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Fusion gene ID: 28861 |
FusionGeneSummary for PRPF38A_ABCD3 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: PRPF38A_ABCD3 | Fusion gene ID: 28861 | Hgene | Tgene | Gene symbol | PRPF38A | ABCD3 | Gene ID | 84950 | 5825 |
| Gene name | pre-mRNA processing factor 38A | ATP binding cassette subfamily D member 3 | |
| Synonyms | PRP38A|Prp38 | ABC43|CBAS5|PMP70|PXMP1|ZWS2 | |
| Cytomap | 1p32.3 | 1p21.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | pre-mRNA-splicing factor 38APRP38 pre-mRNA processing factor 38 domain containing A | ATP-binding cassette sub-family D member 370 kDa peroxisomal membrane proteinATP-binding cassette, sub-family D (ALD), member 3Peroxisomal membrane protein-1 (70kD)dJ824O18.1 (ATP-binding cassette, sub-family D (ALD), member 3 (PMP70, PXMP1))peroxiso | |
| Modification date | 20180522 | 20180519 | |
| UniProtAcc | Q8NAV1 | P28288 | |
| Ensembl transtripts involved in fusion gene | ENST00000257181, ENST00000474048, | ENST00000394233, ENST00000454898, ENST00000536817, ENST00000370214, ENST00000315713, ENST00000484213, | |
| Fusion gene scores | * DoF score | 2 X 2 X 2=8 | 4 X 3 X 4=48 |
| # samples | 2 | 4 | |
| ** MAII score | log2(2/8*10)=1.32192809488736 | log2(4/48*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: PRPF38A [Title/Abstract] AND ABCD3 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Tgene | ABCD3 | GO:0007031 | peroxisome organization | 9425230 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | SKCM | TCGA-EB-A551-01A | PRPF38A | chr1 | 52871511 | + | ABCD3 | chr1 | 94924163 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000257181 | ENST00000394233 | PRPF38A | chr1 | 52871511 | + | ABCD3 | chr1 | 94924163 | + |
| In-frame | ENST00000257181 | ENST00000454898 | PRPF38A | chr1 | 52871511 | + | ABCD3 | chr1 | 94924163 | + |
| 5CDS-intron | ENST00000257181 | ENST00000536817 | PRPF38A | chr1 | 52871511 | + | ABCD3 | chr1 | 94924163 | + |
| 5CDS-intron | ENST00000257181 | ENST00000370214 | PRPF38A | chr1 | 52871511 | + | ABCD3 | chr1 | 94924163 | + |
| 5CDS-intron | ENST00000257181 | ENST00000315713 | PRPF38A | chr1 | 52871511 | + | ABCD3 | chr1 | 94924163 | + |
| 5CDS-intron | ENST00000257181 | ENST00000484213 | PRPF38A | chr1 | 52871511 | + | ABCD3 | chr1 | 94924163 | + |
| intron-3CDS | ENST00000474048 | ENST00000394233 | PRPF38A | chr1 | 52871511 | + | ABCD3 | chr1 | 94924163 | + |
| intron-3CDS | ENST00000474048 | ENST00000454898 | PRPF38A | chr1 | 52871511 | + | ABCD3 | chr1 | 94924163 | + |
| intron-intron | ENST00000474048 | ENST00000536817 | PRPF38A | chr1 | 52871511 | + | ABCD3 | chr1 | 94924163 | + |
| intron-intron | ENST00000474048 | ENST00000370214 | PRPF38A | chr1 | 52871511 | + | ABCD3 | chr1 | 94924163 | + |
| intron-intron | ENST00000474048 | ENST00000315713 | PRPF38A | chr1 | 52871511 | + | ABCD3 | chr1 | 94924163 | + |
| intron-intron | ENST00000474048 | ENST00000484213 | PRPF38A | chr1 | 52871511 | + | ABCD3 | chr1 | 94924163 | + |
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FusionProtFeatures for PRPF38A_ABCD3 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| PRPF38A | ABCD3 |
| May be required for pre-mRNA splicing. {ECO:0000305}. | Probable transporter involved in the transport ofbranched-chain fatty acids and C27 bile acids into the peroxisome;the latter function is a crucial step in bile acid biosynthesis(PubMed:25168382). The nucleotide-binding fold acts as an ATP-binding subunit with ATPase activity (PubMed:11248239).{ECO:0000269|PubMed:11248239, ECO:0000269|PubMed:25168382}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | >ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000315713 | + | 0 | 9 | 440_659 | 36 | 237 | Domain | ABC transporter |
| Tgene | >ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000315713 | + | 0 | 9 | 85_372 | 36 | 237 | Domain | ABC transmembrane type-1 |
| Tgene | >ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000370214 | + | 0 | 23 | 440_659 | 36 | 660 | Domain | ABC transporter |
| Tgene | >ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000370214 | + | 0 | 23 | 85_372 | 36 | 660 | Domain | ABC transmembrane type-1 |
| Tgene | >ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000394233 | + | 0 | 19 | 440_659 | 36 | 550 | Domain | ABC transporter |
| Tgene | >ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000394233 | + | 0 | 19 | 85_372 | 36 | 550 | Domain | ABC transmembrane type-1 |
| Tgene | >ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000315713 | + | 0 | 9 | 473_480 | 36 | 237 | Nucleotide binding | ATP |
| Tgene | >ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000370214 | + | 0 | 23 | 473_480 | 36 | 660 | Nucleotide binding | ATP |
| Tgene | >ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000394233 | + | 0 | 19 | 473_480 | 36 | 550 | Nucleotide binding | ATP |
| Tgene | >ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000315713 | + | 0 | 9 | 126_146 | 36 | 237 | Transmembrane | Helical |
| Tgene | >ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000315713 | + | 0 | 9 | 224_244 | 36 | 237 | Transmembrane | Helical |
| Tgene | >ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000315713 | + | 0 | 9 | 313_333 | 36 | 237 | Transmembrane | Helical |
| Tgene | >ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000315713 | + | 0 | 9 | 84_104 | 36 | 237 | Transmembrane | Helical |
| Tgene | >ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000370214 | + | 0 | 23 | 126_146 | 36 | 660 | Transmembrane | Helical |
| Tgene | >ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000370214 | + | 0 | 23 | 224_244 | 36 | 660 | Transmembrane | Helical |
| Tgene | >ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000370214 | + | 0 | 23 | 313_333 | 36 | 660 | Transmembrane | Helical |
| Tgene | >ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000370214 | + | 0 | 23 | 84_104 | 36 | 660 | Transmembrane | Helical |
| Tgene | >ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000394233 | + | 0 | 19 | 126_146 | 36 | 550 | Transmembrane | Helical |
| Tgene | >ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000394233 | + | 0 | 19 | 224_244 | 36 | 550 | Transmembrane | Helical |
| Tgene | >ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000394233 | + | 0 | 19 | 313_333 | 36 | 550 | Transmembrane | Helical |
| Tgene | >ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000394233 | + | 0 | 19 | 84_104 | 36 | 550 | Transmembrane | Helical |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | >PRPF38A | chr1:52871511 | chr1:94924163 | ENST00000257181 | + | 2 | 10 | 170_204 | 96 | 313 | Coiled coil | Ontology_term=ECO:0000255 |
| Hgene | >PRPF38A | chr1:52871511 | chr1:94924163 | ENST00000257181 | + | 2 | 10 | 213_291 | 96 | 313 | Compositional bias | Note=Arg-rich |
| Tgene | ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000315713 | + | 0 | 9 | 1_124 | 36 | 237 | Region | Note=Targeting to peroxisomes |
| Tgene | ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000370214 | + | 0 | 23 | 1_124 | 36 | 660 | Region | Note=Targeting to peroxisomes |
| Tgene | ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000394233 | + | 0 | 19 | 1_124 | 36 | 550 | Region | Note=Targeting to peroxisomes |
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FusionGeneSequence for PRPF38A_ABCD3 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_PRPF38A_ENST00000257181_chr1_52871511_+_ABCD3_ENST00000394233_chr1_94924163_+_610aa MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEF IKNEDFNKKSGKPPLQNNEKEGKKERAVVDKVFFSRLIQILKIMVPRTFCKETGYLVLIAVMLVSRTYCDVWMIQNGTLIESGIIGRSRK DFKRYLLNFIAAMPLISLVNNFLKYGLNELKLCFRVRLTKYLYEEYLQAFTYYKMGNLDNRIANPDQLLTQDVEKFCNSVVDLYSNLSKP FLDIVLYIFKLTSAIGAQGPASMMAYLVVSGLFLTRLRRPIGKMTITEQKYEGEYRYVNSRLITNSFTARITELMQVLKDLNHGKYERTM VSQQEKGIEGVQVIPLIPGAGEIIIADNIIKFDHVPLATPNGDVLIRDLNFEVRSGANVLICGPNGCGKSSLFRVLGELWPLFGGRLTKP ERGKLFYVPQRPYMTLGTLRDQVIYPDGREDQKRKGISDLVLKEYLDNVQLGHILEREGGWDSVQDWMDVLSGGEKQRMAMARLFYHKPQ >In-frame_PRPF38A_ENST00000257181_chr1_52871511_+_ABCD3_ENST00000454898_chr1_94924163_+_720aa MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEF IKNEDFNKKSGKPPLQNNEKEGKKERAVVDKVFFSRLIQILKIMVPRTFCKETGYLVLIAVMLVSRTYCDVWMIQNGTLIESGIIGRSRK DFKRYLLNFIAAMPLISLVNNFLKYGLNELKLCFRVRLTKYLYEEYLQAFTYYKMGNLDNRIANPDQLLTQDVEKFCNSVVDLYSNLSKP FLDIVLYIFKLTSAIGAQGPASMMAYLVVSGLFLTRLRRPIGKMTITEQKYEGEYRYVNSRLITNSEEIAFYNGNKREKQTVHSVFRKLV EHLHNFILFRFSMGFIDSIIAKYLATVVGYLVVSRPFLDLSHPRHLKSTHSELLEDYYQSGRMLLRMSQALGRIVLAGREMTRLAGFTAR ITELMQVLKDLNHGKYERTMVSQQEKGIEGVQVIPLIPGAGEIIIADNIIKFDHVPLATPNGDVLIRDLNFEVRSGANVLICGPNGCGKS SLFRVLGELWPLFGGRLTKPERGKLFYVPQRPYMTLGTLRDQVIYPDGREDQKRKGISDLVLKEYLDNVQLGHILEREGGWDSVQDWMDV LSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVEGYIYSHCRKVGITLFTVSHRKSLWKHHEYYLHMDGRGNYEFKQITEDTVEFGSX |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_PRPF38A_ENST00000257181_chr1_52871511_+_ABCD3_ENST00000394233_chr1_94924163_+_1830nt ATGGCTAACCGTACAGTGAAGGATGCGCACAGCATCCATGGCACCAACCCTCAATATCTGGTGGAGAAGATCATTCGAACGCGAATCTAT GAGTCCAAGTACTGGAAAGAGGAGTGCTTTGGACTTACAGCTGAACTTGTAGTCGATAAAGCCATGGAGTTAAGGTTTGTGGGTGGCGTC TATGGTGGCAACATAAAACCAACACCCTTTCTGTGTTTAACCTTGAAGATGCTTCAAATTCAACCCGAGAAGGATATCATTGTAGAGTTT ATCAAAAATGAAGATTTCAATAAGAAAAGTGGAAAACCACCATTACAGAACAATGAGAAAGAGGGGAAAAAGGAGCGAGCTGTGGTGGAC AAGGTGTTTTTCTCAAGGCTCATACAGATTCTGAAAATCATGGTCCCTAGAACATTTTGTAAAGAGACAGGTTACTTGGTACTTATTGCT GTTATGCTGGTGTCTCGAACATATTGTGATGTTTGGATGATTCAAAATGGGACACTAATTGAAAGTGGTATCATTGGTCGTAGCAGGAAA GATTTCAAGAGATACTTACTCAACTTCATCGCTGCCATGCCTCTTATCTCTCTGGTTAATAACTTCTTGAAGTATGGGTTAAATGAGCTT AAACTGTGCTTCCGAGTAAGGCTCACTAAATACCTCTATGAGGAGTATCTTCAAGCTTTCACATATTATAAAATGGGGAATCTGGACAAC AGAATAGCTAATCCAGACCAGCTGCTTACACAAGATGTAGAAAAATTTTGTAACAGTGTAGTCGATCTGTATTCAAATCTTAGTAAGCCA TTTTTAGACATAGTTTTGTATATCTTTAAGTTAACGAGTGCAATTGGAGCTCAGGGCCCAGCGAGCATGATGGCCTACTTGGTTGTTTCT GGGCTATTCCTAACTCGACTTCGAAGACCCATTGGTAAGATGACAATAACTGAGCAAAAGTATGAAGGAGAATATAGATATGTTAATTCT CGGCTCATCACAAACAGTTTTACTGCTCGGATTACAGAATTAATGCAAGTACTGAAGGATTTAAATCATGGCAAATATGAGCGCACAATG GTCTCACAACAGGAAAAGGGTATTGAAGGAGTACAAGTCATTCCCTTGATACCTGGTGCTGGAGAAATCATTATTGCAGATAACATTATA AAGTTTGATCATGTTCCTTTAGCAACGCCAAATGGAGATGTTTTGATCCGAGACCTTAATTTTGAAGTTCGATCTGGGGCTAATGTTCTA ATTTGTGGTCCAAATGGCTGCGGAAAGAGTTCACTTTTCCGTGTTCTTGGTGAATTATGGCCTCTTTTTGGAGGACGTCTAACTAAACCT GAAAGAGGAAAATTATTTTATGTTCCTCAGAGACCTTACATGACCCTTGGAACACTTCGAGATCAAGTGATATATCCAGATGGACGAGAA GATCAGAAAAGGAAGGGAATTTCTGACCTAGTACTGAAGGAATACTTAGACAATGTCCAGTTGGGTCATATCCTTGAACGTGAAGGAGGC TGGGACAGTGTTCAGGATTGGATGGACGTACTCAGTGGTGGAGAAAAGCAAAGAATGGCGATGGCAAGATTATTTTATCATAAACCCCAG TTTGCCATTTTGGATGAATGCACAAGTGCAGTTAGTGTCGACGTGGAAGGCTACATTTATAGTCATTGTCGAAAGGTTGGCATCACTCTC TTCACTGTGTCTCATAGGAAATCTCTTTGGAAACATCATGAGTACTACCTGCATATGGATGGCAGAGGCAACTATGAATTCAAACAGATA >In-frame_PRPF38A_ENST00000257181_chr1_52871511_+_ABCD3_ENST00000454898_chr1_94924163_+_2160nt ATGGCTAACCGTACAGTGAAGGATGCGCACAGCATCCATGGCACCAACCCTCAATATCTGGTGGAGAAGATCATTCGAACGCGAATCTAT GAGTCCAAGTACTGGAAAGAGGAGTGCTTTGGACTTACAGCTGAACTTGTAGTCGATAAAGCCATGGAGTTAAGGTTTGTGGGTGGCGTC TATGGTGGCAACATAAAACCAACACCCTTTCTGTGTTTAACCTTGAAGATGCTTCAAATTCAACCCGAGAAGGATATCATTGTAGAGTTT ATCAAAAATGAAGATTTCAATAAGAAAAGTGGAAAACCACCATTACAGAACAATGAGAAAGAGGGGAAAAAGGAGCGAGCTGTGGTGGAC AAGGTGTTTTTCTCAAGGCTCATACAGATTCTGAAAATCATGGTCCCTAGAACATTTTGTAAAGAGACAGGTTACTTGGTACTTATTGCT GTTATGCTGGTGTCTCGAACATATTGTGATGTTTGGATGATTCAAAATGGGACACTAATTGAAAGTGGTATCATTGGTCGTAGCAGGAAA GATTTCAAGAGATACTTACTCAACTTCATCGCTGCCATGCCTCTTATCTCTCTGGTTAATAACTTCTTGAAGTATGGGTTAAATGAGCTT AAACTGTGCTTCCGAGTAAGGCTCACTAAATACCTCTATGAGGAGTATCTTCAAGCTTTCACATATTATAAAATGGGGAATCTGGACAAC AGAATAGCTAATCCAGACCAGCTGCTTACACAAGATGTAGAAAAATTTTGTAACAGTGTAGTCGATCTGTATTCAAATCTTAGTAAGCCA TTTTTAGACATAGTTTTGTATATCTTTAAGTTAACGAGTGCAATTGGAGCTCAGGGCCCAGCGAGCATGATGGCCTACTTGGTTGTTTCT GGGCTATTCCTAACTCGACTTCGAAGACCCATTGGTAAGATGACAATAACTGAGCAAAAGTATGAAGGAGAATATAGATATGTTAATTCT CGGCTCATCACAAACAGTGAAGAAATTGCCTTTTACAATGGGAATAAAAGAGAAAAGCAGACAGTCCACTCAGTCTTCCGAAAACTGGTG GAACACCTACATAATTTCATTTTGTTTCGGTTTTCAATGGGCTTCATTGATAGTATTATTGCCAAATACCTTGCCACTGTTGTTGGTTAC CTAGTTGTCAGTCGCCCTTTCTTAGATTTGTCTCATCCTCGACATCTCAAGAGTACACATTCGGAACTTCTAGAGGATTACTACCAAAGT GGAAGAATGCTTTTGCGAATGTCTCAAGCTCTGGGTCGAATAGTTTTGGCTGGGCGTGAAATGACTAGATTGGCCGGTTTTACTGCTCGG ATTACAGAATTAATGCAAGTACTGAAGGATTTAAATCATGGCAAATATGAGCGCACAATGGTCTCACAACAGGAAAAGGGTATTGAAGGA GTACAAGTCATTCCCTTGATACCTGGTGCTGGAGAAATCATTATTGCAGATAACATTATAAAGTTTGATCATGTTCCTTTAGCAACGCCA AATGGAGATGTTTTGATCCGAGACCTTAATTTTGAAGTTCGATCTGGGGCTAATGTTCTAATTTGTGGTCCAAATGGCTGCGGAAAGAGT TCACTTTTCCGTGTTCTTGGTGAATTATGGCCTCTTTTTGGAGGACGTCTAACTAAACCTGAAAGAGGAAAATTATTTTATGTTCCTCAG AGACCTTACATGACCCTTGGAACACTTCGAGATCAAGTGATATATCCAGATGGACGAGAAGATCAGAAAAGGAAGGGAATTTCTGACCTA GTACTGAAGGAATACTTAGACAATGTCCAGTTGGGTCATATCCTTGAACGTGAAGGAGGCTGGGACAGTGTTCAGGATTGGATGGACGTA CTCAGTGGTGGAGAAAAGCAAAGAATGGCGATGGCAAGATTATTTTATCATAAACCCCAGTTTGCCATTTTGGATGAATGCACAAGTGCA GTTAGTGTCGACGTGGAAGGCTACATTTATAGTCATTGTCGAAAGGTTGGCATCACTCTCTTCACTGTGTCTCATAGGAAATCTCTTTGG AAACATCATGAGTACTACCTGCATATGGATGGCAGAGGCAACTATGAATTCAAACAGATAACAGAAGATACAGTTGAGTTTGGCTCTTAG |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_PRPF38A_ENST00000257181_chr1_52871511_+_ABCD3_ENST00000394233_chr1_94924163_+_3550nt ATTGATTCGATAGGCGACGCGGGGAGCGGAAGCCCTTTACACTACGGTGTTTCCGGCTTCAAGATGGTCGCCTAAGCTGTTTAGTGAAAC TTCTTCCACCTTTCTCCATTCCTCTAGGTGCTTTTTCTGAACCTGGATGTGAGGCATTAAAGGATCCGACGGAAATAGAATTGAAGGCAT TCTAAAATGGCTAACCGTACAGTGAAGGATGCGCACAGCATCCATGGCACCAACCCTCAATATCTGGTGGAGAAGATCATTCGAACGCGA ATCTATGAGTCCAAGTACTGGAAAGAGGAGTGCTTTGGACTTACAGCTGAACTTGTAGTCGATAAAGCCATGGAGTTAAGGTTTGTGGGT GGCGTCTATGGTGGCAACATAAAACCAACACCCTTTCTGTGTTTAACCTTGAAGATGCTTCAAATTCAACCCGAGAAGGATATCATTGTA GAGTTTATCAAAAATGAAGATTTCAATAAGAAAAGTGGAAAACCACCATTACAGAACAATGAGAAAGAGGGGAAAAAGGAGCGAGCTGTG GTGGACAAGGTGTTTTTCTCAAGGCTCATACAGATTCTGAAAATCATGGTCCCTAGAACATTTTGTAAAGAGACAGGTTACTTGGTACTT ATTGCTGTTATGCTGGTGTCTCGAACATATTGTGATGTTTGGATGATTCAAAATGGGACACTAATTGAAAGTGGTATCATTGGTCGTAGC AGGAAAGATTTCAAGAGATACTTACTCAACTTCATCGCTGCCATGCCTCTTATCTCTCTGGTTAATAACTTCTTGAAGTATGGGTTAAAT GAGCTTAAACTGTGCTTCCGAGTAAGGCTCACTAAATACCTCTATGAGGAGTATCTTCAAGCTTTCACATATTATAAAATGGGGAATCTG GACAACAGAATAGCTAATCCAGACCAGCTGCTTACACAAGATGTAGAAAAATTTTGTAACAGTGTAGTCGATCTGTATTCAAATCTTAGT AAGCCATTTTTAGACATAGTTTTGTATATCTTTAAGTTAACGAGTGCAATTGGAGCTCAGGGCCCAGCGAGCATGATGGCCTACTTGGTT GTTTCTGGGCTATTCCTAACTCGACTTCGAAGACCCATTGGTAAGATGACAATAACTGAGCAAAAGTATGAAGGAGAATATAGATATGTT AATTCTCGGCTCATCACAAACAGTTTTACTGCTCGGATTACAGAATTAATGCAAGTACTGAAGGATTTAAATCATGGCAAATATGAGCGC ACAATGGTCTCACAACAGGAAAAGGGTATTGAAGGAGTACAAGTCATTCCCTTGATACCTGGTGCTGGAGAAATCATTATTGCAGATAAC ATTATAAAGTTTGATCATGTTCCTTTAGCAACGCCAAATGGAGATGTTTTGATCCGAGACCTTAATTTTGAAGTTCGATCTGGGGCTAAT GTTCTAATTTGTGGTCCAAATGGCTGCGGAAAGAGTTCACTTTTCCGTGTTCTTGGTGAATTATGGCCTCTTTTTGGAGGACGTCTAACT AAACCTGAAAGAGGAAAATTATTTTATGTTCCTCAGAGACCTTACATGACCCTTGGAACACTTCGAGATCAAGTGATATATCCAGATGGA CGAGAAGATCAGAAAAGGAAGGGAATTTCTGACCTAGTACTGAAGGAATACTTAGACAATGTCCAGTTGGGTCATATCCTTGAACGTGAA GGAGGCTGGGACAGTGTTCAGGATTGGATGGACGTACTCAGTGGTGGAGAAAAGCAAAGAATGGCGATGGCAAGATTATTTTATCATAAA CCCCAGTTTGCCATTTTGGATGAATGCACAAGTGCAGTTAGTGTCGACGTGGAAGGCTACATTTATAGTCATTGTCGAAAGGTTGGCATC ACTCTCTTCACTGTGTCTCATAGGAAATCTCTTTGGAAACATCATGAGTACTACCTGCATATGGATGGCAGAGGCAACTATGAATTCAAA CAGATAACAGAAGATACAGTTGAGTTTGGCTCTTAGAGAAATCTGGAGAACTATACCTGCTTCAGTGAAATAATTACAGAATATACTTAG AAAGGCAAAGTACATTGTAAAATAAAGTTGAGCTTAGTTTTTTTTAAAAAAAAAAACAAAGCAACAAATTAACTAGATACAGAATAATGG AGAACAAGTTGTTAAAACATTTAATATTATATAGGATATTGCTAATTGTGTATATGTTGGTTTAATTAATAATATGTACTAAGAATGTCC TTATTCTTGTGGTTAAAAACCTGCCTAAATTAAATTGGGCTTCAATCACTGTAACCTGATTCATCCTGGGATGTAAACCATTCGAAGTCA GCTAATTGGACTTTTATGGCTCTATCTTTTCCTTCAGTGAAGAACCCTATTTAAAACTGGGTCATCATTTGTCCTGTTCTAGCAAGATAG TCTTCAGTTTCATTTTCCTGTGCCCTGTGGTAGTTGGAAACAAATCATAATGTATTATTTAAATGTTTAACATCATTGCATAACAGCGTT TATTATACAGTGGCAGATTTCTTTAGCTGCCACAGTAATACTCATTCCTTGTGTGTGTCTTGGAGTGCATTTGACTCCAGGAAAAGCCAT TTTGGTTTTCCTTAACTAAATGATAAATGTACCCCTCTCAGTCTGCAGTATTGAGTTGTTTAAAGTATATGTGCAGTCTTGCTTACAAGG AGGGGTTACCATGTATCACACCTAATCTTCCCAATGTTTGGGATATTAAAACACAAAGTCCTTAACATGCCAGGCTCAAGGTCTTATAAG AGTTCTAGATTTTTAAGAGAATTAGACAAATTTGTGTGTGTTAGAAGCCCATTCATTAGAAGTGTGGTGGTTATTTGGTATTAAACTCCA AATGAGCCATAGGAAGGCACTACATGAAATAATGCACTGAGTATGCAATGCTATCACTGTCTTTGACTGTGATTTTATGTTTAAAAAGTA TGTTCTAAAATTATTATATATACATGGGTGAATTATGTTTCCGAGGCACTGTTTTATCTCTGTGAATCTTGAATAACTTTTTTATATTTG GGTTATGATGTCAAACGATCCTAAGCGAAGATGATTTCAGTTCATCAAATCATCATTAATGACTTTATGTATTATTTGCACAGGGAGAAT TGAAACTGAGTATAATCAATAAGCTAGATACGAAATCAGTTTCTCAAACTGAGCTTCAGAAAGGGGCATTTTGTACTCTTGTTTTTGCAT AACTGGTTTTGTTTTTTTGCAGAATTAACTATAACAATCACTGGCTACCGAAGTAAACTGATGTACTGAATTCCATAATACATAACATTC AATTTTTACCACTTCTGTTTAGCGAACTTGTATACTTATTTTCTGTTCAGATTAAAAAAAAAAAAAAAAAACTCAGATATCCTATACAAC CTTTGCTTGTTCTTTTTATTCTGGTATCTAAATACTGAGAAGTTCATTTATAATTCAGCCTTGACTTGAAAACATAGATAGTTTAATCTT >In-frame_PRPF38A_ENST00000257181_chr1_52871511_+_ABCD3_ENST00000454898_chr1_94924163_+_2497nt ATTGATTCGATAGGCGACGCGGGGAGCGGAAGCCCTTTACACTACGGTGTTTCCGGCTTCAAGATGGTCGCCTAAGCTGTTTAGTGAAAC TTCTTCCACCTTTCTCCATTCCTCTAGGTGCTTTTTCTGAACCTGGATGTGAGGCATTAAAGGATCCGACGGAAATAGAATTGAAGGCAT TCTAAAATGGCTAACCGTACAGTGAAGGATGCGCACAGCATCCATGGCACCAACCCTCAATATCTGGTGGAGAAGATCATTCGAACGCGA ATCTATGAGTCCAAGTACTGGAAAGAGGAGTGCTTTGGACTTACAGCTGAACTTGTAGTCGATAAAGCCATGGAGTTAAGGTTTGTGGGT GGCGTCTATGGTGGCAACATAAAACCAACACCCTTTCTGTGTTTAACCTTGAAGATGCTTCAAATTCAACCCGAGAAGGATATCATTGTA GAGTTTATCAAAAATGAAGATTTCAATAAGAAAAGTGGAAAACCACCATTACAGAACAATGAGAAAGAGGGGAAAAAGGAGCGAGCTGTG GTGGACAAGGTGTTTTTCTCAAGGCTCATACAGATTCTGAAAATCATGGTCCCTAGAACATTTTGTAAAGAGACAGGTTACTTGGTACTT ATTGCTGTTATGCTGGTGTCTCGAACATATTGTGATGTTTGGATGATTCAAAATGGGACACTAATTGAAAGTGGTATCATTGGTCGTAGC AGGAAAGATTTCAAGAGATACTTACTCAACTTCATCGCTGCCATGCCTCTTATCTCTCTGGTTAATAACTTCTTGAAGTATGGGTTAAAT GAGCTTAAACTGTGCTTCCGAGTAAGGCTCACTAAATACCTCTATGAGGAGTATCTTCAAGCTTTCACATATTATAAAATGGGGAATCTG GACAACAGAATAGCTAATCCAGACCAGCTGCTTACACAAGATGTAGAAAAATTTTGTAACAGTGTAGTCGATCTGTATTCAAATCTTAGT AAGCCATTTTTAGACATAGTTTTGTATATCTTTAAGTTAACGAGTGCAATTGGAGCTCAGGGCCCAGCGAGCATGATGGCCTACTTGGTT GTTTCTGGGCTATTCCTAACTCGACTTCGAAGACCCATTGGTAAGATGACAATAACTGAGCAAAAGTATGAAGGAGAATATAGATATGTT AATTCTCGGCTCATCACAAACAGTGAAGAAATTGCCTTTTACAATGGGAATAAAAGAGAAAAGCAGACAGTCCACTCAGTCTTCCGAAAA CTGGTGGAACACCTACATAATTTCATTTTGTTTCGGTTTTCAATGGGCTTCATTGATAGTATTATTGCCAAATACCTTGCCACTGTTGTT GGTTACCTAGTTGTCAGTCGCCCTTTCTTAGATTTGTCTCATCCTCGACATCTCAAGAGTACACATTCGGAACTTCTAGAGGATTACTAC CAAAGTGGAAGAATGCTTTTGCGAATGTCTCAAGCTCTGGGTCGAATAGTTTTGGCTGGGCGTGAAATGACTAGATTGGCCGGTTTTACT GCTCGGATTACAGAATTAATGCAAGTACTGAAGGATTTAAATCATGGCAAATATGAGCGCACAATGGTCTCACAACAGGAAAAGGGTATT GAAGGAGTACAAGTCATTCCCTTGATACCTGGTGCTGGAGAAATCATTATTGCAGATAACATTATAAAGTTTGATCATGTTCCTTTAGCA ACGCCAAATGGAGATGTTTTGATCCGAGACCTTAATTTTGAAGTTCGATCTGGGGCTAATGTTCTAATTTGTGGTCCAAATGGCTGCGGA AAGAGTTCACTTTTCCGTGTTCTTGGTGAATTATGGCCTCTTTTTGGAGGACGTCTAACTAAACCTGAAAGAGGAAAATTATTTTATGTT CCTCAGAGACCTTACATGACCCTTGGAACACTTCGAGATCAAGTGATATATCCAGATGGACGAGAAGATCAGAAAAGGAAGGGAATTTCT GACCTAGTACTGAAGGAATACTTAGACAATGTCCAGTTGGGTCATATCCTTGAACGTGAAGGAGGCTGGGACAGTGTTCAGGATTGGATG GACGTACTCAGTGGTGGAGAAAAGCAAAGAATGGCGATGGCAAGATTATTTTATCATAAACCCCAGTTTGCCATTTTGGATGAATGCACA AGTGCAGTTAGTGTCGACGTGGAAGGCTACATTTATAGTCATTGTCGAAAGGTTGGCATCACTCTCTTCACTGTGTCTCATAGGAAATCT CTTTGGAAACATCATGAGTACTACCTGCATATGGATGGCAGAGGCAACTATGAATTCAAACAGATAACAGAAGATACAGTTGAGTTTGGC TCTTAGAGAAATCTGGAGAACTATACCTGCTTCAGTGAAATAATTACAGAATATACTTAGAAAGGCAAAGTACATTGTAAAATAAAGTTG |
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FusionGenePPI for PRPF38A_ABCD3 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| PRPF38A | GTF3C1, POLA2, MAPK6, JMJD6, APP, U2AF1, CHERP, RBM39, SRSF3, PRPF38A, DHX8, RNPS1, PPIG, SRSF4, ZCCHC10, SRPK1, SRPK2, CSNK2A1, PRMT5, CLK2, SDCBP, SDCBP2, EED, SEC13, MFAP1, CSNK2B, IFI16, CLK1, XPO1, CDC14B, C11orf57, KIAA1161, RPS13, E2F5, HIST1H2BO, SRSF5, TP53BP1, SRSF6, SPAG1, WDR70, C12orf45, AP3B1, CFAP20, DNAAF2, TSSC4, DLST, PDHA1 | ABCD3 | C20orf24, PTP4A3, PELO, MLF2, MEST, PGRMC1, BRF2, ABCD1, PEX19, USP50, USP32, CLN3, CUL3, PEX3, NDUFV1, MPV17, TAP1, ATP6V1C1, AGPS, NNT, SURF1, SYNJ2BP, MRPL41, ZNF454, TIMMDC1, NDUFB11, NDUFS4, TOMM40, ECT2, MDC1, PEX14, MMS19, TUFT1, PSMA1, DYRK1B, DYRK1A, HIPK4, MOV10, NXF1, OBSL1, RNF2, EGFR, FAF2, SLC39A4, UNK, NTRK1, DHX9, EEF2, BTRC, PCM1, TMEM67, KRAS, PTPN1, RAB7A, VAPA, GOLT1B, TMEM63B, FAM134A, MYH14, COQ9, NDUFA4, C15orf48, OCIAD1, ZNF746, CTDNEP1, TPTE, STOM, PDHA1, TRIM25, UBE2A |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| Tgene | ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000315713 | + | 0 | 9 | 1_199 | 36 | 237 | PEX19 |
| Tgene | ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000370214 | + | 0 | 23 | 1_199 | 36 | 660 | PEX19 |
| Tgene | ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000394233 | + | 0 | 19 | 1_199 | 36 | 550 | PEX19 |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for PRPF38A_ABCD3 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PRPF38A_ABCD3 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Tgene | ABCD3 | C0009404 | Colorectal Neoplasms | 1 | CTD_human |
| Tgene | ABCD3 | C0043459 | Zellweger Syndrome | 1 | CTD_human |
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