![]() |
||||||
|
![]() | |
![]() | |
![]() | |
![]() | |
![]() | |
![]() |
Fusion gene ID: 30389 |
FusionGeneSummary for RAP1B_TUBGCP3 |
![]() |
Fusion gene information | Fusion gene name: RAP1B_TUBGCP3 | Fusion gene ID: 30389 | Hgene | Tgene | Gene symbol | RAP1B | TUBGCP3 | Gene ID | 5908 | 10426 |
Gene name | RAP1B, member of RAS oncogene family | tubulin gamma complex associated protein 3 | |
Synonyms | K-REV|RAL1B | 104p|ALP6|GCP3|Grip104|SPBC98|Spc98|Spc98p | |
Cytomap | 12q15 | 13q34 | |
Type of gene | protein-coding | protein-coding | |
Description | ras-related protein Rap-1bGTP-binding protein smg p21BRAS-related protein RAP1BRas family small GTP binding protein RAP1Bsmall GTP binding protein | gamma-tubulin complex component 3gamma-ring complex protein 104 kDaspindle pole body protein Spc98 homolog | |
Modification date | 20180527 | 20180523 | |
UniProtAcc | P61224 | Q96CW5 | |
Ensembl transtripts involved in fusion gene | ENST00000250559, ENST00000393436, ENST00000341355, ENST00000537460, ENST00000463493, ENST00000450214, ENST00000543393, ENST00000378985, ENST00000540209, ENST00000539091, ENST00000542145, ENST00000543697, ENST00000541216, | ENST00000261965, ENST00000375669, ENST00000462580, | |
Fusion gene scores | * DoF score | 12 X 6 X 7=504 | 4 X 4 X 2=32 |
# samples | 11 | 5 | |
** MAII score | log2(11/504*10)=-2.19592020997526 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(5/32*10)=0.643856189774725 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: RAP1B [Title/Abstract] AND TUBGCP3 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
![]() |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | RAP1B | GO:0071320 | cellular response to cAMP | 21840392 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | BF327763 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-intron | ENST00000250559 | ENST00000261965 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000250559 | ENST00000375669 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000250559 | ENST00000462580 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000393436 | ENST00000261965 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000393436 | ENST00000375669 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000393436 | ENST00000462580 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000341355 | ENST00000261965 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000341355 | ENST00000375669 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000341355 | ENST00000462580 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000537460 | ENST00000261965 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000537460 | ENST00000375669 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000537460 | ENST00000462580 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000463493 | ENST00000261965 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000463493 | ENST00000375669 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000463493 | ENST00000462580 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000450214 | ENST00000261965 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000450214 | ENST00000375669 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000450214 | ENST00000462580 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000543393 | ENST00000261965 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000543393 | ENST00000375669 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000543393 | ENST00000462580 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000378985 | ENST00000261965 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000378985 | ENST00000375669 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000378985 | ENST00000462580 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000540209 | ENST00000261965 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000540209 | ENST00000375669 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000540209 | ENST00000462580 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000539091 | ENST00000261965 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000539091 | ENST00000375669 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000539091 | ENST00000462580 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000542145 | ENST00000261965 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000542145 | ENST00000375669 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000542145 | ENST00000462580 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000543697 | ENST00000261965 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000543697 | ENST00000375669 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000543697 | ENST00000462580 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000541216 | ENST00000261965 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000541216 | ENST00000375669 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
intron-intron | ENST00000541216 | ENST00000462580 | RAP1B | chr12 | 69032201 | + | TUBGCP3 | chr13 | 113193332 | + |
Top |
FusionProtFeatures for RAP1B_TUBGCP3 |
![]() |
Hgene | Tgene |
RAP1B | TUBGCP3 |
Gamma-tubulin complex is necessary for microtubulenucleation at the centrosome. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Top |
FusionGeneSequence for RAP1B_TUBGCP3 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
Top |
FusionGenePPI for RAP1B_TUBGCP3 |
![]() |
![]() |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for RAP1B_TUBGCP3 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for RAP1B_TUBGCP3 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |