_ENST00000347027_chr12_56079072_-_871nt GCTGCATAAGGACTGCCCGGGGCTGCGCGACGGGACCGGCAGCATGAGCAGCGGCTACAGCAGCCTGGAGGAGGACGCCGAGGACTTCTT CTTCACCGCCAGGACCTCCTTCTTCAGGAGAGCGCCCCAGGGCAAGCCCCGCTCCGGCCAACAAATGGGATTCTTCAAACGGGCGAAGCA CCCCGAGGCCACCGTGCCCCAGTACCATGCGGTGAAGATTCCTCGGGAAGACCGACAGCAGTTCAAGGAGGAGAAGACGGGCACCATCCT GAGGAACAACTGGGGCAGCCCCCGGCGGGAGGGCCCGGATGCACACCCCATCCTGGCTGCTGACGGGCATCCCGAGCTGGGCCCCGATGG GCATCCAGGGCCAGGCACCGCCTAGGTTCCCATGTCCCAGCCTGGCCTGTGGCTGCCCTCCATCCCTTCCCCAGAGATGGCTCCTTGGGA TGAAGAGGGTAGAGTGGGCTGCTGGTGTCGCATCAAGATTTGGCAGGATCGGCTTCCTCAGGGGCACAGACCTCTCCCACCCACAAGAAC TCCTCCCACCCAACTTCCCCTTAGAGTGCTGTGAGATGAGAGTGGGTAAATCAGGGACAGGGCCATGGGGTAGGGTGAGAAGGGCAGGGG TGTCCTGATGCAAAGGTGGGGAGAAGGGATCCTAATCCCTTCCTCTCCCATTCACCCTGTGTAACAGGACCCCAAGGACCTGCCTCCCCG GAAGTGCCTTAACCTAGAGGGTCGGGGAGGAGGTTGTGTCACTGACTCAGGCTGCTCCTTCTCTAGTTTCCCCTCTCATCTGACCTTAGT >In-frame_RASSF3_ENST00000336061_chr12_65004523_+_ITGA7_ENST00000452168_chr12_56079072_-_871nt GCTGCATAAGGACTGCCCGGGGCTGCGCGACGGGACCGGCAGCATGAGCAGCGGCTACAGCAGCCTGGAGGAGGACGCCGAGGACTTCTT CTTCACCGCCAGGACCTCCTTCTTCAGGAGAGCGCCCCAGGGCAAGCCCCGCTCCGGCCAACAAATGGGATTCTTCAAACGGGCGAAGCA CCCCGAGGCCACCGTGCCCCAGTACCATGCGGTGAAGATTCCTCGGGAAGACCGACAGCAGTTCAAGGAGGAGAAGACGGGCACCATCCT GAGGAACAACTGGGGCAGCCCCCGGCGGGAGGGCCCGGATGCACACCCCATCCTGGCTGCTGACGGGCATCCCGAGCTGGGCCCCGATGG GCATCCAGGGCCAGGCACCGCCTAGGTTCCCATGTCCCAGCCTGGCCTGTGGCTGCCCTCCATCCCTTCCCCAGAGATGGCTCCTTGGGA TGAAGAGGGTAGAGTGGGCTGCTGGTGTCGCATCAAGATTTGGCAGGATCGGCTTCCTCAGGGGCACAGACCTCTCCCACCCACAAGAAC TCCTCCCACCCAACTTCCCCTTAGAGTGCTGTGAGATGAGAGTGGGTAAATCAGGGACAGGGCCATGGGGTAGGGTGAGAAGGGCAGGGG TGTCCTGATGCAAAGGTGGGGAGAAGGGATCCTAATCCCTTCCTCTCCCATTCACCCTGTGTAACAGGACCCCAAGGACCTGCCTCCCCG GAAGTGCCTTAACCTAGAGGGTCGGGGAGGAGGTTGTGTCACTGACTCAGGCTGCTCCTTCTCTAGTTTCCCCTCTCATCTGACCTTAGT >In-frame_RASSF3_ENST00000542104_chr12_65004523_+_ITGA7_ENST00000553804_chr12_56079072_-_952nt GCTGCATAAGGACTGCCCGGGGCTGCGCGCCGGGAACCTCGCGGGGCTGGCGGGCGCCGCACCCCCTCCCTGGCCGCCTGCGCCCCGGGG AGGCCGCCCGCGCGCGACGGGACCGGCAGCATGAGCAGCGGCTACAGCAGCCTGGAGGAGGACGCCGAGGACTTCTTCTTCACCGCCAGG ACCTCCTTCTTCAGGAGAGCGCCCCAGGGCAAGCCCCGCTCCGGCCAACAAATGGGATTCTTCAAACGGGCGAAGCACCCCGAGGCCACC GTGCCCCAGTACCATGCGGTGAAGATTCCTCGGGAAGACCGACAGCAGTTCAAGGAGGAGAAGACGGGCACCATCCTGAGGAACAACTGG GGCAGCCCCCGGCGGGAGGGCCCGGATGCACACCCCATCCTGGCTGCTGACGGGCATCCCGAGCTGGGCCCCGATGGGCATCCAGGGCCA GGCACCGCCTAGGTTCCCATGTCCCAGCCTGGCCTGTGGCTGCCCTCCATCCCTTCCCCAGAGATGGCTCCTTGGGATGAAGAGGGTAGA GTGGGCTGCTGGTGTCGCATCAAGATTTGGCAGGATCGGCTTCCTCAGGGGCACAGACCTCTCCCACCCACAAGAACTCCTCCCACCCAA CTTCCCCTTAGAGTGCTGTGAGATGAGAGTGGGTAAATCAGGGACAGGGCCATGGGGTAGGGTGAGAAGGGCAGGGGTGTCCTGATGCAA AGGTGGGGAGAAGGGATCCTAATCCCTTCCTCTCCCATTCACCCTGTGTAACAGGACCCCAAGGACCTGCCTCCCCGGAAGTGCCTTAAC CTAGAGGGTCGGGGAGGAGGTTGTGTCACTGACTCAGGCTGCTCCTTCTCTAGTTTCCCCTCTCATCTGACCTTAGTTTGCTGCCATCAG >In-frame_RASSF3_ENST00000542104_chr12_65004523_+_ITGA7_ENST00000347027_chr12_56079072_-_948nt GCTGCATAAGGACTGCCCGGGGCTGCGCGCCGGGAACCTCGCGGGGCTGGCGGGCGCCGCACCCCCTCCCTGGCCGCCTGCGCCCCGGGG AGGCCGCCCGCGCGCGACGGGACCGGCAGCATGAGCAGCGGCTACAGCAGCCTGGAGGAGGACGCCGAGGACTTCTTCTTCACCGCCAGG ACCTCCTTCTTCAGGAGAGCGCCCCAGGGCAAGCCCCGCTCCGGCCAACAAATGGGATTCTTCAAACGGGCGAAGCACCCCGAGGCCACC GTGCCCCAGTACCATGCGGTGAAGATTCCTCGGGAAGACCGACAGCAGTTCAAGGAGGAGAAGACGGGCACCATCCTGAGGAACAACTGG GGCAGCCCCCGGCGGGAGGGCCCGGATGCACACCCCATCCTGGCTGCTGACGGGCATCCCGAGCTGGGCCCCGATGGGCATCCAGGGCCA GGCACCGCCTAGGTTCCCATGTCCCAGCCTGGCCTGTGGCTGCCCTCCATCCCTTCCCCAGAGATGGCTCCTTGGGATGAAGAGGGTAGA GTGGGCTGCTGGTGTCGCATCAAGATTTGGCAGGATCGGCTTCCTCAGGGGCACAGACCTCTCCCACCCACAAGAACTCCTCCCACCCAA CTTCCCCTTAGAGTGCTGTGAGATGAGAGTGGGTAAATCAGGGACAGGGCCATGGGGTAGGGTGAGAAGGGCAGGGGTGTCCTGATGCAA AGGTGGGGAGAAGGGATCCTAATCCCTTCCTCTCCCATTCACCCTGTGTAACAGGACCCCAAGGACCTGCCTCCCCGGAAGTGCCTTAAC CTAGAGGGTCGGGGAGGAGGTTGTGTCACTGACTCAGGCTGCTCCTTCTCTAGTTTCCCCTCTCATCTGACCTTAGTTTGCTGCCATCAG >In-frame_RASSF3_ENST00000542104_chr12_65004523_+_ITGA7_ENST00000452168_chr12_56079072_-_948nt GCTGCATAAGGACTGCCCGGGGCTGCGCGCCGGGAACCTCGCGGGGCTGGCGGGCGCCGCACCCCCTCCCTGGCCGCCTGCGCCCCGGGG AGGCCGCCCGCGCGCGACGGGACCGGCAGCATGAGCAGCGGCTACAGCAGCCTGGAGGAGGACGCCGAGGACTTCTTCTTCACCGCCAGG ACCTCCTTCTTCAGGAGAGCGCCCCAGGGCAAGCCCCGCTCCGGCCAACAAATGGGATTCTTCAAACGGGCGAAGCACCCCGAGGCCACC GTGCCCCAGTACCATGCGGTGAAGATTCCTCGGGAAGACCGACAGCAGTTCAAGGAGGAGAAGACGGGCACCATCCTGAGGAACAACTGG GGCAGCCCCCGGCGGGAGGGCCCGGATGCACACCCCATCCTGGCTGCTGACGGGCATCCCGAGCTGGGCCCCGATGGGCATCCAGGGCCA GGCACCGCCTAGGTTCCCATGTCCCAGCCTGGCCTGTGGCTGCCCTCCATCCCTTCCCCAGAGATGGCTCCTTGGGATGAAGAGGGTAGA GTGGGCTGCTGGTGTCGCATCAAGATTTGGCAGGATCGGCTTCCTCAGGGGCACAGACCTCTCCCACCCACAAGAACTCCTCCCACCCAA CTTCCCCTTAGAGTGCTGTGAGATGAGAGTGGGTAAATCAGGGACAGGGCCATGGGGTAGGGTGAGAAGGGCAGGGGTGTCCTGATGCAA AGGTGGGGAGAAGGGATCCTAATCCCTTCCTCTCCCATTCACCCTGTGTAACAGGACCCCAAGGACCTGCCTCCCCGGAAGTGCCTTAAC CTAGAGGGTCGGGGAGGAGGTTGTGTCACTGACTCAGGCTGCTCCTTCTCTAGTTTCCCCTCTCATCTGACCTTAGTTTGCTGCCATCAG |
Top |
FusionGenePPI for RASSF3_ITGA7 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
RASSF3 | MDM2, APP, STK3, STK4, FBXW11, BTRC, MAP1S, CDC37, FGFR1OP2, MAP1B, MOB4, SIKE1, SLMAP, STRN, STRN3, STRN4, STRIP1, VAPA, VAPB, XPO1, LITAF | ITGA7 | FHL2, FHL3, CHRNA1, MYOC, ITGB1, TAZ, ATP1B3, SUSD4, LGALS8, TNFSF13B, ATP1B4, BTNL8, ART3, B3GNT2, PTCH1, TSPAN11, ST8SIA4, SLAMF1, PCDHGA5, DKKL1, DEFA1, PSG8, TMPRSS11B, CD1E, PCDH20, NCEH1, TMED6, IL17RC |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for RASSF3_ITGA7 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for RASSF3_ITGA7 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | ITGA7 | C0009375 | Colonic Neoplasms | 1 | CTD_human |