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Fusion gene ID: 30139 |
FusionGeneSummary for RAC1_PROKR1 |
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Fusion gene information | Fusion gene name: RAC1_PROKR1 | Fusion gene ID: 30139 | Hgene | Tgene | Gene symbol | RAC1 | PROKR1 | Gene ID | 6035 | 10887 |
Gene name | ribonuclease A family member 1, pancreatic | prokineticin receptor 1 | |
Synonyms | RAC1|RIB1|RNS1 | GPR73|GPR73a|PK-R1|PKR1|ZAQ | |
Cytomap | 14q11.2 | 2p13.3 | |
Type of gene | protein-coding | protein-coding | |
Description | ribonuclease pancreaticHP-RNaseRIB-1RNase 1RNase ARNase upI-1ribonuclease 1ribonuclease A C1ribonuclease, RNase A family, 1 (pancreatic) | prokineticin receptor 1G protein-coupled receptor 73G protein-coupled receptor ZAQ | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | P63000 | Q8TCW9 | |
Ensembl transtripts involved in fusion gene | ENST00000348035, ENST00000356142, ENST00000488373, | ENST00000303786, ENST00000394342, | |
Fusion gene scores | * DoF score | 6 X 6 X 1=36 | 1 X 1 X 1=1 |
# samples | 6 | 1 | |
** MAII score | log2(6/36*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(1/1*10)=3.32192809488736 | |
Context | PubMed: RAC1 [Title/Abstract] AND PROKR1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | RAC1 | GO:0051607 | defense response to virus | 9826755 |
Hgene | RAC1 | GO:0090501 | RNA phosphodiester bond hydrolysis | 9826755 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | BF924694 | RAC1 | chr7 | 6443169 | - | PROKR1 | chr2 | 68859774 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
3UTR-intron | ENST00000348035 | ENST00000303786 | RAC1 | chr7 | 6443169 | - | PROKR1 | chr2 | 68859774 | - |
3UTR-intron | ENST00000348035 | ENST00000394342 | RAC1 | chr7 | 6443169 | - | PROKR1 | chr2 | 68859774 | - |
intron-intron | ENST00000356142 | ENST00000303786 | RAC1 | chr7 | 6443169 | - | PROKR1 | chr2 | 68859774 | - |
intron-intron | ENST00000356142 | ENST00000394342 | RAC1 | chr7 | 6443169 | - | PROKR1 | chr2 | 68859774 | - |
intron-intron | ENST00000488373 | ENST00000303786 | RAC1 | chr7 | 6443169 | - | PROKR1 | chr2 | 68859774 | - |
intron-intron | ENST00000488373 | ENST00000394342 | RAC1 | chr7 | 6443169 | - | PROKR1 | chr2 | 68859774 | - |
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FusionProtFeatures for RAC1_PROKR1 |
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Hgene | Tgene |
RAC1 | PROKR1 |
Plasma membrane-associated small GTPase which cyclesbetween active GTP-bound and inactive GDP-bound states. In itsactive state, binds to a variety of effector proteins to regulatecellular responses such as secretory processes, phagocytosis ofapoptotic cells, epithelial cell polarization, neurons adhesion,migration and differentiation, and growth-factor induced formationof membrane ruffles. Rac1 p21/rho GDI heterodimer is the activecomponent of the cytosolic factor sigma 1, which is involved instimulation of the NADPH oxidase activity in macrophages.Essential for the SPATA13-mediated regulation of cell migrationand adhesion assembly and disassembly. Stimulates PKN2 kinaseactivity. In concert with RAB7A, plays a role in regulating theformation of RBs (ruffled borders) in osteoclasts. In podocytes,promotes nuclear shuttling of NR3C2; this modulation is requiredfor a proper kidney functioning. Required for atypical chemokinereceptor ACKR2-induced LIMK1-PAK1-dependent phosphorylation ofcofilin (CFL1) and for up-regulation of ACKR2 from endosomalcompartment to cell membrane, increasing its efficiency inchemokine uptake and degradation. In synapses, seems to mediatethe regulation of F-actin cluster formation performed by SHANK3.{ECO:0000250|UniProtKB:P63001, ECO:0000269|PubMed:1643658,ECO:0000269|PubMed:28886345, ECO:0000269|PubMed:9121475}. Isoform B has an accelerated GEF-independent GDP/GTPexchange and an impaired GTP hydrolysis, which is restoredpartially by GTPase-activating proteins. It is able to bind to theGTPase-binding domain of PAK but not full-length PAK in a GTP-dependent manner, suggesting that the insertion does notcompletely abolish effector interaction. | Receptor for prokineticin 1. Exclusively coupled to theG(q) subclass of heteromeric G proteins. Activation leads tomobilization of calcium, stimulation of phosphoinositide turnoverand activation of p44/p42 mitogen-activated protein kinase. Mayplay a role during early pregnancy. {ECO:0000269|PubMed:18339712}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for RAC1_PROKR1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for RAC1_PROKR1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for RAC1_PROKR1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Hgene | RAC1 | P63000 | DB00993 | Azathioprine | Ras-related C3 botulinum toxin substrate 1 | small molecule | approved |
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RelatedDiseases for RAC1_PROKR1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | RAC1 | C0011570 | Mental Depression | 2 | PSYGENET |
Hgene | RAC1 | C0011581 | Depressive disorder | 2 | PSYGENET |
Hgene | RAC1 | C0007193 | Cardiomyopathy, Dilated | 1 | CTD_human |
Hgene | RAC1 | C0007621 | Neoplastic Cell Transformation | 1 | CTD_human |
Hgene | RAC1 | C0011849 | Diabetes Mellitus | 1 | CTD_human |
Hgene | RAC1 | C0018801 | Heart failure | 1 | CTD_human |
Hgene | RAC1 | C0023895 | Liver diseases | 1 | CTD_human |
Hgene | RAC1 | C0025202 | melanoma | 1 | CTD_human |
Hgene | RAC1 | C0027627 | Neoplasm Metastasis | 1 | CTD_human |
Hgene | RAC1 | C2239176 | Liver carcinoma | 1 | CTD_human |
Tgene | PROKR1 | C0020429 | Hyperalgesia | 1 | CTD_human |
Tgene | PROKR1 | C0030193 | Pain | 1 | CTD_human |