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Fusion gene ID: 30133 |
FusionGeneSummary for RABIF_MKNK1 |
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Fusion gene information | Fusion gene name: RABIF_MKNK1 | Fusion gene ID: 30133 | Hgene | Tgene | Gene symbol | RABIF | MKNK1 | Gene ID | 5877 | 8569 |
Gene name | RAB interacting factor | MAP kinase interacting serine/threonine kinase 1 | |
Synonyms | MSS4|RASGFR3|RASGRF3 | MNK1 | |
Cytomap | 1q32.1 | 1p33 | |
Type of gene | protein-coding | protein-coding | |
Description | guanine nucleotide exchange factor MSS4Ras-specific guanine-releasing factor 3mammalian suppressor of SEC4rab-interacting factor | MAP kinase-interacting serine/threonine-protein kinase 1MAP kinase signal-integrating kinase 1MAPK signal-integrating kinase 1 | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | P47224 | Q9BUB5 | |
Ensembl transtripts involved in fusion gene | ENST00000367262, | ENST00000371946, ENST00000371945, ENST00000341183, ENST00000428112, ENST00000545730, ENST00000465783, ENST00000525888, ENST00000371944, | |
Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 1 X 1 X 1=1 |
# samples | 1 | 1 | |
** MAII score | log2(1/1*10)=3.32192809488736 | log2(1/1*10)=3.32192809488736 | |
Context | PubMed: RABIF [Title/Abstract] AND MKNK1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | MKNK1 | GO:0006468 | protein phosphorylation | 9155018 |
Tgene | MKNK1 | GO:0018105 | peptidyl-serine phosphorylation | 17130135 |
Tgene | MKNK1 | GO:0035556 | intracellular signal transduction | 9155018 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | SARC | TCGA-DX-AB2O-01A | RABIF | chr1 | 202858101 | - | MKNK1 | chr1 | 47059952 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-5UTR | ENST00000367262 | ENST00000371946 | RABIF | chr1 | 202858101 | - | MKNK1 | chr1 | 47059952 | - |
5CDS-5UTR | ENST00000367262 | ENST00000371945 | RABIF | chr1 | 202858101 | - | MKNK1 | chr1 | 47059952 | - |
5CDS-5UTR | ENST00000367262 | ENST00000341183 | RABIF | chr1 | 202858101 | - | MKNK1 | chr1 | 47059952 | - |
5CDS-5UTR | ENST00000367262 | ENST00000428112 | RABIF | chr1 | 202858101 | - | MKNK1 | chr1 | 47059952 | - |
5CDS-5UTR | ENST00000367262 | ENST00000545730 | RABIF | chr1 | 202858101 | - | MKNK1 | chr1 | 47059952 | - |
5CDS-5UTR | ENST00000367262 | ENST00000465783 | RABIF | chr1 | 202858101 | - | MKNK1 | chr1 | 47059952 | - |
5CDS-5UTR | ENST00000367262 | ENST00000525888 | RABIF | chr1 | 202858101 | - | MKNK1 | chr1 | 47059952 | - |
5CDS-intron | ENST00000367262 | ENST00000371944 | RABIF | chr1 | 202858101 | - | MKNK1 | chr1 | 47059952 | - |
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FusionProtFeatures for RABIF_MKNK1 |
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Hgene | Tgene |
RABIF | MKNK1 |
Guanine-nucleotide-releasing protein that acts onmembers of the SEC4/YPT1/RAB subfamily. Stimulates GDP releasefrom both YPT1 and RAB3A, but is less active on these proteinsthan on the SEC4 protein. Might play a general role in vesiculartransport. | May play a role in the response to environmental stressand cytokines. Appears to regulate translation by phosphorylatingEIF4E, thus increasing the affinity of this protein for the 7-methylguanosine-containing mRNA cap. {ECO:0000269|PubMed:11463832,ECO:0000269|PubMed:15350534, ECO:0000269|PubMed:9155018,ECO:0000269|PubMed:9878069}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for RABIF_MKNK1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for RABIF_MKNK1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
RABIF | ITGA3, RAB1A, CCBL2, LAMTOR5, UTP14A, RAB3A, RAB15, ITGA2, ITGA5, ITGA6, TERF2IP, REL, TCF4, RASSF5, AHSA1, KIAA0368, NARS, CBR3, CLIC4, MAT1A, PDXK, PFAS, PNPO, TSTA3, WARS, ZNF544, RAB8B, RAB1B, LHFPL4 | MKNK1 | FANCA, MAPK1, EIF4E, EIF4G1, EIF4G2, MAPK3, MAPK14, CREBBP, HSP90AB1, PRKDC, DNAJC7, EIF4G3, DDAH2, ATXN3, UBE2D1, PHAX, SPRY2, APP, RCN3, TNIP2, HGS, HIPK2, MAPK11, MOV10, XPO1, ID1, LLGL2, PDK1, PPIA, RAB5A, MYH13, KIF1C, RNASEH2B, KIF18A, PARD6B, BOD1L1, PAK2, TRIM25 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for RABIF_MKNK1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for RABIF_MKNK1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | MKNK1 | C0236969 | Substance-Related Disorders | 1 | CTD_human |