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Fusion gene ID: 29000 |
FusionGeneSummary for PRRG4_QSER1 |
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Fusion gene information | Fusion gene name: PRRG4_QSER1 | Fusion gene ID: 29000 | Hgene | Tgene | Gene symbol | PRRG4 | QSER1 | Gene ID | 79056 | 79832 |
Gene name | proline rich and Gla domain 4 | glutamine and serine rich 1 | |
Synonyms | PRGP4|TMG4 | - | |
Cytomap | 11p13 | 11p13 | |
Type of gene | protein-coding | protein-coding | |
Description | transmembrane gamma-carboxyglutamic acid protein 4proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)proline rich Gla 4 (transmembrane) isoform 1proline rich Gla 4 (transmembrane) isoform 2proline rich Gla 4 (transmembrane) isoform 3proline-r | glutamine and serine-rich protein 1 | |
Modification date | 20180519 | 20180519 | |
UniProtAcc | Q9BZD6 | Q2KHR3 | |
Ensembl transtripts involved in fusion gene | ENST00000257836, | ENST00000399302, ENST00000527250, ENST00000527788, | |
Fusion gene scores | * DoF score | 4 X 2 X 4=32 | 4 X 5 X 3=60 |
# samples | 4 | 5 | |
** MAII score | log2(4/32*10)=0.321928094887362 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(5/60*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: PRRG4 [Title/Abstract] AND QSER1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | HNSC | TCGA-CN-4736-01A | PRRG4 | chr11 | 32852178 | + | QSER1 | chr11 | 32975403 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000257836 | ENST00000399302 | PRRG4 | chr11 | 32852178 | + | QSER1 | chr11 | 32975403 | + |
5CDS-intron | ENST00000257836 | ENST00000527250 | PRRG4 | chr11 | 32852178 | + | QSER1 | chr11 | 32975403 | + |
5CDS-intron | ENST00000257836 | ENST00000527788 | PRRG4 | chr11 | 32852178 | + | QSER1 | chr11 | 32975403 | + |
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FusionProtFeatures for PRRG4_QSER1 |
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Hgene | Tgene |
PRRG4 | QSER1 |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >PRRG4 | chr11:32852178 | chr11:32975403 | ENST00000257836 | + | 2 | 6 | 203_208 | 34 | 227 | Compositional bias | Note=Poly-Pro |
Hgene | >PRRG4 | chr11:32852178 | chr11:32975403 | ENST00000257836 | + | 2 | 6 | 52_98 | 34 | 227 | Domain | Gla |
Hgene | >PRRG4 | chr11:32852178 | chr11:32975403 | ENST00000257836 | + | 2 | 6 | 135_226 | 34 | 227 | Topological domain | Cytoplasmic |
Hgene | >PRRG4 | chr11:32852178 | chr11:32975403 | ENST00000257836 | + | 2 | 6 | 50_113 | 34 | 227 | Topological domain | Extracellular |
Hgene | >PRRG4 | chr11:32852178 | chr11:32975403 | ENST00000257836 | + | 2 | 6 | 114_134 | 34 | 227 | Transmembrane | Helical |
Tgene | QSER1 | chr11:32852178 | chr11:32975403 | ENST00000399302 | + | 3 | 13 | 120_527 | 1263 | 1736 | Compositional bias | Note=Ser-rich |
Tgene | QSER1 | chr11:32852178 | chr11:32975403 | ENST00000399302 | + | 3 | 13 | 641_789 | 1263 | 1736 | Compositional bias | Note=Gln-rich |
Tgene | QSER1 | chr11:32852178 | chr11:32975403 | ENST00000527788 | + | 4 | 16 | 120_527 | 1024 | 1530 | Compositional bias | Note=Ser-rich |
Tgene | QSER1 | chr11:32852178 | chr11:32975403 | ENST00000527788 | + | 4 | 16 | 641_789 | 1024 | 1530 | Compositional bias | Note=Gln-rich |
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FusionGeneSequence for PRRG4_QSER1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_PRRG4_ENST00000257836_chr11_32852178_+_QSER1_ENST00000399302_chr11_32975403_+_507aa MFTLLVLLSQLPTVTLGFPHCARGPKASKHAGEEEALQVATTSPTANTTGTATTSSTTVGAVKQEPLHSTSYAVNILENISSSESSKPIE LDGLPSDQFAKGQDTVAIEGFTDEEDTESGGEGQYRERDEFVVKIEDIETFKEALKTGKEPPAIWKVQKALLQKFVPEIRDGQREFAATN SYLGYFGDAKSKYKRIYVKFIENANKKEYVRVCSKKPRNKPSQTIRTVQAKPSSSSKTSDPLASKTTTTKAPSVKPKVKQPKVKAEPPPK KRKKWKEEFSSSQSDSSPEIHTSSSDDEEFEPPAPFVTRFLNTRAMKETFKSYMELLVSIALDPDTMQALEKSNDELLLPHMKKIDGMLN DNRKRLLLNLHLDQSFKNALESFPELTIITRDSKAKSGGTAISKIKMNGKAYNKKTLRTSKTTTKSAQEFAVDPEKIQLYSLYHSLHHYK |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_PRRG4_ENST00000257836_chr11_32852178_+_QSER1_ENST00000399302_chr11_32975403_+_1521nt ATGTTTACGCTTCTGGTTCTACTCAGCCAACTGCCCACAGTTACCCTGGGGTTTCCTCATTGCGCAAGAGGTCCAAAGGCTTCTAAGCAT GCGGGAGAAGAAGAAGCCCTACAGGTGGCAACTACTAGCCCAACTGCCAATACTACTGGTACTGCTACTACTTCCTCAACCACTGTGGGT GCAGTTAAGCAAGAACCTCTCCACTCTACTTCATATGCAGTAAATATTCTGGAAAATATAAGCTCTTCAGAATCCTCAAAGCCCATTGAA CTTGATGGTCTTCCTTCAGACCAGTTTGCAAAAGGACAGGACACTGTTGCCATAGAAGGTTTTACAGATGAGGAGGACACAGAAAGCGGA GGAGAAGGCCAATACAGAGAGCGTGATGAATTTGTGGTAAAGATAGAAGACATAGAGACTTTTAAGGAGGCTTTAAAAACAGGAAAAGAA CCTCCAGCTATTTGGAAAGTACAAAAAGCTTTATTACAGAAATTTGTTCCTGAAATTCGAGATGGTCAAAGAGAATTTGCTGCTACAAAT AGTTATCTTGGATATTTTGGAGATGCAAAGAGTAAATACAAAAGAATATATGTGAAGTTCATTGAAAATGCAAACAAGAAGGAATATGTC AGAGTGTGTTCTAAAAAGCCAAGAAATAAACCTTCACAAACTATCAGAACTGTTCAAGCTAAGCCAAGTAGTAGCAGTAAAACTTCTGAT CCTCTAGCATCAAAAACTACAACTACAAAAGCCCCTTCCGTGAAACCCAAAGTTAAACAGCCAAAAGTAAAGGCTGAGCCACCACCAAAG AAACGGAAAAAATGGAAAGAAGAATTTTCATCATCCCAATCTGACTCATCTCCTGAGATCCATACTAGTAGTAGTGACGATGAGGAATTT GAACCTCCCGCTCCCTTTGTCACTCGCTTTTTGAACACAAGAGCAATGAAGGAAACCTTTAAGAGCTACATGGAATTGCTTGTTAGCATT GCCTTGGACCCTGACACAATGCAAGCCTTAGAGAAGAGCAATGATGAGCTACTTTTACCTCATATGAAAAAAATAGATGGCATGCTAAAT GATAACCGAAAGAGACTTCTTTTGAATCTTCATTTGGATCAATCATTCAAGAATGCTTTGGAAAGTTTTCCTGAACTAACAATAATTACT CGAGATTCTAAAGCAAAGAGTGGAGGAACTGCTATTTCTAAAATCAAAATGAATGGCAAAGCCTATAATAAGAAAACTCTAAGGACTTCT AAAACAACCACCAAATCTGCACAAGAGTTTGCTGTCGATCCAGAGAAAATACAGTTGTATTCTTTGTATCATTCACTCCATCATTATAAG TACCATGTTTATCTGATATGTAAGGATGAGATTTCTTCGGTGCAGAAAAAAAATGAAGATTTAGGACAGGAGGAAATTGTTCAACTTTGT |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_PRRG4_ENST00000257836_chr11_32852178_+_QSER1_ENST00000399302_chr11_32975403_+_5566nt CCCGGACCGAGGCAGGACCTCACCCCGCGCGTGTTCCCCGGGCGCCCCTCTGCGAACCCCAGGCCCTTCCCAGGTTTGCGCGCGGGGGCC ATCCAGACCCTGCGGAGAGCGAGGCCCGGAGCGTCGCCGAGGTTTGAGGGCGCCGGAGACCGAGGGCCTGGCGGCCGAAGGAACCGCCCC AAGAAGAGCCTCTGGCCCGGGGGCTGCTGGAACATGTGCGGGGGGACACAGTTTGTTTGACAGTTGCCAGACTATGTTTACGCTTCTGGT TCTACTCAGCCAACTGCCCACAGTTACCCTGGGGTTTCCTCATTGCGCAAGAGGTCCAAAGGCTTCTAAGCATGCGGGAGAAGAAGAAGC CCTACAGGTGGCAACTACTAGCCCAACTGCCAATACTACTGGTACTGCTACTACTTCCTCAACCACTGTGGGTGCAGTTAAGCAAGAACC TCTCCACTCTACTTCATATGCAGTAAATATTCTGGAAAATATAAGCTCTTCAGAATCCTCAAAGCCCATTGAACTTGATGGTCTTCCTTC AGACCAGTTTGCAAAAGGACAGGACACTGTTGCCATAGAAGGTTTTACAGATGAGGAGGACACAGAAAGCGGAGGAGAAGGCCAATACAG AGAGCGTGATGAATTTGTGGTAAAGATAGAAGACATAGAGACTTTTAAGGAGGCTTTAAAAACAGGAAAAGAACCTCCAGCTATTTGGAA AGTACAAAAAGCTTTATTACAGAAATTTGTTCCTGAAATTCGAGATGGTCAAAGAGAATTTGCTGCTACAAATAGTTATCTTGGATATTT TGGAGATGCAAAGAGTAAATACAAAAGAATATATGTGAAGTTCATTGAAAATGCAAACAAGAAGGAATATGTCAGAGTGTGTTCTAAAAA GCCAAGAAATAAACCTTCACAAACTATCAGAACTGTTCAAGCTAAGCCAAGTAGTAGCAGTAAAACTTCTGATCCTCTAGCATCAAAAAC TACAACTACAAAAGCCCCTTCCGTGAAACCCAAAGTTAAACAGCCAAAAGTAAAGGCTGAGCCACCACCAAAGAAACGGAAAAAATGGAA AGAAGAATTTTCATCATCCCAATCTGACTCATCTCCTGAGATCCATACTAGTAGTAGTGACGATGAGGAATTTGAACCTCCCGCTCCCTT TGTCACTCGCTTTTTGAACACAAGAGCAATGAAGGAAACCTTTAAGAGCTACATGGAATTGCTTGTTAGCATTGCCTTGGACCCTGACAC AATGCAAGCCTTAGAGAAGAGCAATGATGAGCTACTTTTACCTCATATGAAAAAAATAGATGGCATGCTAAATGATAACCGAAAGAGACT TCTTTTGAATCTTCATTTGGATCAATCATTCAAGAATGCTTTGGAAAGTTTTCCTGAACTAACAATAATTACTCGAGATTCTAAAGCAAA GAGTGGAGGAACTGCTATTTCTAAAATCAAAATGAATGGCAAAGCCTATAATAAGAAAACTCTAAGGACTTCTAAAACAACCACCAAATC TGCACAAGAGTTTGCTGTCGATCCAGAGAAAATACAGTTGTATTCTTTGTATCATTCACTCCATCATTATAAGTACCATGTTTATCTGAT ATGTAAGGATGAGATTTCTTCGGTGCAGAAAAAAAATGAAGATTTAGGACAGGAGGAAATTGTTCAACTTTGTATGAAAAATGTAAAATG GGTGGAGGACCTCTTTGAAAAATTTGGAGAACTTCTAAATCATGTACAGCAGAAATGTTCCTGACTTTTCCACAAAAATCCCATCTTTTT ATAGCACTAATGAAATGGCAGATATGGGGTGGTCAAAGATAATCAGATGTCAAGTAGTGGCCTTCTGCAGGCCGGCCGCTTCCATCATGG AACTGTCATTACCACCTCTGCTGAAGGACAGTGGTGCGGCCTTTAGGAACGAAGTTAGTCCTCTGGAAATGGACCTAAATCCCACCACAT TTTTACCCTAATGAATGATTTTTCTATTTTGTAAACCATTGGGTAACTTGAGTCATATTTTCAGAAACATTTTTTGACAAATGATGAAGC ATGCACTAAGTATAATTTTTTTTTATTGCTAGAGAAGTAACACTTAAAGTAACGATTTTTTTTTTCTGACTCCGGCTAAACACCAGAATG ACAGAGAAGTGGCAGAAACCATATGTTTGTACTCACATCTGGCCACAAAACCAGAAATACTGTACATTATGTAAAGAGGTCTGGTGTGGT GTGACATCCTGTATAAGAATATCATCAATTTAAAATATAAAATTTGGAAACTATTCTGCTTTACAGACTCCTTTTACTCTTAACATGTTC AGGAAACTGGATGTGGAATTGGTGCAATTCTCTGACTGCTTTTTGTGTCAAATTATATTGTGATAAAAAAACAATGACATACTATTTTCC CTATCGCAAAGAAAAGTATTTTCGTTTATACTGTTTTTTCCTTTGGAAAATTTTCAATTGTACATTTTATTTCACTGATAGTTGTATTTT TCACAAGGAAAATGTTGTGGTTATAATTACGTTTGATATATCTCTACAACACCTTTTGTTATTTTCAGTAAATCTTAGTTATATGTTGAA TTTCTAATGTGAATTCTATCTTGAGGTAACCATTTTTTTCATACAGATTTGCTTCAGTGTTATCCAGAATATGCATTCAGTACTAGAATT AGTTTAGCTTTATAAATAGGGCTGTGTTAGACACTGCAGTAATTTTCTAATTCATAAAATAAACTTCTTACTAAACTAGCACTTGATTAA CTTGTTGAGGTAAAAATCTAACTACATTTACATTTTGAAGAATAAAACTGATAATTAGACTATTTGCAGTGTTAAACACAGCTTCCTTAA CTCTTAGAACTGGAAGTTGTAGAGCTCTCCTTTTGGTGCCTTTCCAGCCTTTATACACACTATTGTAGCTTTCTTAGGTTTGATAGGTAG CGTTTCAAGTAGTTTAGCTGAGACAGTGAATGTATTAGGTTCAACATGACCTTGTGTTTTATTTGTGTTTGCCAACAGGATGCCTTATTT GTTTGAGAAAAAGATGTACTAGTGTCATTCTAAACTATCTCCTTTTTTAGGATTCTAAAGAAGTTAATCATCATCCTTTTGTTTATTTTA CCACCATTTAGTGCCTTAAATCCTATCAAGAAAGCAGTGTTACTGCTCAATGCCCAAATAAGACACGCGGATATTGCTATTGTCTTGCTT TTGAGTTAACAGGCCAACTTTTTATACTTAAAACCTCAGTAAACTGGCAAAGAATTGAAGGTAATGTGATTTGATTTGAGAATAAAACAT TGTAGCATTGGGTGAAAAATGAGTATTTGAGTTAAGCTTACATATTTATTTCTGATGGTTATCTTATTAAAAGCAATAATCCTTAATACT GTACTTGCCATTAGACTAGGTACTCAGTAATGGAAGTTTCTCTCAAGGGTTAAATGTTCCATTTTTGAAAGTTTTAAAAAACCTGTTTGG GTGGTTTATTTTGAAAACAAAAGTAACCTATTAGATTCATTTTGCCTAACTCATATGAGAGATGCAGAGTATCAACAGTGGGAGCATCAT AAAATGAATTTTCCAAGTGGAGAGGAGTAGGAAGCAGCCATATGATAGTATTGACTCTGGACAGAATTGATGTCTTTCGTTTCCAAAGTG CAGAGTAGGGAACTACATTTCCTAATGTGGCATTGTAAATATACATCTTTATATTACTCTTCCAGCCTACGTTCCTAAATCATTGATAAT TTAAATATTTTTTAAAGCCACCTTAATTTAGGTAGCTCTTGGAATCGATGTTTGAATTCACTAGCCACATTTTCTTCATGATATGCCTCG TGGCAAACAAAGATGTTTCCTTAAGATGAATCTTACATTTCCCATAGAAAATAACCCATTTCCTTTGGCACTGCAGTTGCCCTCAAACTG CTTGCAGTTGTATTCATTTTAGTACAACAAAGGTTTTCATAATATGGGAGGCCAAGTCTATGATACTGCCTCAAAGAGACCCTATTGTGT AGATGCATCATCTTCTCTCATTTGATCCATAGAGCATAGGCAAAGATGTCAACCTCAGGCCTTAGAGAAAAGTGGAAATGTTATTATGAC AGCCGTCCATGAGTTATCGCTTTGTATGAAGTTAAATACAGTCATGCGTTGCTTAACAGCAGGGATACATTCTGAGAAATGCATTGTTAG GCAATTCCGTTGTGCGAACATCCTAGTGTACTTACACAAACCTAGGTGGCATAGCCCACAACGTACCCAGGCTATATGGTAAACCTGTAC AGCATGTTACTGTACTGAATACTGTAGGCAGTTGTAACACAATGGTATTTGTGTATCTAGACATAGAAAACATACAGTAAGAATATGGTA TTATAATCTTACGGGACCACTGTCAAATACGCGGTCTGTCTTTGAAAAGTTGTAATGCGGCGCATGACTATAAATACCTAGCTGGTTAGC ATTTACATTCCTTGCCAGGGAGTTTGAAATTTATACTATAGAAATAACTTTAGGTTTTAGGTAGAGTTAAAGAGGTAAAGCACATGTTGC CACAACCCAGGAAAGTATTTTTAAGAAAGATTGGATTTTCCTACCTTTAGAGATCTAAAAAAAATTTAATATAAAAAATCATTTTGTGTT GGTGTTTATTACTAGTTCAGATGAGTGGCTGCTGAAGGGGCCCCCTTGTCATTTTCATTATAACCCAATTTCCACTTATTTGAACTCTTA AGTCATAAATGTATAATGACTTATGAATTAGCACAGTTAAGTTGACACTAGAAACTGCCCATTTCTGTATTACACTATCAAATAGGAAAC ATTGGAAAGATGGGGAAAAAAATCTTATTTTAAAATGGCTTAGAAAGTTTTCAGATTACTTTGAAAATTCTAAACTTCTTTCTGTTTCCA AAACTTGAAAATATGTAGATGGACTCATGCATTAAGACTGTTTTCAAAGCTTTCCTCACATTTTTAAAGTGTGATTTTCCTTTTAATATA CATATTTATTTTCTTTAAAGCAGCTATATCCCAACCCATGACTTTGGAGATATACCTATAAAACCAATATAACAGCAGGGTTATTGAAGC AGCTTTCTCAAATGTTGCTTCAGATGTGCAAGTTGCAAATTTTATTGTATTTGTAGAATACAATTTTTGTTTTAAACTGTATTTCAATCT ATTTCTCCAAGATGCTTTTCATATAGAGTGAAATATCCCAGGATAACTGCTTCTGTGTCAGTCGCATTTGACGCATAACTGCACAAATGA ACAGTGTATACTCTTGGTTGTGCATTAACTTACATGTATAATTTTTGGCATCTGTGTTCACAAATGCATGTGTTAGCAAATCACCTTTAT TTATAAGTGACAATAATTGAAGTTAAGGATATAAAGAAACCTGCATTTGTAGTCCAGCGTTTTCATTTGGTCCATAACACAATGTATGGA |
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FusionGenePPI for PRRG4_QSER1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
PRRG4 | HLA-C, HDAC1, BCL10, VEGFA, UBE2K, RBBP8, AOC3, STXBP4, YAP1 | QSER1 | SOX2, MAGEA10, FHL3, FAM170A, HNRNPH2, PDLIM7, FBXO31, FOXJ2, FOXP1, C11orf30, PHF12, GATAD1, COMMD8, HSPBP1, PLEC, AAK1, SEC24B, CCDC88A, EYA4, UBE2D2, BRD1 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for PRRG4_QSER1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PRRG4_QSER1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |