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Fusion gene ID: 29159 |
FusionGeneSummary for PSMC5_PSD3 |
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Fusion gene information | Fusion gene name: PSMC5_PSD3 | Fusion gene ID: 29159 | Hgene | Tgene | Gene symbol | PSMC5 | PSD3 | Gene ID | 5705 | 23362 |
Gene name | proteasome 26S subunit, ATPase 5 | pleckstrin and Sec7 domain containing 3 | |
Synonyms | S8|SUG-1|SUG1|TBP10|TRIP1|p45|p45/SUG | EFA6D|EFA6R|HCA67 | |
Cytomap | 17q23.3 | 8p22 | |
Type of gene | protein-coding | protein-coding | |
Description | 26S proteasome regulatory subunit 826S protease regulatory subunit 826S proteasome AAA-ATPase subunit RPT6MSUG1 proteinTat-binding protein homolog 10proteasome (prosome, macropain) 26S subunit, ATPase, 5proteasome 26S ATPase subunit 5proteasome sub | PH and SEC7 domain-containing protein 3ADP-ribosylation factor guanine nucleotide factor 6epididymis tissue protein Li 20mPexchange factor for ADP-ribosylation factor guanine nucleotide factor 6exchange factor for ADP-ribosylation factor guanine nucle | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | P62195 | Q9NYI0 | |
Ensembl transtripts involved in fusion gene | ENST00000310144, ENST00000582420, ENST00000580864, ENST00000375812, ENST00000581882, | ENST00000327040, ENST00000440756, ENST00000286485, ENST00000428502, ENST00000523619, ENST00000520789, | |
Fusion gene scores | * DoF score | 7 X 8 X 1=56 | 4 X 4 X 2=32 |
# samples | 8 | 4 | |
** MAII score | log2(8/56*10)=0.514573172829758 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(4/32*10)=0.321928094887362 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: PSMC5 [Title/Abstract] AND PSD3 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | PSMC5 | GO:0006357 | regulation of transcription by RNA polymerase II | 7870181 |
Hgene | PSMC5 | GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | 12110588 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | CK725100 | PSMC5 | chr17 | 61909127 | - | PSD3 | chr8 | 18725438 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000310144 | ENST00000327040 | PSMC5 | chr17 | 61909127 | - | PSD3 | chr8 | 18725438 | + |
Frame-shift | ENST00000310144 | ENST00000440756 | PSMC5 | chr17 | 61909127 | - | PSD3 | chr8 | 18725438 | + |
5CDS-intron | ENST00000310144 | ENST00000286485 | PSMC5 | chr17 | 61909127 | - | PSD3 | chr8 | 18725438 | + |
5CDS-intron | ENST00000310144 | ENST00000428502 | PSMC5 | chr17 | 61909127 | - | PSD3 | chr8 | 18725438 | + |
5CDS-intron | ENST00000310144 | ENST00000523619 | PSMC5 | chr17 | 61909127 | - | PSD3 | chr8 | 18725438 | + |
5CDS-intron | ENST00000310144 | ENST00000520789 | PSMC5 | chr17 | 61909127 | - | PSD3 | chr8 | 18725438 | + |
intron-3CDS | ENST00000582420 | ENST00000327040 | PSMC5 | chr17 | 61909127 | - | PSD3 | chr8 | 18725438 | + |
intron-3CDS | ENST00000582420 | ENST00000440756 | PSMC5 | chr17 | 61909127 | - | PSD3 | chr8 | 18725438 | + |
intron-intron | ENST00000582420 | ENST00000286485 | PSMC5 | chr17 | 61909127 | - | PSD3 | chr8 | 18725438 | + |
intron-intron | ENST00000582420 | ENST00000428502 | PSMC5 | chr17 | 61909127 | - | PSD3 | chr8 | 18725438 | + |
intron-intron | ENST00000582420 | ENST00000523619 | PSMC5 | chr17 | 61909127 | - | PSD3 | chr8 | 18725438 | + |
intron-intron | ENST00000582420 | ENST00000520789 | PSMC5 | chr17 | 61909127 | - | PSD3 | chr8 | 18725438 | + |
Frame-shift | ENST00000580864 | ENST00000327040 | PSMC5 | chr17 | 61909127 | - | PSD3 | chr8 | 18725438 | + |
Frame-shift | ENST00000580864 | ENST00000440756 | PSMC5 | chr17 | 61909127 | - | PSD3 | chr8 | 18725438 | + |
5CDS-intron | ENST00000580864 | ENST00000286485 | PSMC5 | chr17 | 61909127 | - | PSD3 | chr8 | 18725438 | + |
5CDS-intron | ENST00000580864 | ENST00000428502 | PSMC5 | chr17 | 61909127 | - | PSD3 | chr8 | 18725438 | + |
5CDS-intron | ENST00000580864 | ENST00000523619 | PSMC5 | chr17 | 61909127 | - | PSD3 | chr8 | 18725438 | + |
5CDS-intron | ENST00000580864 | ENST00000520789 | PSMC5 | chr17 | 61909127 | - | PSD3 | chr8 | 18725438 | + |
Frame-shift | ENST00000375812 | ENST00000327040 | PSMC5 | chr17 | 61909127 | - | PSD3 | chr8 | 18725438 | + |
Frame-shift | ENST00000375812 | ENST00000440756 | PSMC5 | chr17 | 61909127 | - | PSD3 | chr8 | 18725438 | + |
5CDS-intron | ENST00000375812 | ENST00000286485 | PSMC5 | chr17 | 61909127 | - | PSD3 | chr8 | 18725438 | + |
5CDS-intron | ENST00000375812 | ENST00000428502 | PSMC5 | chr17 | 61909127 | - | PSD3 | chr8 | 18725438 | + |
5CDS-intron | ENST00000375812 | ENST00000523619 | PSMC5 | chr17 | 61909127 | - | PSD3 | chr8 | 18725438 | + |
5CDS-intron | ENST00000375812 | ENST00000520789 | PSMC5 | chr17 | 61909127 | - | PSD3 | chr8 | 18725438 | + |
Frame-shift | ENST00000581882 | ENST00000327040 | PSMC5 | chr17 | 61909127 | - | PSD3 | chr8 | 18725438 | + |
Frame-shift | ENST00000581882 | ENST00000440756 | PSMC5 | chr17 | 61909127 | - | PSD3 | chr8 | 18725438 | + |
5CDS-intron | ENST00000581882 | ENST00000286485 | PSMC5 | chr17 | 61909127 | - | PSD3 | chr8 | 18725438 | + |
5CDS-intron | ENST00000581882 | ENST00000428502 | PSMC5 | chr17 | 61909127 | - | PSD3 | chr8 | 18725438 | + |
5CDS-intron | ENST00000581882 | ENST00000523619 | PSMC5 | chr17 | 61909127 | - | PSD3 | chr8 | 18725438 | + |
5CDS-intron | ENST00000581882 | ENST00000520789 | PSMC5 | chr17 | 61909127 | - | PSD3 | chr8 | 18725438 | + |
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FusionProtFeatures for PSMC5_PSD3 |
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Hgene | Tgene |
PSMC5 | PSD3 |
Component of the 26S proteasome, a multiprotein complexinvolved in the ATP-dependent degradation of ubiquitinatedproteins. This complex plays a key role in the maintenance ofprotein homeostasis by removing misfolded or damaged proteins,which could impair cellular functions, and by removing proteinswhose functions are no longer required. Therefore, the proteasomeparticipates in numerous cellular processes, including cell cycleprogression, apoptosis, or DNA damage repair. PSMC5 belongs to theheterohexameric ring of AAA (ATPases associated with diversecellular activities) proteins that unfolds ubiquitinated targetproteins that are concurrently translocated into a proteolyticchamber and degraded into peptides. {ECO:0000269|PubMed:1317798}. | Guanine nucleotide exchange factor for ARF6.{ECO:0000250}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for PSMC5_PSD3 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for PSMC5_PSD3 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for PSMC5_PSD3 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PSMC5_PSD3 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | PSMC5 | C0019693 | HIV Infections | 1 | CTD_human |
Hgene | PSMC5 | C0038325 | Stevens-Johnson Syndrome | 1 | CTD_human |
Tgene | PSD3 | C0017638 | Glioma | 1 | CTD_human |
Tgene | PSD3 | C0036341 | Schizophrenia | 1 | PSYGENET |
Tgene | PSD3 | C0236733 | Amphetamine-Related Disorders | 1 | CTD_human |