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Fusion gene ID: 29070 |
FusionGeneSummary for PSD3_ANO1 |
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Fusion gene information | Fusion gene name: PSD3_ANO1 | Fusion gene ID: 29070 | Hgene | Tgene | Gene symbol | PSD3 | ANO1 | Gene ID | 23362 | 55107 |
Gene name | pleckstrin and Sec7 domain containing 3 | anoctamin 1 | |
Synonyms | EFA6D|EFA6R|HCA67 | DOG1|ORAOV2|TAOS2|TMEM16A | |
Cytomap | 8p22 | 11q13.3 | |
Type of gene | protein-coding | protein-coding | |
Description | PH and SEC7 domain-containing protein 3ADP-ribosylation factor guanine nucleotide factor 6epididymis tissue protein Li 20mPexchange factor for ADP-ribosylation factor guanine nucleotide factor 6exchange factor for ADP-ribosylation factor guanine nucle | anoctamin-1Ca2+-activated Cl- channelanoctamin 1, calcium activated chloride channelcalcium activated chloride channeldiscovered on gastrointestinal stromal tumors protein 1oral cancer overexpressed 2transmembrane protein 16A (eight membrane-spannin | |
Modification date | 20180523 | 20180519 | |
UniProtAcc | Q9NYI0 | Q5XXA6 | |
Ensembl transtripts involved in fusion gene | ENST00000327040, ENST00000440756, ENST00000286485, ENST00000428502, ENST00000523619, ENST00000520789, | ENST00000355303, ENST00000398543, ENST00000538023, ENST00000316296, ENST00000530676, ENST00000531349, ENST00000525494, | |
Fusion gene scores | * DoF score | 8 X 7 X 6=336 | 15 X 14 X 7=1470 |
# samples | 8 | 18 | |
** MAII score | log2(8/336*10)=-2.0703893278914 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(18/1470*10)=-3.02974734339405 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: PSD3 [Title/Abstract] AND ANO1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | ANO1 | GO:0006812 | cation transport | 22946059 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | HNSC | TCGA-CN-4735-01A | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000327040 | ENST00000355303 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
5CDS-5UTR | ENST00000327040 | ENST00000398543 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
5CDS-5UTR | ENST00000327040 | ENST00000538023 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
5CDS-5UTR | ENST00000327040 | ENST00000316296 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
5CDS-5UTR | ENST00000327040 | ENST00000530676 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
5CDS-intron | ENST00000327040 | ENST00000531349 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
5CDS-intron | ENST00000327040 | ENST00000525494 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
Frame-shift | ENST00000440756 | ENST00000355303 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
5CDS-5UTR | ENST00000440756 | ENST00000398543 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
5CDS-5UTR | ENST00000440756 | ENST00000538023 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
5CDS-5UTR | ENST00000440756 | ENST00000316296 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
5CDS-5UTR | ENST00000440756 | ENST00000530676 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
5CDS-intron | ENST00000440756 | ENST00000531349 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
5CDS-intron | ENST00000440756 | ENST00000525494 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
intron-3CDS | ENST00000286485 | ENST00000355303 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
intron-5UTR | ENST00000286485 | ENST00000398543 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
intron-5UTR | ENST00000286485 | ENST00000538023 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
intron-5UTR | ENST00000286485 | ENST00000316296 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
intron-5UTR | ENST00000286485 | ENST00000530676 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
intron-intron | ENST00000286485 | ENST00000531349 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
intron-intron | ENST00000286485 | ENST00000525494 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
intron-3CDS | ENST00000428502 | ENST00000355303 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
intron-5UTR | ENST00000428502 | ENST00000398543 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
intron-5UTR | ENST00000428502 | ENST00000538023 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
intron-5UTR | ENST00000428502 | ENST00000316296 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
intron-5UTR | ENST00000428502 | ENST00000530676 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
intron-intron | ENST00000428502 | ENST00000531349 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
intron-intron | ENST00000428502 | ENST00000525494 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
Frame-shift | ENST00000523619 | ENST00000355303 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
5CDS-5UTR | ENST00000523619 | ENST00000398543 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
5CDS-5UTR | ENST00000523619 | ENST00000538023 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
5CDS-5UTR | ENST00000523619 | ENST00000316296 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
5CDS-5UTR | ENST00000523619 | ENST00000530676 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
5CDS-intron | ENST00000523619 | ENST00000531349 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
5CDS-intron | ENST00000523619 | ENST00000525494 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
intron-3CDS | ENST00000520789 | ENST00000355303 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
intron-5UTR | ENST00000520789 | ENST00000398543 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
intron-5UTR | ENST00000520789 | ENST00000538023 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
intron-5UTR | ENST00000520789 | ENST00000316296 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
intron-5UTR | ENST00000520789 | ENST00000530676 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
intron-intron | ENST00000520789 | ENST00000531349 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
intron-intron | ENST00000520789 | ENST00000525494 | PSD3 | chr8 | 18725184 | - | ANO1 | chr11 | 69933858 | + |
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FusionProtFeatures for PSD3_ANO1 |
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Hgene | Tgene |
PSD3 | ANO1 |
Guanine nucleotide exchange factor for ARF6.{ECO:0000250}. | Calcium-activated chloride channel (CaCC) which plays arole in transepithelial anion transport and smooth musclecontraction. Required for the normal functioning of theinterstitial cells of Cajal (ICCs) which generate electricalpacemaker activity in gastrointestinal smooth muscles. Acts as amajor contributor to basal and stimulated chloride conductance inairway epithelial cells and plays an important role in trachealcartilage development. {ECO:0000269|PubMed:20056604,ECO:0000269|PubMed:21984732, ECO:0000269|PubMed:22178883,ECO:0000269|PubMed:22946059}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for PSD3_ANO1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for PSD3_ANO1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
PSD3 | MLH1, PMS2, ARAP1, MX1, TP53, CTDSPL, PTPRA, PTPRG | ANO1 | EWSR1 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for PSD3_ANO1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PSD3_ANO1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | PSD3 | C0017638 | Glioma | 1 | CTD_human |
Hgene | PSD3 | C0036341 | Schizophrenia | 1 | PSYGENET |
Hgene | PSD3 | C0236733 | Amphetamine-Related Disorders | 1 | CTD_human |