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Fusion gene ID: 29071 |
FusionGeneSummary for PSD3_FGL1 |
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Fusion gene information | Fusion gene name: PSD3_FGL1 | Fusion gene ID: 29071 | Hgene | Tgene | Gene symbol | PSD3 | FGL1 | Gene ID | 23362 | 2267 |
Gene name | pleckstrin and Sec7 domain containing 3 | fibrinogen like 1 | |
Synonyms | EFA6D|EFA6R|HCA67 | HFREP1|HP-041|LFIRE-1|LFIRE1 | |
Cytomap | 8p22 | 8p22 | |
Type of gene | protein-coding | protein-coding | |
Description | PH and SEC7 domain-containing protein 3ADP-ribosylation factor guanine nucleotide factor 6epididymis tissue protein Li 20mPexchange factor for ADP-ribosylation factor guanine nucleotide factor 6exchange factor for ADP-ribosylation factor guanine nucle | fibrinogen-like protein 1hepassocinhepatocellular carcinoma-related sequencehepatocyte-derived fibrinogen-related protein 1liver fibrinogen-related protein 1 | |
Modification date | 20180523 | 20180519 | |
UniProtAcc | Q9NYI0 | Q08830 | |
Ensembl transtripts involved in fusion gene | ENST00000327040, ENST00000440756, ENST00000286485, ENST00000428502, ENST00000523619, ENST00000520789, | ENST00000398056, ENST00000522444, ENST00000398054, ENST00000381840, ENST00000381841, ENST00000427924, ENST00000518650, | |
Fusion gene scores | * DoF score | 8 X 7 X 6=336 | 4 X 3 X 5=60 |
# samples | 8 | 7 | |
** MAII score | log2(8/336*10)=-2.0703893278914 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(7/60*10)=0.222392421336448 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: PSD3 [Title/Abstract] AND FGL1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | SARC | TCGA-DX-A23T-01A | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-5UTR | ENST00000327040 | ENST00000398056 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000327040 | ENST00000522444 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000327040 | ENST00000398054 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000327040 | ENST00000381840 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000327040 | ENST00000381841 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000327040 | ENST00000427924 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000327040 | ENST00000518650 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000440756 | ENST00000398056 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000440756 | ENST00000522444 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000440756 | ENST00000398054 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000440756 | ENST00000381840 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000440756 | ENST00000381841 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000440756 | ENST00000427924 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000440756 | ENST00000518650 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000286485 | ENST00000398056 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000286485 | ENST00000522444 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000286485 | ENST00000398054 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000286485 | ENST00000381840 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000286485 | ENST00000381841 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000286485 | ENST00000427924 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000286485 | ENST00000518650 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000428502 | ENST00000398056 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000428502 | ENST00000522444 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000428502 | ENST00000398054 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000428502 | ENST00000381840 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000428502 | ENST00000381841 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000428502 | ENST00000427924 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000428502 | ENST00000518650 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000523619 | ENST00000398056 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000523619 | ENST00000522444 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000523619 | ENST00000398054 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000523619 | ENST00000381840 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000523619 | ENST00000381841 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000523619 | ENST00000427924 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000523619 | ENST00000518650 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000520789 | ENST00000398056 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000520789 | ENST00000522444 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000520789 | ENST00000398054 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000520789 | ENST00000381840 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000520789 | ENST00000381841 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000520789 | ENST00000427924 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
intron-5UTR | ENST00000520789 | ENST00000518650 | PSD3 | chr8 | 18711608 | - | FGL1 | chr8 | 17743080 | - |
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FusionProtFeatures for PSD3_FGL1 |
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Hgene | Tgene |
PSD3 | FGL1 |
Guanine nucleotide exchange factor for ARF6.{ECO:0000250}. | Has hepatocyte mitogenic activity. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for PSD3_FGL1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for PSD3_FGL1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
PSD3 | MLH1, PMS2, ARAP1, MX1, TP53, CTDSPL, PTPRA, PTPRG | FGL1 | VKORC1, BCL2L11, EPPK1, LSG1, ALDH5A1, NAA35, PXDN, AARS2, CARKD, RAVER1, TBC1D10A, PPIL2, MAP1S, UBR1, CWF19L2, AMMECR1L, COL14A1, DDB2, SORL1, GTF2H2, CMAS, TLE3, TLE1, NSUN2, FBXO38, MLLT4, ARHGEF2, OGFOD1, PPP1R1A, TSR3, DCAF16, NDUFS6, NUCB1, MAPRE2, C1orf198, TUT1, TUBE1, LOH12CR1, DNM1L, PLAT, PTPN23, COL4A2, FAM172A, ERCC3, ETHE1, DPYSL5, GOLM1, ZADH2, UBA5, GTF2H3, NIPSNAP3A, MMADHC, GTF2H1, TFIP11, TUBD1, LCMT2, CENPC, TCF25, SPATS2L, C16orf59, SLTM, C17orf59, PLEKHA7, ATXN2, RBM6, TRIP6, ANKLE2, RIPK1, EPS8 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for PSD3_FGL1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PSD3_FGL1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | PSD3 | C0017638 | Glioma | 1 | CTD_human |
Hgene | PSD3 | C0036341 | Schizophrenia | 1 | PSYGENET |
Hgene | PSD3 | C0236733 | Amphetamine-Related Disorders | 1 | CTD_human |