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Fusion gene ID: 30445 |
FusionGeneSummary for RAPGEF5_SDK2 |
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Fusion gene information | Fusion gene name: RAPGEF5_SDK2 | Fusion gene ID: 30445 | Hgene | Tgene | Gene symbol | RAPGEF5 | SDK2 | Gene ID | 9771 | 54549 |
Gene name | Rap guanine nucleotide exchange factor 5 | sidekick cell adhesion molecule 2 | |
Synonyms | GFR|MR-GEF|REPAC | - | |
Cytomap | 7p15.3 | 17q25.1 | |
Type of gene | protein-coding | protein-coding | |
Description | rap guanine nucleotide exchange factor 5M-Ras-regulated GEFM-Ras-regulated Rap GEFRap guanine nucleotide exchange factor (GEF) 5guanine nucleotide exchange factor for Rap1related to Epac | protein sidekick-2sidekick homolog 2 | |
Modification date | 20180519 | 20180519 | |
UniProtAcc | Q92565 | Q58EX2 | |
Ensembl transtripts involved in fusion gene | ENST00000344041, ENST00000475788, ENST00000405243, ENST00000401957, | ENST00000392650, ENST00000388726, ENST00000410094, | |
Fusion gene scores | * DoF score | 11 X 11 X 6=726 | 6 X 9 X 5=270 |
# samples | 11 | 11 | |
** MAII score | log2(11/726*10)=-2.72246602447109 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(11/270*10)=-1.29545588352617 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: RAPGEF5 [Title/Abstract] AND SDK2 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | CV346479 | RAPGEF5 | chr7 | 22358146 | + | SDK2 | chr17 | 71491908 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-intron | ENST00000344041 | ENST00000392650 | RAPGEF5 | chr7 | 22358146 | + | SDK2 | chr17 | 71491908 | + |
intron-intron | ENST00000344041 | ENST00000388726 | RAPGEF5 | chr7 | 22358146 | + | SDK2 | chr17 | 71491908 | + |
intron-intron | ENST00000344041 | ENST00000410094 | RAPGEF5 | chr7 | 22358146 | + | SDK2 | chr17 | 71491908 | + |
intron-intron | ENST00000475788 | ENST00000392650 | RAPGEF5 | chr7 | 22358146 | + | SDK2 | chr17 | 71491908 | + |
intron-intron | ENST00000475788 | ENST00000388726 | RAPGEF5 | chr7 | 22358146 | + | SDK2 | chr17 | 71491908 | + |
intron-intron | ENST00000475788 | ENST00000410094 | RAPGEF5 | chr7 | 22358146 | + | SDK2 | chr17 | 71491908 | + |
intron-intron | ENST00000405243 | ENST00000392650 | RAPGEF5 | chr7 | 22358146 | + | SDK2 | chr17 | 71491908 | + |
intron-intron | ENST00000405243 | ENST00000388726 | RAPGEF5 | chr7 | 22358146 | + | SDK2 | chr17 | 71491908 | + |
intron-intron | ENST00000405243 | ENST00000410094 | RAPGEF5 | chr7 | 22358146 | + | SDK2 | chr17 | 71491908 | + |
intron-intron | ENST00000401957 | ENST00000392650 | RAPGEF5 | chr7 | 22358146 | + | SDK2 | chr17 | 71491908 | + |
intron-intron | ENST00000401957 | ENST00000388726 | RAPGEF5 | chr7 | 22358146 | + | SDK2 | chr17 | 71491908 | + |
intron-intron | ENST00000401957 | ENST00000410094 | RAPGEF5 | chr7 | 22358146 | + | SDK2 | chr17 | 71491908 | + |
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FusionProtFeatures for RAPGEF5_SDK2 |
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Hgene | Tgene |
RAPGEF5 | SDK2 |
Guanine nucleotide exchange factor (GEF) for RAP1A,RAP2A and MRAS/M-Ras-GTP. Its association with MRAS inhibits Rap1activation. {ECO:0000269|PubMed:10777494,ECO:0000269|PubMed:10934204}. | Adhesion molecule that promotes lamina-specific synapticconnections in the retina and is specifically required for theformation of neuronal circuits that detect motion. Acts bypromoting formation of synapses between two specific retinal celltypes: the retinal ganglion cells W3B-RGCs and the excitatoryamacrine cells VG3-ACs. Formation of synapses between these twocells plays a key role in detection of motion. Promotes synapticconnectivity via homophilic interactions.{ECO:0000250|UniProtKB:Q6V4S5}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for RAPGEF5_SDK2 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for RAPGEF5_SDK2 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for RAPGEF5_SDK2 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for RAPGEF5_SDK2 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | RAPGEF5 | C0005586 | Bipolar Disorder | 1 | PSYGENET |
Hgene | RAPGEF5 | C0033975 | Psychotic Disorders | 1 | PSYGENET |
Hgene | RAPGEF5 | C0036341 | Schizophrenia | 1 | PSYGENET |
Hgene | RAPGEF5 | C0041696 | Unipolar Depression | 1 | PSYGENET |
Hgene | RAPGEF5 | C0236733 | Amphetamine-Related Disorders | 1 | CTD_human |
Hgene | RAPGEF5 | C0349204 | Nonorganic psychosis | 1 | PSYGENET |
Hgene | RAPGEF5 | C1269683 | Major Depressive Disorder | 1 | PSYGENET |