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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 30133

FusionGeneSummary for RABIF_MKNK1

check button Fusion gene summary
Fusion gene informationFusion gene name: RABIF_MKNK1
Fusion gene ID: 30133
HgeneTgene
Gene symbol

RABIF

MKNK1

Gene ID

5877

8569

Gene nameRAB interacting factorMAP kinase interacting serine/threonine kinase 1
SynonymsMSS4|RASGFR3|RASGRF3MNK1
Cytomap

1q32.1

1p33

Type of geneprotein-codingprotein-coding
Descriptionguanine nucleotide exchange factor MSS4Ras-specific guanine-releasing factor 3mammalian suppressor of SEC4rab-interacting factorMAP kinase-interacting serine/threonine-protein kinase 1MAP kinase signal-integrating kinase 1MAPK signal-integrating kinase 1
Modification date2018052320180523
UniProtAcc

P47224

Q9BUB5

Ensembl transtripts involved in fusion geneENST00000367262, ENST00000371946, 
ENST00000371945, ENST00000341183, 
ENST00000428112, ENST00000545730, 
ENST00000465783, ENST00000525888, 
ENST00000371944, 
Fusion gene scores* DoF score1 X 1 X 1=11 X 1 X 1=1
# samples 11
** MAII scorelog2(1/1*10)=3.32192809488736log2(1/1*10)=3.32192809488736
Context

PubMed: RABIF [Title/Abstract] AND MKNK1 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneMKNK1

GO:0006468

protein phosphorylation

9155018

TgeneMKNK1

GO:0018105

peptidyl-serine phosphorylation

17130135

TgeneMKNK1

GO:0035556

intracellular signal transduction

9155018


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGALDSARCTCGA-DX-AB2O-01ARABIFchr1

202858101

-MKNK1chr1

47059952

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-5UTRENST00000367262ENST00000371946RABIFchr1

202858101

-MKNK1chr1

47059952

-
5CDS-5UTRENST00000367262ENST00000371945RABIFchr1

202858101

-MKNK1chr1

47059952

-
5CDS-5UTRENST00000367262ENST00000341183RABIFchr1

202858101

-MKNK1chr1

47059952

-
5CDS-5UTRENST00000367262ENST00000428112RABIFchr1

202858101

-MKNK1chr1

47059952

-
5CDS-5UTRENST00000367262ENST00000545730RABIFchr1

202858101

-MKNK1chr1

47059952

-
5CDS-5UTRENST00000367262ENST00000465783RABIFchr1

202858101

-MKNK1chr1

47059952

-
5CDS-5UTRENST00000367262ENST00000525888RABIFchr1

202858101

-MKNK1chr1

47059952

-
5CDS-intronENST00000367262ENST00000371944RABIFchr1

202858101

-MKNK1chr1

47059952

-

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FusionProtFeatures for RABIF_MKNK1


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
RABIF

P47224

MKNK1

Q9BUB5

Guanine-nucleotide-releasing protein that acts onmembers of the SEC4/YPT1/RAB subfamily. Stimulates GDP releasefrom both YPT1 and RAB3A, but is less active on these proteinsthan on the SEC4 protein. Might play a general role in vesiculartransport. May play a role in the response to environmental stressand cytokines. Appears to regulate translation by phosphorylatingEIF4E, thus increasing the affinity of this protein for the 7-methylguanosine-containing mRNA cap. {ECO:0000269|PubMed:11463832,ECO:0000269|PubMed:15350534, ECO:0000269|PubMed:9155018,ECO:0000269|PubMed:9878069}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for RABIF_MKNK1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for RABIF_MKNK1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
RABIFITGA3, RAB1A, CCBL2, LAMTOR5, UTP14A, RAB3A, RAB15, ITGA2, ITGA5, ITGA6, TERF2IP, REL, TCF4, RASSF5, AHSA1, KIAA0368, NARS, CBR3, CLIC4, MAT1A, PDXK, PFAS, PNPO, TSTA3, WARS, ZNF544, RAB8B, RAB1B, LHFPL4MKNK1FANCA, MAPK1, EIF4E, EIF4G1, EIF4G2, MAPK3, MAPK14, CREBBP, HSP90AB1, PRKDC, DNAJC7, EIF4G3, DDAH2, ATXN3, UBE2D1, PHAX, SPRY2, APP, RCN3, TNIP2, HGS, HIPK2, MAPK11, MOV10, XPO1, ID1, LLGL2, PDK1, PPIA, RAB5A, MYH13, KIF1C, RNASEH2B, KIF18A, PARD6B, BOD1L1, PAK2, TRIM25


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for RABIF_MKNK1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for RABIF_MKNK1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneMKNK1C0236969Substance-Related Disorders1CTD_human