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Fusion gene ID: 29113 |
FusionGeneSummary for PSMA5_USF1 |
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Fusion gene information | Fusion gene name: PSMA5_USF1 | Fusion gene ID: 29113 | Hgene | Tgene | Gene symbol | PSMA5 | USF1 | Gene ID | 5686 | 7391 |
Gene name | proteasome subunit alpha 5 | upstream transcription factor 1 | |
Synonyms | PSC5|ZETA | FCHL|FCHL1|HYPLIP1|MLTF|MLTFI|UEF|bHLHb11 | |
Cytomap | 1p13.3 | 1q23.3 | |
Type of gene | protein-coding | protein-coding | |
Description | proteasome subunit alpha type-5epididymis tissue sperm binding protein Li 11nmacropain subunit zetamacropain zeta chainmulticatalytic endopeptidase complex zeta chainproteasome (prosome, macropain) subunit, alpha type, 5proteasome alpha 5 subunitpr | upstream stimulatory factor 1class B basic helix-loop-helix protein 11major late transcription factor 1 | |
Modification date | 20180523 | 20180522 | |
UniProtAcc | P28066 | P22415 | |
Ensembl transtripts involved in fusion gene | ENST00000271308, ENST00000538610, ENST00000490870, | ENST00000368020, ENST00000368021, ENST00000435396, ENST00000368019, | |
Fusion gene scores | * DoF score | 2 X 2 X 2=8 | 4 X 6 X 2=48 |
# samples | 2 | 6 | |
** MAII score | log2(2/8*10)=1.32192809488736 | log2(6/48*10)=0.321928094887362 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: PSMA5 [Title/Abstract] AND USF1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | USF1 | GO:0006366 | transcription by RNA polymerase II | 2249772 |
Tgene | USF1 | GO:0019086 | late viral transcription | 2249772 |
Tgene | USF1 | GO:0032869 | cellular response to insulin stimulus | 19303849 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | BP284679 | PSMA5 | chr1 | 109954767 | - | USF1 | chr1 | 161015686 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-intron | ENST00000271308 | ENST00000368020 | PSMA5 | chr1 | 109954767 | - | USF1 | chr1 | 161015686 | - |
intron-5UTR | ENST00000271308 | ENST00000368021 | PSMA5 | chr1 | 109954767 | - | USF1 | chr1 | 161015686 | - |
intron-5UTR | ENST00000271308 | ENST00000435396 | PSMA5 | chr1 | 109954767 | - | USF1 | chr1 | 161015686 | - |
intron-intron | ENST00000271308 | ENST00000368019 | PSMA5 | chr1 | 109954767 | - | USF1 | chr1 | 161015686 | - |
intron-intron | ENST00000538610 | ENST00000368020 | PSMA5 | chr1 | 109954767 | - | USF1 | chr1 | 161015686 | - |
intron-5UTR | ENST00000538610 | ENST00000368021 | PSMA5 | chr1 | 109954767 | - | USF1 | chr1 | 161015686 | - |
intron-5UTR | ENST00000538610 | ENST00000435396 | PSMA5 | chr1 | 109954767 | - | USF1 | chr1 | 161015686 | - |
intron-intron | ENST00000538610 | ENST00000368019 | PSMA5 | chr1 | 109954767 | - | USF1 | chr1 | 161015686 | - |
intron-intron | ENST00000490870 | ENST00000368020 | PSMA5 | chr1 | 109954767 | - | USF1 | chr1 | 161015686 | - |
intron-5UTR | ENST00000490870 | ENST00000368021 | PSMA5 | chr1 | 109954767 | - | USF1 | chr1 | 161015686 | - |
intron-5UTR | ENST00000490870 | ENST00000435396 | PSMA5 | chr1 | 109954767 | - | USF1 | chr1 | 161015686 | - |
intron-intron | ENST00000490870 | ENST00000368019 | PSMA5 | chr1 | 109954767 | - | USF1 | chr1 | 161015686 | - |
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FusionProtFeatures for PSMA5_USF1 |
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Hgene | Tgene |
PSMA5 | USF1 |
Component of the 20S core proteasome complex involved inthe proteolytic degradation of most intracellular proteins. Thiscomplex plays numerous essential roles within the cell byassociating with different regulatory particles. Associated withtwo 19S regulatory particles, forms the 26S proteasome and thusparticipates in the ATP-dependent degradation of ubiquitinatedproteins. The 26S proteasome plays a key role in the maintenanceof protein homeostasis by removing misfolded or damaged proteinsthat could impair cellular functions, and by removing proteinswhose functions are no longer required. Associated with the PA200or PA28, the 20S proteasome mediates ubiquitin-independent proteindegradation. This type of proteolysis is required in severalpathways including spermatogenesis (20S-PA200 complex) orgeneration of a subset of MHC class I-presented antigenic peptides(20S-PA28 complex). {ECO:0000269|PubMed:15244466,ECO:0000269|PubMed:27176742, ECO:0000269|PubMed:8610016}. | Transcription factor that binds to a symmetrical DNAsequence (E-boxes) (5'-CACGTG-3') that is found in a variety ofviral and cellular promoters. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for PSMA5_USF1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for PSMA5_USF1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for PSMA5_USF1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PSMA5_USF1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | PSMA5 | C0015695 | Fatty Liver | 1 | CTD_human |
Hgene | PSMA5 | C0019693 | HIV Infections | 1 | CTD_human |
Hgene | PSMA5 | C0029456 | Osteoporosis | 1 | CTD_human |