FusionGDB Logo

Home

Download

Statistics

Examples

Help

Contact

Center for Computational Systems Medicine
leaf

FusionGeneSummary

leaf

FusionProtFeature

leaf

FusionGeneSequence

leaf

FusionGenePPI

leaf

RelatedDrugs

leaf

RelatedDiseases

Fusion gene ID: 29345

FusionGeneSummary for PTK2_CLTC

check button Fusion gene summary
Fusion gene informationFusion gene name: PTK2_CLTC
Fusion gene ID: 29345
HgeneTgene
Gene symbol

PTK2

CLTC

Gene ID

5747

1213

Gene nameprotein tyrosine kinase 2clathrin heavy chain
SynonymsFADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAKCHC|CHC17|CLH-17|CLTCL2|Hc|MRD56
Cytomap

8q24.3

17q23.1

Type of geneprotein-codingprotein-coding
Descriptionfocal adhesion kinase 1FADK 1FAK-related non-kinase polypeptidePTK2 protein tyrosine kinase 2focal adhesion kinase isoform FAK-Del33focal adhesion kinase-related nonkinaseprotein phosphatase 1 regulatory subunit 71clathrin heavy chain 1clathrin heavy chain on chromosome 17clathrin, heavy polypeptide (Hc)clathrin, heavy polypeptide-like 2
Modification date2018052720180523
UniProtAcc

Q05397

Q00610

Ensembl transtripts involved in fusion geneENST00000522684, ENST00000535192, 
ENST00000519465, ENST00000517887, 
ENST00000521059, ENST00000395218, 
ENST00000538769, ENST00000340930, 
ENST00000519419, ENST00000430260, 
ENST00000519881, ENST00000520892, 
ENST00000519635, ENST00000517712, 
ENST00000522950, ENST00000520151, 
ENST00000393043, ENST00000269122, 
ENST00000579456, ENST00000579815, 
Fusion gene scores* DoF score23 X 15 X 10=34504 X 4 X 3=48
# samples 254
** MAII scorelog2(25/3450*10)=-3.78659636189081
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(4/48*10)=-0.263034405833794
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: PTK2 [Title/Abstract] AND CLTC [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgenePTK2

GO:0007179

transforming growth factor beta receptor signaling pathway

24036928

HgenePTK2

GO:0007229

integrin-mediated signaling pathway

24036928

HgenePTK2

GO:0018108

peptidyl-tyrosine phosphorylation

10655584|11331870

HgenePTK2

GO:0022408

negative regulation of cell-cell adhesion

21703394

HgenePTK2

GO:0030335

positive regulation of cell migration

11331870|21703394

HgenePTK2

GO:0033628

regulation of cell adhesion mediated by integrin

10655584

HgenePTK2

GO:0046777

protein autophosphorylation

10655584|11331870

HgenePTK2

GO:0048013

ephrin receptor signaling pathway

10655584

HgenePTK2

GO:0060396

growth hormone receptor signaling pathway

10925297

TgeneCLTC

GO:1900126

negative regulation of hyaluronan biosynthetic process

24251095


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS3.1AW378979PTK2chr8

141669344

-CLTCchr17

57710101

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-intronENST00000522684ENST00000393043PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000522684ENST00000269122PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000522684ENST00000579456PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000522684ENST00000579815PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000535192ENST00000393043PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000535192ENST00000269122PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000535192ENST00000579456PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000535192ENST00000579815PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000519465ENST00000393043PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000519465ENST00000269122PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000519465ENST00000579456PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000519465ENST00000579815PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000517887ENST00000393043PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000517887ENST00000269122PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000517887ENST00000579456PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000517887ENST00000579815PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000521059ENST00000393043PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000521059ENST00000269122PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000521059ENST00000579456PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000521059ENST00000579815PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000395218ENST00000393043PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000395218ENST00000269122PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000395218ENST00000579456PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000395218ENST00000579815PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000538769ENST00000393043PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000538769ENST00000269122PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000538769ENST00000579456PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000538769ENST00000579815PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000340930ENST00000393043PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000340930ENST00000269122PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000340930ENST00000579456PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000340930ENST00000579815PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000519419ENST00000393043PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000519419ENST00000269122PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000519419ENST00000579456PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000519419ENST00000579815PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000430260ENST00000393043PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000430260ENST00000269122PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000430260ENST00000579456PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000430260ENST00000579815PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000519881ENST00000393043PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000519881ENST00000269122PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000519881ENST00000579456PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000519881ENST00000579815PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000520892ENST00000393043PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000520892ENST00000269122PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000520892ENST00000579456PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000520892ENST00000579815PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000519635ENST00000393043PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000519635ENST00000269122PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000519635ENST00000579456PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000519635ENST00000579815PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000517712ENST00000393043PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000517712ENST00000269122PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000517712ENST00000579456PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000517712ENST00000579815PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000522950ENST00000393043PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000522950ENST00000269122PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000522950ENST00000579456PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000522950ENST00000579815PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000520151ENST00000393043PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000520151ENST00000269122PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000520151ENST00000579456PTK2chr8

141669344

-CLTCchr17

57710101

-
intron-intronENST00000520151ENST00000579815PTK2chr8

141669344

-CLTCchr17

57710101

-

Top

FusionProtFeatures for PTK2_CLTC


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
PTK2

Q05397

CLTC

Q00610

Non-receptor protein-tyrosine kinase that plays anessential role in regulating cell migration, adhesion, spreading,reorganization of the actin cytoskeleton, formation anddisassembly of focal adhesions and cell protrusions, cell cycleprogression, cell proliferation and apoptosis. Required for earlyembryonic development and placenta development. Required forembryonic angiogenesis, normal cardiomyocyte migration andproliferation, and normal heart development. Regulates axon growthand neuronal cell migration, axon branching and synapse formation;required for normal development of the nervous system. Plays arole in osteogenesis and differentiation of osteoblasts. Functionsin integrin signal transduction, but also in signaling downstreamof numerous growth factor receptors, G-protein coupled receptors(GPCR), EPHA2, netrin receptors and LDL receptors. Formsmultisubunit signaling complexes with SRC and SRC family membersupon activation; this leads to the phosphorylation of additionaltyrosine residues, creating binding sites for scaffold proteins,effectors and substrates. Regulates numerous signaling pathways.Promotes activation of phosphatidylinositol 3-kinase and the AKT1signaling cascade. Promotes activation of MAPK1/ERK2, MAPK3/ERK1and the MAP kinase signaling cascade. Promotes localized andtransient activation of guanine nucleotide exchange factors (GEFs)and GTPase-activating proteins (GAPs), and thereby modulates theactivity of Rho family GTPases. Signaling via CAS family membersmediates activation of RAC1. Recruits the ubiquitin ligase MDM2 toP53/TP53 in the nucleus, and thereby regulates P53/TP53 activity,P53/TP53 ubiquitination and proteasomal degradation.Phosphorylates SRC; this increases SRC kinase activity.Phosphorylates ACTN1, ARHGEF7, GRB7, RET and WASL. Promotesphosphorylation of PXN and STAT1; most likely PXN and STAT1 arephosphorylated by a SRC family kinase that is recruited toautophosphorylated PTK2/FAK1, rather than by PTK2/FAK1 itself.Promotes phosphorylation of BCAR1; GIT2 and SHC1; this requiresboth SRC and PTK2/FAK1. Promotes phosphorylation of BMX andPIK3R1. Isoform 6 (FRNK) does not contain a kinase domain andinhibits PTK2/FAK1 phosphorylation and signaling. Its enhancedexpression can attenuate the nuclear accumulation of LPXN andlimit its ability to enhance serum response factor (SRF)-dependentgene transcription. {ECO:0000269|PubMed:10655584,ECO:0000269|PubMed:11331870, ECO:0000269|PubMed:11980671,ECO:0000269|PubMed:15166238, ECO:0000269|PubMed:15561106,ECO:0000269|PubMed:15895076, ECO:0000269|PubMed:16919435,ECO:0000269|PubMed:16927379, ECO:0000269|PubMed:17395594,ECO:0000269|PubMed:17431114, ECO:0000269|PubMed:17968709,ECO:0000269|PubMed:18006843, ECO:0000269|PubMed:18206965,ECO:0000269|PubMed:18256281, ECO:0000269|PubMed:18292575,ECO:0000269|PubMed:18497331, ECO:0000269|PubMed:18677107,ECO:0000269|PubMed:19138410, ECO:0000269|PubMed:19147981,ECO:0000269|PubMed:19224453, ECO:0000269|PubMed:20332118,ECO:0000269|PubMed:20495381, ECO:0000269|PubMed:21454698}. Clathrin is the major protein of the polyhedral coat ofcoated pits and vesicles. Two different adapter protein complexeslink the clathrin lattice either to the plasma membrane or to thetrans-Golgi network. Acts as component of the TACC3/ch-TOG/clathrin complex proposed to contribute to stabilization ofkinetochore fibers of the mitotic spindle by acting as inter-microtubule bridge (PubMed:15858577, PubMed:16968737,PubMed:21297582). The TACC3/ch-TOG/clathrin complex is requiredfor the maintenance of kinetochore fiber tension(PubMed:23532825). Plays a role in early autophagosome formation(PubMed:20639872). {ECO:0000269|PubMed:15858577,ECO:0000269|PubMed:16968737, ECO:0000269|PubMed:20639872,ECO:0000269|PubMed:21297582, ECO:0000269|PubMed:23532825}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


Top

FusionGeneSequence for PTK2_CLTC


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

Top

FusionGenePPI for PTK2_CLTC


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


Top

RelatedDrugs for PTK2_CLTC


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

RelatedDiseases for PTK2_CLTC


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgenePTK2C0007137Squamous cell carcinoma2CTD_human
HgenePTK2C0027626Neoplasm Invasiveness2CTD_human
HgenePTK2C0003873Rheumatoid Arthritis1CTD_human
HgenePTK2C0007621Neoplastic Cell Transformation1CTD_human
HgenePTK2C0017636Glioblastoma1CTD_human
HgenePTK2C0024668Mammary Neoplasms, Experimental1CTD_human
HgenePTK2C0026640Mouth Neoplasms1CTD_human
HgenePTK2C2239176Liver carcinoma1CTD_human
TgeneCLTCC0079744Diffuse Large B-Cell Lymphoma1CTD_human