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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 29000

FusionGeneSummary for PRRG4_QSER1

check button Fusion gene summary
Fusion gene informationFusion gene name: PRRG4_QSER1
Fusion gene ID: 29000
HgeneTgene
Gene symbol

PRRG4

QSER1

Gene ID

79056

79832

Gene nameproline rich and Gla domain 4glutamine and serine rich 1
SynonymsPRGP4|TMG4-
Cytomap

11p13

11p13

Type of geneprotein-codingprotein-coding
Descriptiontransmembrane gamma-carboxyglutamic acid protein 4proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)proline rich Gla 4 (transmembrane) isoform 1proline rich Gla 4 (transmembrane) isoform 2proline rich Gla 4 (transmembrane) isoform 3proline-rglutamine and serine-rich protein 1
Modification date2018051920180519
UniProtAcc

Q9BZD6

Q2KHR3

Ensembl transtripts involved in fusion geneENST00000257836, ENST00000399302, 
ENST00000527250, ENST00000527788, 
Fusion gene scores* DoF score4 X 2 X 4=324 X 5 X 3=60
# samples 45
** MAII scorelog2(4/32*10)=0.321928094887362
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
log2(5/60*10)=-0.263034405833794
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: PRRG4 [Title/Abstract] AND QSER1 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGALDHNSCTCGA-CN-4736-01APRRG4chr11

32852178

+QSER1chr11

32975403

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000257836ENST00000399302PRRG4chr11

32852178

+QSER1chr11

32975403

+
5CDS-intronENST00000257836ENST00000527250PRRG4chr11

32852178

+QSER1chr11

32975403

+
5CDS-intronENST00000257836ENST00000527788PRRG4chr11

32852178

+QSER1chr11

32975403

+

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FusionProtFeatures for PRRG4_QSER1


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
PRRG4

Q9BZD6

QSER1

Q2KHR3


check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
>>>>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgenePRRG4chr11:32852178chr11:32975403ENST00000257836+26203_20834227Compositional biasNote=Poly-Pro
HgenePRRG4chr11:32852178chr11:32975403ENST00000257836+2652_9834227DomainGla
HgenePRRG4chr11:32852178chr11:32975403ENST00000257836+26135_22634227Topological domainCytoplasmic
HgenePRRG4chr11:32852178chr11:32975403ENST00000257836+2650_11334227Topological domainExtracellular
HgenePRRG4chr11:32852178chr11:32975403ENST00000257836+26114_13434227TransmembraneHelical
TgeneQSER1chr11:32852178chr11:32975403ENST00000399302+313120_52712631736Compositional biasNote=Ser-rich
TgeneQSER1chr11:32852178chr11:32975403ENST00000399302+313641_78912631736Compositional biasNote=Gln-rich
TgeneQSER1chr11:32852178chr11:32975403ENST00000527788+416120_52710241530Compositional biasNote=Ser-rich
TgeneQSER1chr11:32852178chr11:32975403ENST00000527788+416641_78910241530Compositional biasNote=Gln-rich


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FusionGeneSequence for PRRG4_QSER1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.
>In-frame_PRRG4_ENST00000257836_chr11_32852178_+_QSER1_ENST00000399302_chr11_32975403_+_507aa
MFTLLVLLSQLPTVTLGFPHCARGPKASKHAGEEEALQVATTSPTANTTGTATTSSTTVGAVKQEPLHSTSYAVNILENISSSESSKPIE
LDGLPSDQFAKGQDTVAIEGFTDEEDTESGGEGQYRERDEFVVKIEDIETFKEALKTGKEPPAIWKVQKALLQKFVPEIRDGQREFAATN
SYLGYFGDAKSKYKRIYVKFIENANKKEYVRVCSKKPRNKPSQTIRTVQAKPSSSSKTSDPLASKTTTTKAPSVKPKVKQPKVKAEPPPK
KRKKWKEEFSSSQSDSSPEIHTSSSDDEEFEPPAPFVTRFLNTRAMKETFKSYMELLVSIALDPDTMQALEKSNDELLLPHMKKIDGMLN
DNRKRLLLNLHLDQSFKNALESFPELTIITRDSKAKSGGTAISKIKMNGKAYNKKTLRTSKTTTKSAQEFAVDPEKIQLYSLYHSLHHYK


* Fusion transcript sequences (only coding sequence (CDS) region).
>In-frame_PRRG4_ENST00000257836_chr11_32852178_+_QSER1_ENST00000399302_chr11_32975403_+_1521nt
ATGTTTACGCTTCTGGTTCTACTCAGCCAACTGCCCACAGTTACCCTGGGGTTTCCTCATTGCGCAAGAGGTCCAAAGGCTTCTAAGCAT
GCGGGAGAAGAAGAAGCCCTACAGGTGGCAACTACTAGCCCAACTGCCAATACTACTGGTACTGCTACTACTTCCTCAACCACTGTGGGT
GCAGTTAAGCAAGAACCTCTCCACTCTACTTCATATGCAGTAAATATTCTGGAAAATATAAGCTCTTCAGAATCCTCAAAGCCCATTGAA
CTTGATGGTCTTCCTTCAGACCAGTTTGCAAAAGGACAGGACACTGTTGCCATAGAAGGTTTTACAGATGAGGAGGACACAGAAAGCGGA
GGAGAAGGCCAATACAGAGAGCGTGATGAATTTGTGGTAAAGATAGAAGACATAGAGACTTTTAAGGAGGCTTTAAAAACAGGAAAAGAA
CCTCCAGCTATTTGGAAAGTACAAAAAGCTTTATTACAGAAATTTGTTCCTGAAATTCGAGATGGTCAAAGAGAATTTGCTGCTACAAAT
AGTTATCTTGGATATTTTGGAGATGCAAAGAGTAAATACAAAAGAATATATGTGAAGTTCATTGAAAATGCAAACAAGAAGGAATATGTC
AGAGTGTGTTCTAAAAAGCCAAGAAATAAACCTTCACAAACTATCAGAACTGTTCAAGCTAAGCCAAGTAGTAGCAGTAAAACTTCTGAT
CCTCTAGCATCAAAAACTACAACTACAAAAGCCCCTTCCGTGAAACCCAAAGTTAAACAGCCAAAAGTAAAGGCTGAGCCACCACCAAAG
AAACGGAAAAAATGGAAAGAAGAATTTTCATCATCCCAATCTGACTCATCTCCTGAGATCCATACTAGTAGTAGTGACGATGAGGAATTT
GAACCTCCCGCTCCCTTTGTCACTCGCTTTTTGAACACAAGAGCAATGAAGGAAACCTTTAAGAGCTACATGGAATTGCTTGTTAGCATT
GCCTTGGACCCTGACACAATGCAAGCCTTAGAGAAGAGCAATGATGAGCTACTTTTACCTCATATGAAAAAAATAGATGGCATGCTAAAT
GATAACCGAAAGAGACTTCTTTTGAATCTTCATTTGGATCAATCATTCAAGAATGCTTTGGAAAGTTTTCCTGAACTAACAATAATTACT
CGAGATTCTAAAGCAAAGAGTGGAGGAACTGCTATTTCTAAAATCAAAATGAATGGCAAAGCCTATAATAAGAAAACTCTAAGGACTTCT
AAAACAACCACCAAATCTGCACAAGAGTTTGCTGTCGATCCAGAGAAAATACAGTTGTATTCTTTGTATCATTCACTCCATCATTATAAG
TACCATGTTTATCTGATATGTAAGGATGAGATTTCTTCGGTGCAGAAAAAAAATGAAGATTTAGGACAGGAGGAAATTGTTCAACTTTGT


* Fusion transcript sequences (Full-length transcript).
>In-frame_PRRG4_ENST00000257836_chr11_32852178_+_QSER1_ENST00000399302_chr11_32975403_+_5566nt
CCCGGACCGAGGCAGGACCTCACCCCGCGCGTGTTCCCCGGGCGCCCCTCTGCGAACCCCAGGCCCTTCCCAGGTTTGCGCGCGGGGGCC
ATCCAGACCCTGCGGAGAGCGAGGCCCGGAGCGTCGCCGAGGTTTGAGGGCGCCGGAGACCGAGGGCCTGGCGGCCGAAGGAACCGCCCC
AAGAAGAGCCTCTGGCCCGGGGGCTGCTGGAACATGTGCGGGGGGACACAGTTTGTTTGACAGTTGCCAGACTATGTTTACGCTTCTGGT
TCTACTCAGCCAACTGCCCACAGTTACCCTGGGGTTTCCTCATTGCGCAAGAGGTCCAAAGGCTTCTAAGCATGCGGGAGAAGAAGAAGC
CCTACAGGTGGCAACTACTAGCCCAACTGCCAATACTACTGGTACTGCTACTACTTCCTCAACCACTGTGGGTGCAGTTAAGCAAGAACC
TCTCCACTCTACTTCATATGCAGTAAATATTCTGGAAAATATAAGCTCTTCAGAATCCTCAAAGCCCATTGAACTTGATGGTCTTCCTTC
AGACCAGTTTGCAAAAGGACAGGACACTGTTGCCATAGAAGGTTTTACAGATGAGGAGGACACAGAAAGCGGAGGAGAAGGCCAATACAG
AGAGCGTGATGAATTTGTGGTAAAGATAGAAGACATAGAGACTTTTAAGGAGGCTTTAAAAACAGGAAAAGAACCTCCAGCTATTTGGAA
AGTACAAAAAGCTTTATTACAGAAATTTGTTCCTGAAATTCGAGATGGTCAAAGAGAATTTGCTGCTACAAATAGTTATCTTGGATATTT
TGGAGATGCAAAGAGTAAATACAAAAGAATATATGTGAAGTTCATTGAAAATGCAAACAAGAAGGAATATGTCAGAGTGTGTTCTAAAAA
GCCAAGAAATAAACCTTCACAAACTATCAGAACTGTTCAAGCTAAGCCAAGTAGTAGCAGTAAAACTTCTGATCCTCTAGCATCAAAAAC
TACAACTACAAAAGCCCCTTCCGTGAAACCCAAAGTTAAACAGCCAAAAGTAAAGGCTGAGCCACCACCAAAGAAACGGAAAAAATGGAA
AGAAGAATTTTCATCATCCCAATCTGACTCATCTCCTGAGATCCATACTAGTAGTAGTGACGATGAGGAATTTGAACCTCCCGCTCCCTT
TGTCACTCGCTTTTTGAACACAAGAGCAATGAAGGAAACCTTTAAGAGCTACATGGAATTGCTTGTTAGCATTGCCTTGGACCCTGACAC
AATGCAAGCCTTAGAGAAGAGCAATGATGAGCTACTTTTACCTCATATGAAAAAAATAGATGGCATGCTAAATGATAACCGAAAGAGACT
TCTTTTGAATCTTCATTTGGATCAATCATTCAAGAATGCTTTGGAAAGTTTTCCTGAACTAACAATAATTACTCGAGATTCTAAAGCAAA
GAGTGGAGGAACTGCTATTTCTAAAATCAAAATGAATGGCAAAGCCTATAATAAGAAAACTCTAAGGACTTCTAAAACAACCACCAAATC
TGCACAAGAGTTTGCTGTCGATCCAGAGAAAATACAGTTGTATTCTTTGTATCATTCACTCCATCATTATAAGTACCATGTTTATCTGAT
ATGTAAGGATGAGATTTCTTCGGTGCAGAAAAAAAATGAAGATTTAGGACAGGAGGAAATTGTTCAACTTTGTATGAAAAATGTAAAATG
GGTGGAGGACCTCTTTGAAAAATTTGGAGAACTTCTAAATCATGTACAGCAGAAATGTTCCTGACTTTTCCACAAAAATCCCATCTTTTT
ATAGCACTAATGAAATGGCAGATATGGGGTGGTCAAAGATAATCAGATGTCAAGTAGTGGCCTTCTGCAGGCCGGCCGCTTCCATCATGG
AACTGTCATTACCACCTCTGCTGAAGGACAGTGGTGCGGCCTTTAGGAACGAAGTTAGTCCTCTGGAAATGGACCTAAATCCCACCACAT
TTTTACCCTAATGAATGATTTTTCTATTTTGTAAACCATTGGGTAACTTGAGTCATATTTTCAGAAACATTTTTTGACAAATGATGAAGC
ATGCACTAAGTATAATTTTTTTTTATTGCTAGAGAAGTAACACTTAAAGTAACGATTTTTTTTTTCTGACTCCGGCTAAACACCAGAATG
ACAGAGAAGTGGCAGAAACCATATGTTTGTACTCACATCTGGCCACAAAACCAGAAATACTGTACATTATGTAAAGAGGTCTGGTGTGGT
GTGACATCCTGTATAAGAATATCATCAATTTAAAATATAAAATTTGGAAACTATTCTGCTTTACAGACTCCTTTTACTCTTAACATGTTC
AGGAAACTGGATGTGGAATTGGTGCAATTCTCTGACTGCTTTTTGTGTCAAATTATATTGTGATAAAAAAACAATGACATACTATTTTCC
CTATCGCAAAGAAAAGTATTTTCGTTTATACTGTTTTTTCCTTTGGAAAATTTTCAATTGTACATTTTATTTCACTGATAGTTGTATTTT
TCACAAGGAAAATGTTGTGGTTATAATTACGTTTGATATATCTCTACAACACCTTTTGTTATTTTCAGTAAATCTTAGTTATATGTTGAA
TTTCTAATGTGAATTCTATCTTGAGGTAACCATTTTTTTCATACAGATTTGCTTCAGTGTTATCCAGAATATGCATTCAGTACTAGAATT
AGTTTAGCTTTATAAATAGGGCTGTGTTAGACACTGCAGTAATTTTCTAATTCATAAAATAAACTTCTTACTAAACTAGCACTTGATTAA
CTTGTTGAGGTAAAAATCTAACTACATTTACATTTTGAAGAATAAAACTGATAATTAGACTATTTGCAGTGTTAAACACAGCTTCCTTAA
CTCTTAGAACTGGAAGTTGTAGAGCTCTCCTTTTGGTGCCTTTCCAGCCTTTATACACACTATTGTAGCTTTCTTAGGTTTGATAGGTAG
CGTTTCAAGTAGTTTAGCTGAGACAGTGAATGTATTAGGTTCAACATGACCTTGTGTTTTATTTGTGTTTGCCAACAGGATGCCTTATTT
GTTTGAGAAAAAGATGTACTAGTGTCATTCTAAACTATCTCCTTTTTTAGGATTCTAAAGAAGTTAATCATCATCCTTTTGTTTATTTTA
CCACCATTTAGTGCCTTAAATCCTATCAAGAAAGCAGTGTTACTGCTCAATGCCCAAATAAGACACGCGGATATTGCTATTGTCTTGCTT
TTGAGTTAACAGGCCAACTTTTTATACTTAAAACCTCAGTAAACTGGCAAAGAATTGAAGGTAATGTGATTTGATTTGAGAATAAAACAT
TGTAGCATTGGGTGAAAAATGAGTATTTGAGTTAAGCTTACATATTTATTTCTGATGGTTATCTTATTAAAAGCAATAATCCTTAATACT
GTACTTGCCATTAGACTAGGTACTCAGTAATGGAAGTTTCTCTCAAGGGTTAAATGTTCCATTTTTGAAAGTTTTAAAAAACCTGTTTGG
GTGGTTTATTTTGAAAACAAAAGTAACCTATTAGATTCATTTTGCCTAACTCATATGAGAGATGCAGAGTATCAACAGTGGGAGCATCAT
AAAATGAATTTTCCAAGTGGAGAGGAGTAGGAAGCAGCCATATGATAGTATTGACTCTGGACAGAATTGATGTCTTTCGTTTCCAAAGTG
CAGAGTAGGGAACTACATTTCCTAATGTGGCATTGTAAATATACATCTTTATATTACTCTTCCAGCCTACGTTCCTAAATCATTGATAAT
TTAAATATTTTTTAAAGCCACCTTAATTTAGGTAGCTCTTGGAATCGATGTTTGAATTCACTAGCCACATTTTCTTCATGATATGCCTCG
TGGCAAACAAAGATGTTTCCTTAAGATGAATCTTACATTTCCCATAGAAAATAACCCATTTCCTTTGGCACTGCAGTTGCCCTCAAACTG
CTTGCAGTTGTATTCATTTTAGTACAACAAAGGTTTTCATAATATGGGAGGCCAAGTCTATGATACTGCCTCAAAGAGACCCTATTGTGT
AGATGCATCATCTTCTCTCATTTGATCCATAGAGCATAGGCAAAGATGTCAACCTCAGGCCTTAGAGAAAAGTGGAAATGTTATTATGAC
AGCCGTCCATGAGTTATCGCTTTGTATGAAGTTAAATACAGTCATGCGTTGCTTAACAGCAGGGATACATTCTGAGAAATGCATTGTTAG
GCAATTCCGTTGTGCGAACATCCTAGTGTACTTACACAAACCTAGGTGGCATAGCCCACAACGTACCCAGGCTATATGGTAAACCTGTAC
AGCATGTTACTGTACTGAATACTGTAGGCAGTTGTAACACAATGGTATTTGTGTATCTAGACATAGAAAACATACAGTAAGAATATGGTA
TTATAATCTTACGGGACCACTGTCAAATACGCGGTCTGTCTTTGAAAAGTTGTAATGCGGCGCATGACTATAAATACCTAGCTGGTTAGC
ATTTACATTCCTTGCCAGGGAGTTTGAAATTTATACTATAGAAATAACTTTAGGTTTTAGGTAGAGTTAAAGAGGTAAAGCACATGTTGC
CACAACCCAGGAAAGTATTTTTAAGAAAGATTGGATTTTCCTACCTTTAGAGATCTAAAAAAAATTTAATATAAAAAATCATTTTGTGTT
GGTGTTTATTACTAGTTCAGATGAGTGGCTGCTGAAGGGGCCCCCTTGTCATTTTCATTATAACCCAATTTCCACTTATTTGAACTCTTA
AGTCATAAATGTATAATGACTTATGAATTAGCACAGTTAAGTTGACACTAGAAACTGCCCATTTCTGTATTACACTATCAAATAGGAAAC
ATTGGAAAGATGGGGAAAAAAATCTTATTTTAAAATGGCTTAGAAAGTTTTCAGATTACTTTGAAAATTCTAAACTTCTTTCTGTTTCCA
AAACTTGAAAATATGTAGATGGACTCATGCATTAAGACTGTTTTCAAAGCTTTCCTCACATTTTTAAAGTGTGATTTTCCTTTTAATATA
CATATTTATTTTCTTTAAAGCAGCTATATCCCAACCCATGACTTTGGAGATATACCTATAAAACCAATATAACAGCAGGGTTATTGAAGC
AGCTTTCTCAAATGTTGCTTCAGATGTGCAAGTTGCAAATTTTATTGTATTTGTAGAATACAATTTTTGTTTTAAACTGTATTTCAATCT
ATTTCTCCAAGATGCTTTTCATATAGAGTGAAATATCCCAGGATAACTGCTTCTGTGTCAGTCGCATTTGACGCATAACTGCACAAATGA
ACAGTGTATACTCTTGGTTGTGCATTAACTTACATGTATAATTTTTGGCATCTGTGTTCACAAATGCATGTGTTAGCAAATCACCTTTAT
TTATAAGTGACAATAATTGAAGTTAAGGATATAAAGAAACCTGCATTTGTAGTCCAGCGTTTTCATTTGGTCCATAACACAATGTATGGA


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FusionGenePPI for PRRG4_QSER1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
PRRG4HLA-C, HDAC1, BCL10, VEGFA, UBE2K, RBBP8, AOC3, STXBP4, YAP1QSER1SOX2, MAGEA10, FHL3, FAM170A, HNRNPH2, PDLIM7, FBXO31, FOXJ2, FOXP1, C11orf30, PHF12, GATAD1, COMMD8, HSPBP1, PLEC, AAK1, SEC24B, CCDC88A, EYA4, UBE2D2, BRD1


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for PRRG4_QSER1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for PRRG4_QSER1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource