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Fusion gene ID: 29815 |
FusionGeneSummary for QSER1_PRRG4 |
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Fusion gene information | Fusion gene name: QSER1_PRRG4 | Fusion gene ID: 29815 | Hgene | Tgene | Gene symbol | QSER1 | PRRG4 | Gene ID | 79832 | 79056 |
Gene name | glutamine and serine rich 1 | proline rich and Gla domain 4 | |
Synonyms | - | PRGP4|TMG4 | |
Cytomap | 11p13 | 11p13 | |
Type of gene | protein-coding | protein-coding | |
Description | glutamine and serine-rich protein 1 | transmembrane gamma-carboxyglutamic acid protein 4proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)proline rich Gla 4 (transmembrane) isoform 1proline rich Gla 4 (transmembrane) isoform 2proline rich Gla 4 (transmembrane) isoform 3proline-r | |
Modification date | 20180519 | 20180519 | |
UniProtAcc | Q2KHR3 | Q9BZD6 | |
Ensembl transtripts involved in fusion gene | ENST00000399302, ENST00000527250, ENST00000527788, | ENST00000257836, | |
Fusion gene scores | * DoF score | 5 X 4 X 4=80 | 1 X 1 X 1=1 |
# samples | 6 | 1 | |
** MAII score | log2(6/80*10)=-0.415037499278844 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(1/1*10)=3.32192809488736 | |
Context | PubMed: QSER1 [Title/Abstract] AND PRRG4 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | BLCA | TCGA-GC-A3RB-01A | QSER1 | chr11 | 32914880 | + | PRRG4 | chr11 | 32874842 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5UTR-3CDS | ENST00000399302 | ENST00000257836 | QSER1 | chr11 | 32914880 | + | PRRG4 | chr11 | 32874842 | + |
3UTR-3CDS | ENST00000527250 | ENST00000257836 | QSER1 | chr11 | 32914880 | + | PRRG4 | chr11 | 32874842 | + |
intron-3CDS | ENST00000527788 | ENST00000257836 | QSER1 | chr11 | 32914880 | + | PRRG4 | chr11 | 32874842 | + |
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FusionProtFeatures for QSER1_PRRG4 |
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Hgene | Tgene |
QSER1 | PRRG4 |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for QSER1_PRRG4 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for QSER1_PRRG4 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
QSER1 | SOX2, MAGEA10, FHL3, FAM170A, HNRNPH2, PDLIM7, FBXO31, FOXJ2, FOXP1, C11orf30, PHF12, GATAD1, COMMD8, HSPBP1, PLEC, AAK1, SEC24B, CCDC88A, EYA4, UBE2D2, BRD1 | PRRG4 | HLA-C, HDAC1, BCL10, VEGFA, UBE2K, RBBP8, AOC3, STXBP4, YAP1 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for QSER1_PRRG4 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for QSER1_PRRG4 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |