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Fusion gene ID: 29556 |
FusionGeneSummary for PTPRM_ELP4 |
Fusion gene summary |
Fusion gene information | Fusion gene name: PTPRM_ELP4 | Fusion gene ID: 29556 | Hgene | Tgene | Gene symbol | PTPRM | ELP4 | Gene ID | 5797 | 26610 |
Gene name | protein tyrosine phosphatase, receptor type M | elongator acetyltransferase complex subunit 4 | |
Synonyms | PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu | AN|AN2|C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1|hELP4 | |
Cytomap | 18p11.23 | 11p13 | |
Type of gene | protein-coding | protein-coding | |
Description | receptor-type tyrosine-protein phosphatase muprotein tyrosine phosphatase muprotein tyrosine phosphatase, receptor type, mu polypeptide | elongator complex protein 4PAX6 neighbor gene proteinelongation protein 4 homolog | |
Modification date | 20180522 | 20180523 | |
UniProtAcc | P28827 | Q96EB1 | |
Ensembl transtripts involved in fusion gene | ENST00000580170, ENST00000332175, ENST00000400060, ENST00000400053, ENST00000444013, ENST00000578571, | ENST00000350638, ENST00000379163, ENST00000395934, | |
Fusion gene scores | * DoF score | 9 X 8 X 7=504 | 5 X 4 X 5=100 |
# samples | 9 | 5 | |
** MAII score | log2(9/504*10)=-2.48542682717024 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(5/100*10)=-1 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: PTPRM [Title/Abstract] AND ELP4 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | PTPRM | GO:0006470 | protein dephosphorylation | 8393854|10809770 |
Hgene | PTPRM | GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules | 8393854 |
Hgene | PTPRM | GO:0007165 | signal transduction | 15080886 |
Hgene | PTPRM | GO:0031175 | neuron projection development | 16380380 |
Hgene | PTPRM | GO:0031290 | retinal ganglion cell axon guidance | 15080886 |
Hgene | PTPRM | GO:0042493 | response to drug | 18566238 |
Tgene | ELP4 | GO:0006357 | regulation of transcription by RNA polymerase II | 11818576 |
Tgene | ELP4 | GO:0043966 | histone H3 acetylation | 11714725 |
Tgene | ELP4 | GO:0043967 | histone H4 acetylation | 11714725 |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | COAD | TCGA-DM-A1D6-01A | PTPRM | chr18 | 8143777 | + | ELP4 | chr11 | 31804941 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000580170 | ENST00000350638 | PTPRM | chr18 | 8143777 | + | ELP4 | chr11 | 31804941 | + |
Frame-shift | ENST00000580170 | ENST00000379163 | PTPRM | chr18 | 8143777 | + | ELP4 | chr11 | 31804941 | + |
In-frame | ENST00000580170 | ENST00000395934 | PTPRM | chr18 | 8143777 | + | ELP4 | chr11 | 31804941 | + |
Frame-shift | ENST00000332175 | ENST00000350638 | PTPRM | chr18 | 8143777 | + | ELP4 | chr11 | 31804941 | + |
Frame-shift | ENST00000332175 | ENST00000379163 | PTPRM | chr18 | 8143777 | + | ELP4 | chr11 | 31804941 | + |
In-frame | ENST00000332175 | ENST00000395934 | PTPRM | chr18 | 8143777 | + | ELP4 | chr11 | 31804941 | + |
Frame-shift | ENST00000400060 | ENST00000350638 | PTPRM | chr18 | 8143777 | + | ELP4 | chr11 | 31804941 | + |
Frame-shift | ENST00000400060 | ENST00000379163 | PTPRM | chr18 | 8143777 | + | ELP4 | chr11 | 31804941 | + |
In-frame | ENST00000400060 | ENST00000395934 | PTPRM | chr18 | 8143777 | + | ELP4 | chr11 | 31804941 | + |
Frame-shift | ENST00000400053 | ENST00000350638 | PTPRM | chr18 | 8143777 | + | ELP4 | chr11 | 31804941 | + |
Frame-shift | ENST00000400053 | ENST00000379163 | PTPRM | chr18 | 8143777 | + | ELP4 | chr11 | 31804941 | + |
In-frame | ENST00000400053 | ENST00000395934 | PTPRM | chr18 | 8143777 | + | ELP4 | chr11 | 31804941 | + |
Frame-shift | ENST00000444013 | ENST00000350638 | PTPRM | chr18 | 8143777 | + | ELP4 | chr11 | 31804941 | + |
Frame-shift | ENST00000444013 | ENST00000379163 | PTPRM | chr18 | 8143777 | + | ELP4 | chr11 | 31804941 | + |
In-frame | ENST00000444013 | ENST00000395934 | PTPRM | chr18 | 8143777 | + | ELP4 | chr11 | 31804941 | + |
intron-3CDS | ENST00000578571 | ENST00000350638 | PTPRM | chr18 | 8143777 | + | ELP4 | chr11 | 31804941 | + |
intron-3CDS | ENST00000578571 | ENST00000379163 | PTPRM | chr18 | 8143777 | + | ELP4 | chr11 | 31804941 | + |
intron-3CDS | ENST00000578571 | ENST00000395934 | PTPRM | chr18 | 8143777 | + | ELP4 | chr11 | 31804941 | + |
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FusionProtFeatures for PTPRM_ELP4 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
PTPRM | ELP4 |
Involved in cell-cell adhesion through homophilicinteractions. May play a key role in signal transduction andgrowth control. {ECO:0000269|PubMed:16456543}. | Acts as subunit of the RNA polymerase II elongatorcomplex, which is a histone acetyltransferase component of the RNApolymerase II (Pol II) holoenzyme and is involved intranscriptional elongation. Elongator may play a role in chromatinremodeling and is involved in acetylation of histones H3 andprobably H4. {ECO:0000269|PubMed:11714725,ECO:0000269|PubMed:11818576, ECO:0000269|PubMed:16713582}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for PTPRM_ELP4 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_PTPRM_ENST00000580170_chr18_8143777_+_ELP4_ENST00000395934_chr11_31804941_+_779aa MRGLGTCLATLAGLLLTAAGETFSGGCLFDEPYSTCGYSQSEGDDFNWEQVNTLTKPTSDPWMPSGSFMLVNASGRPEGQRAHLLLPQLK ENDTHCIDFHYFVSSKSNSPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGH PCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGI SNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGE GGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLS PYTNVSVKLILMNPEGRKESQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVS KLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPAHSRGAPVSVYQIVVEEERP RRTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCVQVA >In-frame_PTPRM_ENST00000332175_chr18_8143777_+_ELP4_ENST00000395934_chr11_31804941_+_779aa MRGLGTCLATLAGLLLTAAGETFSGGCLFDEPYSTCGYSQSEGDDFNWEQVNTLTKPTSDPWMPSGSFMLVNASGRPEGQRAHLLLPQLK ENDTHCIDFHYFVSSKSNSPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGH PCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGI SNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGE GGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLS PYTNVSVKLILMNPEGRKESQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVS KLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPAHSRGAPVSVYQIVVEEERP RRTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCVQVA >In-frame_PTPRM_ENST00000400060_chr18_8143777_+_ELP4_ENST00000395934_chr11_31804941_+_779aa MRGLGTCLATLAGLLLTAAGETFSGGCLFDEPYSTCGYSQSEGDDFNWEQVNTLTKPTSDPWMPSGSFMLVNASGRPEGQRAHLLLPQLK ENDTHCIDFHYFVSSKSNSPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGH PCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGI SNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGE GGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLS PYTNVSVKLILMNPEGRKESQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVS KLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPAHSRGAPVSVYQIVVEEERP RRTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCVQVA >In-frame_PTPRM_ENST00000400053_chr18_8143777_+_ELP4_ENST00000395934_chr11_31804941_+_717aa MPSGSFMLVNASGRPEGQRAHLLLPQLKENDTHCIDFHYFVSSKSNSPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWP NFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFI ASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQP VDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQ VGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKESQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGV ITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQFTTKISAPSMPAYELETPLNQTDN TVTVMLKPAHSRGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPL >In-frame_PTPRM_ENST00000444013_chr18_8143777_+_ELP4_ENST00000395934_chr11_31804941_+_566aa MGTLSLHPGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLN ANSINGDGPIVAREVEYCTASGSWNDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKS RQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKESQELIVQTDEDLPG AVPTESIQGSTFEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGP PATNQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPAHSRGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASLLNSQYYFAA EFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCVQVATKGAATPKPVPEPEKQTDHTVKIAGVIAGILLF |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_PTPRM_ENST00000580170_chr18_8143777_+_ELP4_ENST00000395934_chr11_31804941_+_2337nt ATGAGGGGACTTGGGACTTGCCTGGCGACTTTGGCCGGACTTTTGCTAACTGCGGCGGGCGAGACGTTCTCAGGTGGCTGCCTCTTTGAT GAGCCGTATAGCACATGTGGATATAGTCAATCTGAAGGTGATGACTTCAATTGGGAGCAAGTGAACACCTTGACTAAACCGACTTCTGAT CCATGGATGCCATCAGGTTCTTTCATGCTGGTGAATGCCTCTGGGAGACCTGAGGGGCAGAGAGCCCACCTGCTCTTACCCCAACTTAAA GAAAATGACACCCACTGCATCGATTTTCACTATTTTGTGTCCAGCAAGAGTAATTCTCCTCCGGGGTTACTCAATGTCTACGTGAAGGTC AATAACGGGCCACTGGGGAATCCTATCTGGAATATATCTGGAGACCCAACACGTACATGGAACAGGGCAGAACTGGCCATTAGTACTTTC TGGCCTAACTTTTATCAGGTGATTTTTGAAGTGATAACTTCTGGACATCAAGGCTATCTCGCTATCGATGAGGTGAAGGTGTTAGGACAT CCATGTACCAGGACTCCTCACTTCCTGCGGATTCAGAATGTGGAAGTTAATGCTGGCCAGTTTGCTACCTTCCAGTGCAGTGCCATCGGC AGGACCGTGGCAGGAGACAGGCTCTGGTTACAGGGCATTGATGTGCGAGATGCTCCTCTGAAGGAAATCAAGGTGACCAGCTCCCGACGC TTCATTGCTTCATTTAATGTTGTGAATACCACCAAACGAGATGCTGGAAAGTACCGCTGCATGATTCGCACTGAAGGAGGTGTTGGAATA TCAAACTATGCAGAGTTGGTAGTTAAAGAACCACCCGTTCCTATTGCCCCACCTCAGCTCGCCTCTGTAGGAGCCACCTACCTGTGGATA CAGCTCAACGCCAACTCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAGGTGGAGTACTGCACGGCCAGTGGGAGCTGGAATGACCGG CAGCCAGTCGATTCCACGAGCTATAAAATTGGACACCTTGACCCAGATACAGAATATGAGATTAGTGTGCTCCTGACCAGGCCAGGGGAG GGTGGCACTGGCTCTCCTGGTCCAGCTCTCAGGACAAGAACAAAGTGTGCTGATCCCATGCGAGGCCCAAGAAAACTAGAAGTAGTGGAG GTCAAATCTCGGCAAATCACTATCCGCTGGGAGCCATTTGGATATAATGTAACTCGTTGCCACAGTTATAATCTCACTGTCCACTACTGT TACCAAGTTGGAGGACAAGAACAAGTGCGAGAAGAAGTAAGCTGGGATACAGAAAACTCACACCCTCAACACACGATCACTAACCTGTCA CCATACACCAATGTCAGTGTGAAACTGATCCTCATGAACCCAGAGGGCCGGAAGGAAAGCCAAGAACTCATAGTGCAGACAGATGAAGAC CTCCCAGGTGCTGTTCCCACTGAATCCATACAAGGAAGTACCTTTGAAGAGAAGATATTTCTTCAGTGGAGAGAACCAACTCAAACATAT GGTGTAATCACTTTATATGAGATCACCTACAAAGCAGTCAGTTCCTTTGACCCAGAAATAGATTTATCCAATCAGAGTGGAAGAGTTTCA AAGCTGGGAAATGAAACCCATTTTCTGTTTTTTGGACTGTATCCGGGGACCACATACTCCTTTACCATCCGAGCTAGCACAGCTAAGGGT TTTGGGCCTCCAGCAACAAACCAGTTCACCACCAAAATATCAGCACCCTCTATGCCAGCTTATGAACTTGAGACACCTTTGAATCAAACT GACAATACCGTGACAGTCATGCTGAAACCTGCCCACAGCAGAGGAGCACCTGTCAGTGTCTATCAAATAGTTGTTGAGGAAGAACGTCCT CGAAGAACTAAAAAGACGACAGAAATCTTAAAGTGCTACCCAGTGCCAATTCACTTCCAGAATGCTTCTCTGCTGAACTCACAGTACTAC TTTGCTGCAGAATTTCCTGCAGACAGCCTCCAAGCTGCGCAGCCTTTTACAATTGGTGATAATAAGACATATAATGGATACTGGAACACT CCCCTTCTCCCCTATAAAAGCTACAGAATTTATTTCCAAGCTGCTAGTAGAGCCAATGGGGAAACCAAAATAGACTGTGTCCAAGTGGCC ACAAAAGGAGCTGCCACTCCGAAACCAGTCCCAGAACCCGAGAAACAGACAGACCATACAGTTAAAATTGCTGGAGTCATCGCGGGCATC >In-frame_PTPRM_ENST00000332175_chr18_8143777_+_ELP4_ENST00000395934_chr11_31804941_+_2337nt ATGAGGGGACTTGGGACTTGCCTGGCGACTTTGGCCGGACTTTTGCTAACTGCGGCGGGCGAGACGTTCTCAGGTGGCTGCCTCTTTGAT GAGCCGTATAGCACATGTGGATATAGTCAATCTGAAGGTGATGACTTCAATTGGGAGCAAGTGAACACCTTGACTAAACCGACTTCTGAT CCATGGATGCCATCAGGTTCTTTCATGCTGGTGAATGCCTCTGGGAGACCTGAGGGGCAGAGAGCCCACCTGCTCTTACCCCAACTTAAA GAAAATGACACCCACTGCATCGATTTTCACTATTTTGTGTCCAGCAAGAGTAATTCTCCTCCGGGGTTACTCAATGTCTACGTGAAGGTC AATAACGGGCCACTGGGGAATCCTATCTGGAATATATCTGGAGACCCAACACGTACATGGAACAGGGCAGAACTGGCCATTAGTACTTTC TGGCCTAACTTTTATCAGGTGATTTTTGAAGTGATAACTTCTGGACATCAAGGCTATCTCGCTATCGATGAGGTGAAGGTGTTAGGACAT CCATGTACCAGGACTCCTCACTTCCTGCGGATTCAGAATGTGGAAGTTAATGCTGGCCAGTTTGCTACCTTCCAGTGCAGTGCCATCGGC AGGACCGTGGCAGGAGACAGGCTCTGGTTACAGGGCATTGATGTGCGAGATGCTCCTCTGAAGGAAATCAAGGTGACCAGCTCCCGACGC TTCATTGCTTCATTTAATGTTGTGAATACCACCAAACGAGATGCTGGAAAGTACCGCTGCATGATTCGCACTGAAGGAGGTGTTGGAATA TCAAACTATGCAGAGTTGGTAGTTAAAGAACCACCCGTTCCTATTGCCCCACCTCAGCTCGCCTCTGTAGGAGCCACCTACCTGTGGATA CAGCTCAACGCCAACTCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAGGTGGAGTACTGCACGGCCAGTGGGAGCTGGAATGACCGG CAGCCAGTCGATTCCACGAGCTATAAAATTGGACACCTTGACCCAGATACAGAATATGAGATTAGTGTGCTCCTGACCAGGCCAGGGGAG GGTGGCACTGGCTCTCCTGGTCCAGCTCTCAGGACAAGAACAAAGTGTGCTGATCCCATGCGAGGCCCAAGAAAACTAGAAGTAGTGGAG GTCAAATCTCGGCAAATCACTATCCGCTGGGAGCCATTTGGATATAATGTAACTCGTTGCCACAGTTATAATCTCACTGTCCACTACTGT TACCAAGTTGGAGGACAAGAACAAGTGCGAGAAGAAGTAAGCTGGGATACAGAAAACTCACACCCTCAACACACGATCACTAACCTGTCA CCATACACCAATGTCAGTGTGAAACTGATCCTCATGAACCCAGAGGGCCGGAAGGAAAGCCAAGAACTCATAGTGCAGACAGATGAAGAC CTCCCAGGTGCTGTTCCCACTGAATCCATACAAGGAAGTACCTTTGAAGAGAAGATATTTCTTCAGTGGAGAGAACCAACTCAAACATAT GGTGTAATCACTTTATATGAGATCACCTACAAAGCAGTCAGTTCCTTTGACCCAGAAATAGATTTATCCAATCAGAGTGGAAGAGTTTCA AAGCTGGGAAATGAAACCCATTTTCTGTTTTTTGGACTGTATCCGGGGACCACATACTCCTTTACCATCCGAGCTAGCACAGCTAAGGGT TTTGGGCCTCCAGCAACAAACCAGTTCACCACCAAAATATCAGCACCCTCTATGCCAGCTTATGAACTTGAGACACCTTTGAATCAAACT GACAATACCGTGACAGTCATGCTGAAACCTGCCCACAGCAGAGGAGCACCTGTCAGTGTCTATCAAATAGTTGTTGAGGAAGAACGTCCT CGAAGAACTAAAAAGACGACAGAAATCTTAAAGTGCTACCCAGTGCCAATTCACTTCCAGAATGCTTCTCTGCTGAACTCACAGTACTAC TTTGCTGCAGAATTTCCTGCAGACAGCCTCCAAGCTGCGCAGCCTTTTACAATTGGTGATAATAAGACATATAATGGATACTGGAACACT CCCCTTCTCCCCTATAAAAGCTACAGAATTTATTTCCAAGCTGCTAGTAGAGCCAATGGGGAAACCAAAATAGACTGTGTCCAAGTGGCC ACAAAAGGAGCTGCCACTCCGAAACCAGTCCCAGAACCCGAGAAACAGACAGACCATACAGTTAAAATTGCTGGAGTCATCGCGGGCATC >In-frame_PTPRM_ENST00000400060_chr18_8143777_+_ELP4_ENST00000395934_chr11_31804941_+_2337nt ATGAGGGGACTTGGGACTTGCCTGGCGACTTTGGCCGGACTTTTGCTAACTGCGGCGGGCGAGACGTTCTCAGGTGGCTGCCTCTTTGAT GAGCCGTATAGCACATGTGGATATAGTCAATCTGAAGGTGATGACTTCAATTGGGAGCAAGTGAACACCTTGACTAAACCGACTTCTGAT CCATGGATGCCATCAGGTTCTTTCATGCTGGTGAATGCCTCTGGGAGACCTGAGGGGCAGAGAGCCCACCTGCTCTTACCCCAACTTAAA GAAAATGACACCCACTGCATCGATTTTCACTATTTTGTGTCCAGCAAGAGTAATTCTCCTCCGGGGTTACTCAATGTCTACGTGAAGGTC AATAACGGGCCACTGGGGAATCCTATCTGGAATATATCTGGAGACCCAACACGTACATGGAACAGGGCAGAACTGGCCATTAGTACTTTC TGGCCTAACTTTTATCAGGTGATTTTTGAAGTGATAACTTCTGGACATCAAGGCTATCTCGCTATCGATGAGGTGAAGGTGTTAGGACAT CCATGTACCAGGACTCCTCACTTCCTGCGGATTCAGAATGTGGAAGTTAATGCTGGCCAGTTTGCTACCTTCCAGTGCAGTGCCATCGGC AGGACCGTGGCAGGAGACAGGCTCTGGTTACAGGGCATTGATGTGCGAGATGCTCCTCTGAAGGAAATCAAGGTGACCAGCTCCCGACGC TTCATTGCTTCATTTAATGTTGTGAATACCACCAAACGAGATGCTGGAAAGTACCGCTGCATGATTCGCACTGAAGGAGGTGTTGGAATA TCAAACTATGCAGAGTTGGTAGTTAAAGAACCACCCGTTCCTATTGCCCCACCTCAGCTCGCCTCTGTAGGAGCCACCTACCTGTGGATA CAGCTCAACGCCAACTCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAGGTGGAGTACTGCACGGCCAGTGGGAGCTGGAATGACCGG CAGCCAGTCGATTCCACGAGCTATAAAATTGGACACCTTGACCCAGATACAGAATATGAGATTAGTGTGCTCCTGACCAGGCCAGGGGAG GGTGGCACTGGCTCTCCTGGTCCAGCTCTCAGGACAAGAACAAAGTGTGCTGATCCCATGCGAGGCCCAAGAAAACTAGAAGTAGTGGAG GTCAAATCTCGGCAAATCACTATCCGCTGGGAGCCATTTGGATATAATGTAACTCGTTGCCACAGTTATAATCTCACTGTCCACTACTGT TACCAAGTTGGAGGACAAGAACAAGTGCGAGAAGAAGTAAGCTGGGATACAGAAAACTCACACCCTCAACACACGATCACTAACCTGTCA CCATACACCAATGTCAGTGTGAAACTGATCCTCATGAACCCAGAGGGCCGGAAGGAAAGCCAAGAACTCATAGTGCAGACAGATGAAGAC CTCCCAGGTGCTGTTCCCACTGAATCCATACAAGGAAGTACCTTTGAAGAGAAGATATTTCTTCAGTGGAGAGAACCAACTCAAACATAT GGTGTAATCACTTTATATGAGATCACCTACAAAGCAGTCAGTTCCTTTGACCCAGAAATAGATTTATCCAATCAGAGTGGAAGAGTTTCA AAGCTGGGAAATGAAACCCATTTTCTGTTTTTTGGACTGTATCCGGGGACCACATACTCCTTTACCATCCGAGCTAGCACAGCTAAGGGT TTTGGGCCTCCAGCAACAAACCAGTTCACCACCAAAATATCAGCACCCTCTATGCCAGCTTATGAACTTGAGACACCTTTGAATCAAACT GACAATACCGTGACAGTCATGCTGAAACCTGCCCACAGCAGAGGAGCACCTGTCAGTGTCTATCAAATAGTTGTTGAGGAAGAACGTCCT CGAAGAACTAAAAAGACGACAGAAATCTTAAAGTGCTACCCAGTGCCAATTCACTTCCAGAATGCTTCTCTGCTGAACTCACAGTACTAC TTTGCTGCAGAATTTCCTGCAGACAGCCTCCAAGCTGCGCAGCCTTTTACAATTGGTGATAATAAGACATATAATGGATACTGGAACACT CCCCTTCTCCCCTATAAAAGCTACAGAATTTATTTCCAAGCTGCTAGTAGAGCCAATGGGGAAACCAAAATAGACTGTGTCCAAGTGGCC ACAAAAGGAGCTGCCACTCCGAAACCAGTCCCAGAACCCGAGAAACAGACAGACCATACAGTTAAAATTGCTGGAGTCATCGCGGGCATC >In-frame_PTPRM_ENST00000400053_chr18_8143777_+_ELP4_ENST00000395934_chr11_31804941_+_2151nt ATGCCATCAGGTTCTTTCATGCTGGTGAATGCCTCTGGGAGACCTGAGGGGCAGAGAGCCCACCTGCTCTTACCCCAACTTAAAGAAAAT GACACCCACTGCATCGATTTTCACTATTTTGTGTCCAGCAAGAGTAATTCTCCTCCGGGGTTACTCAATGTCTACGTGAAGGTCAATAAC GGGCCACTGGGGAATCCTATCTGGAATATATCTGGAGACCCAACACGTACATGGAACAGGGCAGAACTGGCCATTAGTACTTTCTGGCCT AACTTTTATCAGGTGATTTTTGAAGTGATAACTTCTGGACATCAAGGCTATCTCGCTATCGATGAGGTGAAGGTGTTAGGACATCCATGT ACCAGGACTCCTCACTTCCTGCGGATTCAGAATGTGGAAGTTAATGCTGGCCAGTTTGCTACCTTCCAGTGCAGTGCCATCGGCAGGACC GTGGCAGGAGACAGGCTCTGGTTACAGGGCATTGATGTGCGAGATGCTCCTCTGAAGGAAATCAAGGTGACCAGCTCCCGACGCTTCATT GCTTCATTTAATGTTGTGAATACCACCAAACGAGATGCTGGAAAGTACCGCTGCATGATTCGCACTGAAGGAGGTGTTGGAATATCAAAC TATGCAGAGTTGGTAGTTAAAGAACCACCCGTTCCTATTGCCCCACCTCAGCTCGCCTCTGTAGGAGCCACCTACCTGTGGATACAGCTC AACGCCAACTCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAGGTGGAGTACTGCACGGCCAGTGGGAGCTGGAATGACCGGCAGCCA GTCGATTCCACGAGCTATAAAATTGGACACCTTGACCCAGATACAGAATATGAGATTAGTGTGCTCCTGACCAGGCCAGGGGAGGGTGGC ACTGGCTCTCCTGGTCCAGCTCTCAGGACAAGAACAAAGTGTGCTGATCCCATGCGAGGCCCAAGAAAACTAGAAGTAGTGGAGGTCAAA TCTCGGCAAATCACTATCCGCTGGGAGCCATTTGGATATAATGTAACTCGTTGCCACAGTTATAATCTCACTGTCCACTACTGTTACCAA GTTGGAGGACAAGAACAAGTGCGAGAAGAAGTAAGCTGGGATACAGAAAACTCACACCCTCAACACACGATCACTAACCTGTCACCATAC ACCAATGTCAGTGTGAAACTGATCCTCATGAACCCAGAGGGCCGGAAGGAAAGCCAAGAACTCATAGTGCAGACAGATGAAGACCTCCCA GGTGCTGTTCCCACTGAATCCATACAAGGAAGTACCTTTGAAGAGAAGATATTTCTTCAGTGGAGAGAACCAACTCAAACATATGGTGTA ATCACTTTATATGAGATCACCTACAAAGCAGTCAGTTCCTTTGACCCAGAAATAGATTTATCCAATCAGAGTGGAAGAGTTTCAAAGCTG GGAAATGAAACCCATTTTCTGTTTTTTGGACTGTATCCGGGGACCACATACTCCTTTACCATCCGAGCTAGCACAGCTAAGGGTTTTGGG CCTCCAGCAACAAACCAGTTCACCACCAAAATATCAGCACCCTCTATGCCAGCTTATGAACTTGAGACACCTTTGAATCAAACTGACAAT ACCGTGACAGTCATGCTGAAACCTGCCCACAGCAGAGGAGCACCTGTCAGTGTCTATCAAATAGTTGTTGAGGAAGAACGTCCTCGAAGA ACTAAAAAGACGACAGAAATCTTAAAGTGCTACCCAGTGCCAATTCACTTCCAGAATGCTTCTCTGCTGAACTCACAGTACTACTTTGCT GCAGAATTTCCTGCAGACAGCCTCCAAGCTGCGCAGCCTTTTACAATTGGTGATAATAAGACATATAATGGATACTGGAACACTCCCCTT CTCCCCTATAAAAGCTACAGAATTTATTTCCAAGCTGCTAGTAGAGCCAATGGGGAAACCAAAATAGACTGTGTCCAAGTGGCCACAAAA GGAGCTGCCACTCCGAAACCAGTCCCAGAACCCGAGAAACAGACAGACCATACAGTTAAAATTGCTGGAGTCATCGCGGGCATCTTGCTG >In-frame_PTPRM_ENST00000444013_chr18_8143777_+_ELP4_ENST00000395934_chr11_31804941_+_1698nt ATGGGAACCCTCTCCCTCCATCCTGGCATTGATGTGCGAGATGCTCCTCTGAAGGAAATCAAGGTGACCAGCTCCCGACGCTTCATTGCT TCATTTAATGTTGTGAATACCACCAAACGAGATGCTGGAAAGTACCGCTGCATGATTCGCACTGAAGGAGGTGTTGGAATATCAAACTAT GCAGAGTTGGTAGTTAAAGAACCACCCGTTCCTATTGCCCCACCTCAGCTCGCCTCTGTAGGAGCCACCTACCTGTGGATACAGCTCAAC GCCAACTCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAGGTGGAGTACTGCACGGCCAGTGGGAGCTGGAATGACCGGCAGCCAGTC GATTCCACGAGCTATAAAATTGGACACCTTGACCCAGATACAGAATATGAGATTAGTGTGCTCCTGACCAGGCCAGGGGAGGGTGGCACT GGCTCTCCTGGTCCAGCTCTCAGGACAAGAACAAAGTGTGCTGATCCCATGCGAGGCCCAAGAAAACTAGAAGTAGTGGAGGTCAAATCT CGGCAAATCACTATCCGCTGGGAGCCATTTGGATATAATGTAACTCGTTGCCACAGTTATAATCTCACTGTCCACTACTGTTACCAAGTT GGAGGACAAGAACAAGTGCGAGAAGAAGTAAGCTGGGATACAGAAAACTCACACCCTCAACACACGATCACTAACCTGTCACCATACACC AATGTCAGTGTGAAACTGATCCTCATGAACCCAGAGGGCCGGAAGGAAAGCCAAGAACTCATAGTGCAGACAGATGAAGACCTCCCAGGT GCTGTTCCCACTGAATCCATACAAGGAAGTACCTTTGAAGAGAAGATATTTCTTCAGTGGAGAGAACCAACTCAAACATATGGTGTAATC ACTTTATATGAGATCACCTACAAAGCAGTCAGTTCCTTTGACCCAGAAATAGATTTATCCAATCAGAGTGGAAGAGTTTCAAAGCTGGGA AATGAAACCCATTTTCTGTTTTTTGGACTGTATCCGGGGACCACATACTCCTTTACCATCCGAGCTAGCACAGCTAAGGGTTTTGGGCCT CCAGCAACAAACCAGTTCACCACCAAAATATCAGCACCCTCTATGCCAGCTTATGAACTTGAGACACCTTTGAATCAAACTGACAATACC GTGACAGTCATGCTGAAACCTGCCCACAGCAGAGGAGCACCTGTCAGTGTCTATCAAATAGTTGTTGAGGAAGAACGTCCTCGAAGAACT AAAAAGACGACAGAAATCTTAAAGTGCTACCCAGTGCCAATTCACTTCCAGAATGCTTCTCTGCTGAACTCACAGTACTACTTTGCTGCA GAATTTCCTGCAGACAGCCTCCAAGCTGCGCAGCCTTTTACAATTGGTGATAATAAGACATATAATGGATACTGGAACACTCCCCTTCTC CCCTATAAAAGCTACAGAATTTATTTCCAAGCTGCTAGTAGAGCCAATGGGGAAACCAAAATAGACTGTGTCCAAGTGGCCACAAAAGGA GCTGCCACTCCGAAACCAGTCCCAGAACCCGAGAAACAGACAGACCATACAGTTAAAATTGCTGGAGTCATCGCGGGCATCTTGCTGTTC |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_PTPRM_ENST00000580170_chr18_8143777_+_ELP4_ENST00000395934_chr11_31804941_+_3720nt GCGGCGTAGAGAAGCTCGCAGCCCTCCGGAGCCTCAGCGATCTCCTGGCTCGCTTTTCCCGCAGCCGCCGAGCAGCGCAGGCCCGGCGAC TCCGGGTGCAGCTGGCCCTGTGCGGTGACATCGCCGTCCGGCGCCAGGCTCGAAGCCGCCTGGCCGCGCCCGCGGGGTCGCAGGCCGCTG GTCCCGCCCGGCCGCGCTCACAAACTACTCGCGGCTCGTGACCCGGGACAAACTTCTGGCGGCGGCGCAGCCTCTTCCACAGTCACCCTC CCCAGAGCCAGCTACCAAAATAGAAGACGCGGCCGGGGCGAGGAGGTGGGCGGGGGGAGCCCGGTGGCCGCTCCTCCCCGCGCGGCTGAC GCCCGCTTCGGCGGCGGTAGTGGCTGTGGCCGCGGGGCCGCCCCCAGCCGAGCTCCCGGAGGCGCTCGGGCGCGGGCCGGCGGGGCACGG GCGCTCACGCCCTCTAGCGGGCCGCGGCGGCGCCGGGCGGCCGTGACGTGAGCGCTCCCTTCAGCCGGCCTGCGGGGCACCGCCAGTCAG TCGGGGAGCAAGAGCCCCGCGCGCAGCCGGCGCGGGCTCGGTCATCGGCGCGCCGCCGCCCGGGGCTGGGCTTGGGGCTGCCTGTGGAGA GGCGGCGGGCGGAACGCGCGCGGCCACGGCCACGGCCACCGCCACGGCCACGGCCGGCAGCTCGGGTCCCGGGTCCCGGGCAGGGGAAGG GGAGAGGCGGCGAGCTCAGCAACCGGAACCGAGGGAAGATTTTGGCTCCGCGGGCTCGCCCTCCGCTCCCTCTGCCAGCGGCGCCAGACG CCGAGTGGGGCCAGGGACAGGGGAGGAGGACCCAGGACCCTGTGCCCGCGCCCCTGGAGCCGCTGGAGTTCGGACTTCTGCAACTGTTGG CACTTTGGGGGCTTGGCTTAGCGCTCTGCTGTTTACCCGTCTCTCCTCGCTGCCTCGGAACCAAAGCTCCCGGCCCCCTCCGCCCTCGCG CGCCCACCCACCGCCGCCGGGGAGCGGCCCGGCCCGCACTCAGCACCATGAGGGGACTTGGGACTTGCCTGGCGACTTTGGCCGGACTTT TGCTAACTGCGGCGGGCGAGACGTTCTCAGGTGGCTGCCTCTTTGATGAGCCGTATAGCACATGTGGATATAGTCAATCTGAAGGTGATG ACTTCAATTGGGAGCAAGTGAACACCTTGACTAAACCGACTTCTGATCCATGGATGCCATCAGGTTCTTTCATGCTGGTGAATGCCTCTG GGAGACCTGAGGGGCAGAGAGCCCACCTGCTCTTACCCCAACTTAAAGAAAATGACACCCACTGCATCGATTTTCACTATTTTGTGTCCA GCAAGAGTAATTCTCCTCCGGGGTTACTCAATGTCTACGTGAAGGTCAATAACGGGCCACTGGGGAATCCTATCTGGAATATATCTGGAG ACCCAACACGTACATGGAACAGGGCAGAACTGGCCATTAGTACTTTCTGGCCTAACTTTTATCAGGTGATTTTTGAAGTGATAACTTCTG GACATCAAGGCTATCTCGCTATCGATGAGGTGAAGGTGTTAGGACATCCATGTACCAGGACTCCTCACTTCCTGCGGATTCAGAATGTGG AAGTTAATGCTGGCCAGTTTGCTACCTTCCAGTGCAGTGCCATCGGCAGGACCGTGGCAGGAGACAGGCTCTGGTTACAGGGCATTGATG TGCGAGATGCTCCTCTGAAGGAAATCAAGGTGACCAGCTCCCGACGCTTCATTGCTTCATTTAATGTTGTGAATACCACCAAACGAGATG CTGGAAAGTACCGCTGCATGATTCGCACTGAAGGAGGTGTTGGAATATCAAACTATGCAGAGTTGGTAGTTAAAGAACCACCCGTTCCTA TTGCCCCACCTCAGCTCGCCTCTGTAGGAGCCACCTACCTGTGGATACAGCTCAACGCCAACTCCATCAATGGGGATGGGCCCATTGTGG CCCGAGAGGTGGAGTACTGCACGGCCAGTGGGAGCTGGAATGACCGGCAGCCAGTCGATTCCACGAGCTATAAAATTGGACACCTTGACC CAGATACAGAATATGAGATTAGTGTGCTCCTGACCAGGCCAGGGGAGGGTGGCACTGGCTCTCCTGGTCCAGCTCTCAGGACAAGAACAA AGTGTGCTGATCCCATGCGAGGCCCAAGAAAACTAGAAGTAGTGGAGGTCAAATCTCGGCAAATCACTATCCGCTGGGAGCCATTTGGAT ATAATGTAACTCGTTGCCACAGTTATAATCTCACTGTCCACTACTGTTACCAAGTTGGAGGACAAGAACAAGTGCGAGAAGAAGTAAGCT GGGATACAGAAAACTCACACCCTCAACACACGATCACTAACCTGTCACCATACACCAATGTCAGTGTGAAACTGATCCTCATGAACCCAG AGGGCCGGAAGGAAAGCCAAGAACTCATAGTGCAGACAGATGAAGACCTCCCAGGTGCTGTTCCCACTGAATCCATACAAGGAAGTACCT TTGAAGAGAAGATATTTCTTCAGTGGAGAGAACCAACTCAAACATATGGTGTAATCACTTTATATGAGATCACCTACAAAGCAGTCAGTT CCTTTGACCCAGAAATAGATTTATCCAATCAGAGTGGAAGAGTTTCAAAGCTGGGAAATGAAACCCATTTTCTGTTTTTTGGACTGTATC CGGGGACCACATACTCCTTTACCATCCGAGCTAGCACAGCTAAGGGTTTTGGGCCTCCAGCAACAAACCAGTTCACCACCAAAATATCAG CACCCTCTATGCCAGCTTATGAACTTGAGACACCTTTGAATCAAACTGACAATACCGTGACAGTCATGCTGAAACCTGCCCACAGCAGAG GAGCACCTGTCAGTGTCTATCAAATAGTTGTTGAGGAAGAACGTCCTCGAAGAACTAAAAAGACGACAGAAATCTTAAAGTGCTACCCAG TGCCAATTCACTTCCAGAATGCTTCTCTGCTGAACTCACAGTACTACTTTGCTGCAGAATTTCCTGCAGACAGCCTCCAAGCTGCGCAGC CTTTTACAATTGGTGATAATAAGACATATAATGGATACTGGAACACTCCCCTTCTCCCCTATAAAAGCTACAGAATTTATTTCCAAGCTG CTAGTAGAGCCAATGGGGAAACCAAAATAGACTGTGTCCAAGTGGCCACAAAAGGAGCTGCCACTCCGAAACCAGTCCCAGAACCCGAGA AACAGACAGACCATACAGTTAAAATTGCTGGAGTCATCGCGGGCATCTTGCTGTTCGTGATTATATTTCTTGGAGTTGTGTTGGTAATGA AGAAAAGCGACTGCATTTGCCTCCAGACTTGTCAGACACAGTGAGCCGCTCAAGCAAAATGGATCTGGCAGAATCCGCCAAGCGGCTGGG CCCAGGCTGTGGCATGATGGCCGGAGGCAAGAAGCACCTGGACTTCTAGGGATTCCTCCTTAGTCGCTGCATGCAGAATTCTATGACACT CTAATTATGATTGCTAATAGCTTATGTAAATATTTTTCTTAACAATTTGACCCTCCACTCCTTGAAAAACACAGGATTATAAAATGGTGC CGCCATTTCTCATTTTTTAACTTTTTACAGAACTAGCACAGCAGAAATACTTTTAAATTTTTCCTTCATGCTCTAGAGAAAATAATTTTA >In-frame_PTPRM_ENST00000332175_chr18_8143777_+_ELP4_ENST00000395934_chr11_31804941_+_3720nt GCGGCGTAGAGAAGCTCGCAGCCCTCCGGAGCCTCAGCGATCTCCTGGCTCGCTTTTCCCGCAGCCGCCGAGCAGCGCAGGCCCGGCGAC TCCGGGTGCAGCTGGCCCTGTGCGGTGACATCGCCGTCCGGCGCCAGGCTCGAAGCCGCCTGGCCGCGCCCGCGGGGTCGCAGGCCGCTG GTCCCGCCCGGCCGCGCTCACAAACTACTCGCGGCTCGTGACCCGGGACAAACTTCTGGCGGCGGCGCAGCCTCTTCCACAGTCACCCTC CCCAGAGCCAGCTACCAAAATAGAAGACGCGGCCGGGGCGAGGAGGTGGGCGGGGGGAGCCCGGTGGCCGCTCCTCCCCGCGCGGCTGAC GCCCGCTTCGGCGGCGGTAGTGGCTGTGGCCGCGGGGCCGCCCCCAGCCGAGCTCCCGGAGGCGCTCGGGCGCGGGCCGGCGGGGCACGG GCGCTCACGCCCTCTAGCGGGCCGCGGCGGCGCCGGGCGGCCGTGACGTGAGCGCTCCCTTCAGCCGGCCTGCGGGGCACCGCCAGTCAG TCGGGGAGCAAGAGCCCCGCGCGCAGCCGGCGCGGGCTCGGTCATCGGCGCGCCGCCGCCCGGGGCTGGGCTTGGGGCTGCCTGTGGAGA GGCGGCGGGCGGAACGCGCGCGGCCACGGCCACGGCCACCGCCACGGCCACGGCCGGCAGCTCGGGTCCCGGGTCCCGGGCAGGGGAAGG GGAGAGGCGGCGAGCTCAGCAACCGGAACCGAGGGAAGATTTTGGCTCCGCGGGCTCGCCCTCCGCTCCCTCTGCCAGCGGCGCCAGACG CCGAGTGGGGCCAGGGACAGGGGAGGAGGACCCAGGACCCTGTGCCCGCGCCCCTGGAGCCGCTGGAGTTCGGACTTCTGCAACTGTTGG CACTTTGGGGGCTTGGCTTAGCGCTCTGCTGTTTACCCGTCTCTCCTCGCTGCCTCGGAACCAAAGCTCCCGGCCCCCTCCGCCCTCGCG CGCCCACCCACCGCCGCCGGGGAGCGGCCCGGCCCGCACTCAGCACCATGAGGGGACTTGGGACTTGCCTGGCGACTTTGGCCGGACTTT TGCTAACTGCGGCGGGCGAGACGTTCTCAGGTGGCTGCCTCTTTGATGAGCCGTATAGCACATGTGGATATAGTCAATCTGAAGGTGATG ACTTCAATTGGGAGCAAGTGAACACCTTGACTAAACCGACTTCTGATCCATGGATGCCATCAGGTTCTTTCATGCTGGTGAATGCCTCTG GGAGACCTGAGGGGCAGAGAGCCCACCTGCTCTTACCCCAACTTAAAGAAAATGACACCCACTGCATCGATTTTCACTATTTTGTGTCCA GCAAGAGTAATTCTCCTCCGGGGTTACTCAATGTCTACGTGAAGGTCAATAACGGGCCACTGGGGAATCCTATCTGGAATATATCTGGAG ACCCAACACGTACATGGAACAGGGCAGAACTGGCCATTAGTACTTTCTGGCCTAACTTTTATCAGGTGATTTTTGAAGTGATAACTTCTG GACATCAAGGCTATCTCGCTATCGATGAGGTGAAGGTGTTAGGACATCCATGTACCAGGACTCCTCACTTCCTGCGGATTCAGAATGTGG AAGTTAATGCTGGCCAGTTTGCTACCTTCCAGTGCAGTGCCATCGGCAGGACCGTGGCAGGAGACAGGCTCTGGTTACAGGGCATTGATG TGCGAGATGCTCCTCTGAAGGAAATCAAGGTGACCAGCTCCCGACGCTTCATTGCTTCATTTAATGTTGTGAATACCACCAAACGAGATG CTGGAAAGTACCGCTGCATGATTCGCACTGAAGGAGGTGTTGGAATATCAAACTATGCAGAGTTGGTAGTTAAAGAACCACCCGTTCCTA TTGCCCCACCTCAGCTCGCCTCTGTAGGAGCCACCTACCTGTGGATACAGCTCAACGCCAACTCCATCAATGGGGATGGGCCCATTGTGG CCCGAGAGGTGGAGTACTGCACGGCCAGTGGGAGCTGGAATGACCGGCAGCCAGTCGATTCCACGAGCTATAAAATTGGACACCTTGACC CAGATACAGAATATGAGATTAGTGTGCTCCTGACCAGGCCAGGGGAGGGTGGCACTGGCTCTCCTGGTCCAGCTCTCAGGACAAGAACAA AGTGTGCTGATCCCATGCGAGGCCCAAGAAAACTAGAAGTAGTGGAGGTCAAATCTCGGCAAATCACTATCCGCTGGGAGCCATTTGGAT ATAATGTAACTCGTTGCCACAGTTATAATCTCACTGTCCACTACTGTTACCAAGTTGGAGGACAAGAACAAGTGCGAGAAGAAGTAAGCT GGGATACAGAAAACTCACACCCTCAACACACGATCACTAACCTGTCACCATACACCAATGTCAGTGTGAAACTGATCCTCATGAACCCAG AGGGCCGGAAGGAAAGCCAAGAACTCATAGTGCAGACAGATGAAGACCTCCCAGGTGCTGTTCCCACTGAATCCATACAAGGAAGTACCT TTGAAGAGAAGATATTTCTTCAGTGGAGAGAACCAACTCAAACATATGGTGTAATCACTTTATATGAGATCACCTACAAAGCAGTCAGTT CCTTTGACCCAGAAATAGATTTATCCAATCAGAGTGGAAGAGTTTCAAAGCTGGGAAATGAAACCCATTTTCTGTTTTTTGGACTGTATC CGGGGACCACATACTCCTTTACCATCCGAGCTAGCACAGCTAAGGGTTTTGGGCCTCCAGCAACAAACCAGTTCACCACCAAAATATCAG CACCCTCTATGCCAGCTTATGAACTTGAGACACCTTTGAATCAAACTGACAATACCGTGACAGTCATGCTGAAACCTGCCCACAGCAGAG GAGCACCTGTCAGTGTCTATCAAATAGTTGTTGAGGAAGAACGTCCTCGAAGAACTAAAAAGACGACAGAAATCTTAAAGTGCTACCCAG TGCCAATTCACTTCCAGAATGCTTCTCTGCTGAACTCACAGTACTACTTTGCTGCAGAATTTCCTGCAGACAGCCTCCAAGCTGCGCAGC CTTTTACAATTGGTGATAATAAGACATATAATGGATACTGGAACACTCCCCTTCTCCCCTATAAAAGCTACAGAATTTATTTCCAAGCTG CTAGTAGAGCCAATGGGGAAACCAAAATAGACTGTGTCCAAGTGGCCACAAAAGGAGCTGCCACTCCGAAACCAGTCCCAGAACCCGAGA AACAGACAGACCATACAGTTAAAATTGCTGGAGTCATCGCGGGCATCTTGCTGTTCGTGATTATATTTCTTGGAGTTGTGTTGGTAATGA AGAAAAGCGACTGCATTTGCCTCCAGACTTGTCAGACACAGTGAGCCGCTCAAGCAAAATGGATCTGGCAGAATCCGCCAAGCGGCTGGG CCCAGGCTGTGGCATGATGGCCGGAGGCAAGAAGCACCTGGACTTCTAGGGATTCCTCCTTAGTCGCTGCATGCAGAATTCTATGACACT CTAATTATGATTGCTAATAGCTTATGTAAATATTTTTCTTAACAATTTGACCCTCCACTCCTTGAAAAACACAGGATTATAAAATGGTGC CGCCATTTCTCATTTTTTAACTTTTTACAGAACTAGCACAGCAGAAATACTTTTAAATTTTTCCTTCATGCTCTAGAGAAAATAATTTTA >In-frame_PTPRM_ENST00000400060_chr18_8143777_+_ELP4_ENST00000395934_chr11_31804941_+_2683nt ATGAGGGGACTTGGGACTTGCCTGGCGACTTTGGCCGGACTTTTGCTAACTGCGGCGGGCGAGACGTTCTCAGGTGGCTGCCTCTTTGAT GAGCCGTATAGCACATGTGGATATAGTCAATCTGAAGGTGATGACTTCAATTGGGAGCAAGTGAACACCTTGACTAAACCGACTTCTGAT CCATGGATGCCATCAGGTTCTTTCATGCTGGTGAATGCCTCTGGGAGACCTGAGGGGCAGAGAGCCCACCTGCTCTTACCCCAACTTAAA GAAAATGACACCCACTGCATCGATTTTCACTATTTTGTGTCCAGCAAGAGTAATTCTCCTCCGGGGTTACTCAATGTCTACGTGAAGGTC AATAACGGGCCACTGGGGAATCCTATCTGGAATATATCTGGAGACCCAACACGTACATGGAACAGGGCAGAACTGGCCATTAGTACTTTC TGGCCTAACTTTTATCAGGTGATTTTTGAAGTGATAACTTCTGGACATCAAGGCTATCTCGCTATCGATGAGGTGAAGGTGTTAGGACAT CCATGTACCAGGACTCCTCACTTCCTGCGGATTCAGAATGTGGAAGTTAATGCTGGCCAGTTTGCTACCTTCCAGTGCAGTGCCATCGGC AGGACCGTGGCAGGAGACAGGCTCTGGTTACAGGGCATTGATGTGCGAGATGCTCCTCTGAAGGAAATCAAGGTGACCAGCTCCCGACGC TTCATTGCTTCATTTAATGTTGTGAATACCACCAAACGAGATGCTGGAAAGTACCGCTGCATGATTCGCACTGAAGGAGGTGTTGGAATA TCAAACTATGCAGAGTTGGTAGTTAAAGAACCACCCGTTCCTATTGCCCCACCTCAGCTCGCCTCTGTAGGAGCCACCTACCTGTGGATA CAGCTCAACGCCAACTCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAGGTGGAGTACTGCACGGCCAGTGGGAGCTGGAATGACCGG CAGCCAGTCGATTCCACGAGCTATAAAATTGGACACCTTGACCCAGATACAGAATATGAGATTAGTGTGCTCCTGACCAGGCCAGGGGAG GGTGGCACTGGCTCTCCTGGTCCAGCTCTCAGGACAAGAACAAAGTGTGCTGATCCCATGCGAGGCCCAAGAAAACTAGAAGTAGTGGAG GTCAAATCTCGGCAAATCACTATCCGCTGGGAGCCATTTGGATATAATGTAACTCGTTGCCACAGTTATAATCTCACTGTCCACTACTGT TACCAAGTTGGAGGACAAGAACAAGTGCGAGAAGAAGTAAGCTGGGATACAGAAAACTCACACCCTCAACACACGATCACTAACCTGTCA CCATACACCAATGTCAGTGTGAAACTGATCCTCATGAACCCAGAGGGCCGGAAGGAAAGCCAAGAACTCATAGTGCAGACAGATGAAGAC CTCCCAGGTGCTGTTCCCACTGAATCCATACAAGGAAGTACCTTTGAAGAGAAGATATTTCTTCAGTGGAGAGAACCAACTCAAACATAT GGTGTAATCACTTTATATGAGATCACCTACAAAGCAGTCAGTTCCTTTGACCCAGAAATAGATTTATCCAATCAGAGTGGAAGAGTTTCA AAGCTGGGAAATGAAACCCATTTTCTGTTTTTTGGACTGTATCCGGGGACCACATACTCCTTTACCATCCGAGCTAGCACAGCTAAGGGT TTTGGGCCTCCAGCAACAAACCAGTTCACCACCAAAATATCAGCACCCTCTATGCCAGCTTATGAACTTGAGACACCTTTGAATCAAACT GACAATACCGTGACAGTCATGCTGAAACCTGCCCACAGCAGAGGAGCACCTGTCAGTGTCTATCAAATAGTTGTTGAGGAAGAACGTCCT CGAAGAACTAAAAAGACGACAGAAATCTTAAAGTGCTACCCAGTGCCAATTCACTTCCAGAATGCTTCTCTGCTGAACTCACAGTACTAC TTTGCTGCAGAATTTCCTGCAGACAGCCTCCAAGCTGCGCAGCCTTTTACAATTGGTGATAATAAGACATATAATGGATACTGGAACACT CCCCTTCTCCCCTATAAAAGCTACAGAATTTATTTCCAAGCTGCTAGTAGAGCCAATGGGGAAACCAAAATAGACTGTGTCCAAGTGGCC ACAAAAGGAGCTGCCACTCCGAAACCAGTCCCAGAACCCGAGAAACAGACAGACCATACAGTTAAAATTGCTGGAGTCATCGCGGGCATC TTGCTGTTCGTGATTATATTTCTTGGAGTTGTGTTGGTAATGAAGAAAAGCGACTGCATTTGCCTCCAGACTTGTCAGACACAGTGAGCC GCTCAAGCAAAATGGATCTGGCAGAATCCGCCAAGCGGCTGGGCCCAGGCTGTGGCATGATGGCCGGAGGCAAGAAGCACCTGGACTTCT AGGGATTCCTCCTTAGTCGCTGCATGCAGAATTCTATGACACTCTAATTATGATTGCTAATAGCTTATGTAAATATTTTTCTTAACAATT TGACCCTCCACTCCTTGAAAAACACAGGATTATAAAATGGTGCCGCCATTTCTCATTTTTTAACTTTTTACAGAACTAGCACAGCAGAAA >In-frame_PTPRM_ENST00000400053_chr18_8143777_+_ELP4_ENST00000395934_chr11_31804941_+_2922nt GTGCTGTGGCCCAATCCTGTGCGTGTCTCCTCTTCAGGCTCCTGCCGGAGCATGCTTCTCTAATCTTACCATTTATCACTGACCCTTCGG TGAAACTCTCTTCTGTTTAAATTTACCAGGGTACACTTTGTAATACTTGGGACCAAGAATTTGAAGATAGTAATCAGACAAATCAAACAA CTAGTAGTAGTGGAGAGACACGTAGCCCTACAGGAAGGGGTAGAATTATCATTAAAAACACAGACAAACCAGAGACTGCCTGAAAAAAAA AAAAAGATGAACTGGAAAGATTCAAAGTAGGCTCTATTGGAGGTGGCTGCCTCTTTGATGAGCCGTATAGCACATGTGGATATAGTCAAT CTGAAGGTGATGACTTCAATTGGGAGCAAGTGAACACCTTGACTAAACCGACTTCTGATCCATGGATGCCATCAGGTTCTTTCATGCTGG TGAATGCCTCTGGGAGACCTGAGGGGCAGAGAGCCCACCTGCTCTTACCCCAACTTAAAGAAAATGACACCCACTGCATCGATTTTCACT ATTTTGTGTCCAGCAAGAGTAATTCTCCTCCGGGGTTACTCAATGTCTACGTGAAGGTCAATAACGGGCCACTGGGGAATCCTATCTGGA ATATATCTGGAGACCCAACACGTACATGGAACAGGGCAGAACTGGCCATTAGTACTTTCTGGCCTAACTTTTATCAGGTGATTTTTGAAG TGATAACTTCTGGACATCAAGGCTATCTCGCTATCGATGAGGTGAAGGTGTTAGGACATCCATGTACCAGGACTCCTCACTTCCTGCGGA TTCAGAATGTGGAAGTTAATGCTGGCCAGTTTGCTACCTTCCAGTGCAGTGCCATCGGCAGGACCGTGGCAGGAGACAGGCTCTGGTTAC AGGGCATTGATGTGCGAGATGCTCCTCTGAAGGAAATCAAGGTGACCAGCTCCCGACGCTTCATTGCTTCATTTAATGTTGTGAATACCA CCAAACGAGATGCTGGAAAGTACCGCTGCATGATTCGCACTGAAGGAGGTGTTGGAATATCAAACTATGCAGAGTTGGTAGTTAAAGAAC CACCCGTTCCTATTGCCCCACCTCAGCTCGCCTCTGTAGGAGCCACCTACCTGTGGATACAGCTCAACGCCAACTCCATCAATGGGGATG GGCCCATTGTGGCCCGAGAGGTGGAGTACTGCACGGCCAGTGGGAGCTGGAATGACCGGCAGCCAGTCGATTCCACGAGCTATAAAATTG GACACCTTGACCCAGATACAGAATATGAGATTAGTGTGCTCCTGACCAGGCCAGGGGAGGGTGGCACTGGCTCTCCTGGTCCAGCTCTCA GGACAAGAACAAAGTGTGCTGATCCCATGCGAGGCCCAAGAAAACTAGAAGTAGTGGAGGTCAAATCTCGGCAAATCACTATCCGCTGGG AGCCATTTGGATATAATGTAACTCGTTGCCACAGTTATAATCTCACTGTCCACTACTGTTACCAAGTTGGAGGACAAGAACAAGTGCGAG AAGAAGTAAGCTGGGATACAGAAAACTCACACCCTCAACACACGATCACTAACCTGTCACCATACACCAATGTCAGTGTGAAACTGATCC TCATGAACCCAGAGGGCCGGAAGGAAAGCCAAGAACTCATAGTGCAGACAGATGAAGACCTCCCAGGTGCTGTTCCCACTGAATCCATAC AAGGAAGTACCTTTGAAGAGAAGATATTTCTTCAGTGGAGAGAACCAACTCAAACATATGGTGTAATCACTTTATATGAGATCACCTACA AAGCAGTCAGTTCCTTTGACCCAGAAATAGATTTATCCAATCAGAGTGGAAGAGTTTCAAAGCTGGGAAATGAAACCCATTTTCTGTTTT TTGGACTGTATCCGGGGACCACATACTCCTTTACCATCCGAGCTAGCACAGCTAAGGGTTTTGGGCCTCCAGCAACAAACCAGTTCACCA CCAAAATATCAGCACCCTCTATGCCAGCTTATGAACTTGAGACACCTTTGAATCAAACTGACAATACCGTGACAGTCATGCTGAAACCTG CCCACAGCAGAGGAGCACCTGTCAGTGTCTATCAAATAGTTGTTGAGGAAGAACGTCCTCGAAGAACTAAAAAGACGACAGAAATCTTAA AGTGCTACCCAGTGCCAATTCACTTCCAGAATGCTTCTCTGCTGAACTCACAGTACTACTTTGCTGCAGAATTTCCTGCAGACAGCCTCC AAGCTGCGCAGCCTTTTACAATTGGTGATAATAAGACATATAATGGATACTGGAACACTCCCCTTCTCCCCTATAAAAGCTACAGAATTT ATTTCCAAGCTGCTAGTAGAGCCAATGGGGAAACCAAAATAGACTGTGTCCAAGTGGCCACAAAAGGAGCTGCCACTCCGAAACCAGTCC CAGAACCCGAGAAACAGACAGACCATACAGTTAAAATTGCTGGAGTCATCGCGGGCATCTTGCTGTTCGTGATTATATTTCTTGGAGTTG TGTTGGTAATGAAGAAAAGCGACTGCATTTGCCTCCAGACTTGTCAGACACAGTGAGCCGCTCAAGCAAAATGGATCTGGCAGAATCCGC CAAGCGGCTGGGCCCAGGCTGTGGCATGATGGCCGGAGGCAAGAAGCACCTGGACTTCTAGGGATTCCTCCTTAGTCGCTGCATGCAGAA TTCTATGACACTCTAATTATGATTGCTAATAGCTTATGTAAATATTTTTCTTAACAATTTGACCCTCCACTCCTTGAAAAACACAGGATT ATAAAATGGTGCCGCCATTTCTCATTTTTTAACTTTTTACAGAACTAGCACAGCAGAAATACTTTTAAATTTTTCCTTCATGCTCTAGAG >In-frame_PTPRM_ENST00000444013_chr18_8143777_+_ELP4_ENST00000395934_chr11_31804941_+_2044nt ATGGGAACCCTCTCCCTCCATCCTGGCATTGATGTGCGAGATGCTCCTCTGAAGGAAATCAAGGTGACCAGCTCCCGACGCTTCATTGCT TCATTTAATGTTGTGAATACCACCAAACGAGATGCTGGAAAGTACCGCTGCATGATTCGCACTGAAGGAGGTGTTGGAATATCAAACTAT GCAGAGTTGGTAGTTAAAGAACCACCCGTTCCTATTGCCCCACCTCAGCTCGCCTCTGTAGGAGCCACCTACCTGTGGATACAGCTCAAC GCCAACTCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAGGTGGAGTACTGCACGGCCAGTGGGAGCTGGAATGACCGGCAGCCAGTC GATTCCACGAGCTATAAAATTGGACACCTTGACCCAGATACAGAATATGAGATTAGTGTGCTCCTGACCAGGCCAGGGGAGGGTGGCACT GGCTCTCCTGGTCCAGCTCTCAGGACAAGAACAAAGTGTGCTGATCCCATGCGAGGCCCAAGAAAACTAGAAGTAGTGGAGGTCAAATCT CGGCAAATCACTATCCGCTGGGAGCCATTTGGATATAATGTAACTCGTTGCCACAGTTATAATCTCACTGTCCACTACTGTTACCAAGTT GGAGGACAAGAACAAGTGCGAGAAGAAGTAAGCTGGGATACAGAAAACTCACACCCTCAACACACGATCACTAACCTGTCACCATACACC AATGTCAGTGTGAAACTGATCCTCATGAACCCAGAGGGCCGGAAGGAAAGCCAAGAACTCATAGTGCAGACAGATGAAGACCTCCCAGGT GCTGTTCCCACTGAATCCATACAAGGAAGTACCTTTGAAGAGAAGATATTTCTTCAGTGGAGAGAACCAACTCAAACATATGGTGTAATC ACTTTATATGAGATCACCTACAAAGCAGTCAGTTCCTTTGACCCAGAAATAGATTTATCCAATCAGAGTGGAAGAGTTTCAAAGCTGGGA AATGAAACCCATTTTCTGTTTTTTGGACTGTATCCGGGGACCACATACTCCTTTACCATCCGAGCTAGCACAGCTAAGGGTTTTGGGCCT CCAGCAACAAACCAGTTCACCACCAAAATATCAGCACCCTCTATGCCAGCTTATGAACTTGAGACACCTTTGAATCAAACTGACAATACC GTGACAGTCATGCTGAAACCTGCCCACAGCAGAGGAGCACCTGTCAGTGTCTATCAAATAGTTGTTGAGGAAGAACGTCCTCGAAGAACT AAAAAGACGACAGAAATCTTAAAGTGCTACCCAGTGCCAATTCACTTCCAGAATGCTTCTCTGCTGAACTCACAGTACTACTTTGCTGCA GAATTTCCTGCAGACAGCCTCCAAGCTGCGCAGCCTTTTACAATTGGTGATAATAAGACATATAATGGATACTGGAACACTCCCCTTCTC CCCTATAAAAGCTACAGAATTTATTTCCAAGCTGCTAGTAGAGCCAATGGGGAAACCAAAATAGACTGTGTCCAAGTGGCCACAAAAGGA GCTGCCACTCCGAAACCAGTCCCAGAACCCGAGAAACAGACAGACCATACAGTTAAAATTGCTGGAGTCATCGCGGGCATCTTGCTGTTC GTGATTATATTTCTTGGAGTTGTGTTGGTAATGAAGAAAAGCGACTGCATTTGCCTCCAGACTTGTCAGACACAGTGAGCCGCTCAAGCA AAATGGATCTGGCAGAATCCGCCAAGCGGCTGGGCCCAGGCTGTGGCATGATGGCCGGAGGCAAGAAGCACCTGGACTTCTAGGGATTCC TCCTTAGTCGCTGCATGCAGAATTCTATGACACTCTAATTATGATTGCTAATAGCTTATGTAAATATTTTTCTTAACAATTTGACCCTCC ACTCCTTGAAAAACACAGGATTATAAAATGGTGCCGCCATTTCTCATTTTTTAACTTTTTACAGAACTAGCACAGCAGAAATACTTTTAA |
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FusionGenePPI for PTPRM_ELP4 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
PTPRM | GNB2L1, CTNND1, DTNBP1, LMTK2, EHD4, CDC42BPA, NHSL1, TRIM25 | ELP4 | IKBKAP, ELP2, ELP3, HINFP, PPP1CC, CBX6, MMS19, SRP68, FAM96B, CIAO1, SHMT2, ELP6, PIPOX, SF3B3, ID2, CDH1, EGFR |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for PTPRM_ELP4 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PTPRM_ELP4 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |