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Fusion gene ID: 28853 |
FusionGeneSummary for PRPF18_CDC123 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: PRPF18_CDC123 | Fusion gene ID: 28853 | Hgene | Tgene | Gene symbol | PRPF18 | CDC123 | Gene ID | 8559 | 8872 |
| Gene name | pre-mRNA processing factor 18 | cell division cycle 123 | |
| Synonyms | PRP18|hPrp18 | C10orf7|D123 | |
| Cytomap | 10p13 | 10p14-p13 | |
| Type of gene | protein-coding | protein-coding | |
| Description | pre-mRNA-splicing factor 18PRP18 homologPRP18 pre-mRNA processing factor 18 homologPRP18 pre-mRNA processing factor 18 homolog(PRPF18) | cell division cycle protein 123 homologHT-1080PZ32cell division cycle 123 homolog | |
| Modification date | 20180523 | 20180523 | |
| UniProtAcc | Q99633 | O75794 | |
| Ensembl transtripts involved in fusion gene | ENST00000378572, | ENST00000281141, ENST00000455773, ENST00000378900, | |
| Fusion gene scores | * DoF score | 4 X 4 X 3=48 | 2 X 2 X 2=8 |
| # samples | 4 | 2 | |
| ** MAII score | log2(4/48*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(2/8*10)=1.32192809488736 | |
| Context | PubMed: PRPF18 [Title/Abstract] AND CDC123 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS3.1 | BM798006 | PRPF18 | chr10 | 13642349 | + | CDC123 | chr10 | 12257737 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000378572 | ENST00000281141 | PRPF18 | chr10 | 13642349 | + | CDC123 | chr10 | 12257737 | + |
| 5CDS-3UTR | ENST00000378572 | ENST00000455773 | PRPF18 | chr10 | 13642349 | + | CDC123 | chr10 | 12257737 | + |
| 5CDS-3UTR | ENST00000378572 | ENST00000378900 | PRPF18 | chr10 | 13642349 | + | CDC123 | chr10 | 12257737 | + |
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FusionProtFeatures for PRPF18_CDC123 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| PRPF18 | CDC123 |
| Participates in the second step of pre-mRNA splicing.{ECO:0000269|PubMed:9000057}. | Required for S phase entry of the cell cycle.{ECO:0000250}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for PRPF18_CDC123 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_PRPF18_ENST00000378572_chr10_13642349_+_CDC123_ENST00000281141_chr10_12257737_+_341aa MDILKSEILRKRQLVEDRNLLVENKKTFKRSELAKKEEEATFERCGYKIQPKEEDQKPLTSSNPVLELELAEEKLPMTLSRQEAPEFPEF ATKVQEAINSLGGSVFPKLNWSAPRDATWIAMNSSLKCKTLSDIFLLFKSSDFITRDFTQPFIHCTDDSPDPCIETELVLRKWCELIPGA EFRCFVKENKLIGISQRDYTQYTDHISKQKEEIRRCIQDFFKKHIQYKFLDEDFVFDIYRDSRGKVWLIDFNPFGEVTDSLLFTWEELIS |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_PRPF18_ENST00000378572_chr10_13642349_+_CDC123_ENST00000281141_chr10_12257737_+_1023nt ATGGACATTCTGAAATCAGAGATCCTTCGGAAGCGGCAGCTGGTGGAGGACAGGAACCTGCTGGTGGAAAATAAAAAATATTTCAAGCGT AGTGAGCTCGCCAAAAAAGAAGAGGAAGCATATTTTGAAAGATGTGGCTACAAGATACAGCCAAAAGAGGAGGACCAGAAACCATTAACT TCATCGAATCCAGTGTTAGAACTTGAACTGGCAGAGGAAAAATTACCTATGACGCTTTCTAGGCAAGAGGCACCAGAATTTCCTGAGTTT GCCACTAAAGTCCAGGAAGCTATCAATTCCCTCGGGGGCAGTGTCTTTCCTAAGCTTAATTGGAGTGCCCCAAGGGATGCGTATTGGATA GCAATGAATAGTTCTCTGAAATGTAAAACCCTCAGCGACATCTTTCTGCTTTTCAAGAGTTCCGATTTCATCACTCGTGACTTCACTCAG CCGTTTATTCATTGTACTGATGATTCTCCAGATCCATGTATAGAATATGAGCTCGTTCTCCGAAAATGGTGTGAATTGATTCCTGGGGCT GAGTTTCGATGTTTTGTCAAGGAAAACAAGCTTATTGGTATTTCTCAAAGAGACTACACACAATACTATGATCATATTTCTAAACAAAAG GAAGAAATTCGCAGATGCATACAAGACTTTTTCAAGAAACACATACAGTACAAATTCTTAGATGAAGACTTTGTGTTCGATATATACAGA GACAGTAGGGGGAAGGTGTGGCTCATTGACTTTAATCCATTTGGTGAAGTCACAGATTCACTGCTGTTCACCTGGGAAGAACTGATATCT GAGAACAACTTAAACGGCGATTTTAGTGAAGTTGACGCTCAAGAGCAGGATTCCCCAGCTTTCCGTTGCACAAACAGTGAAGTGACAGTC CAGCCCAGCCCCTATTTGAGTTACCGGCTACCCAAGGACTTTGTAGACCTCTCTACTGGGGAGGACGCTCACAAGCTAATAGACTTCCTT |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_PRPF18_ENST00000378572_chr10_13642349_+_CDC123_ENST00000281141_chr10_12257737_+_1434nt CTCTCTCATCCCAGCTTCCGCCGGAAGCGGCTCCTGTCAGTTGTTCTCAGGTGTTTGGGCTTGTTGTTCCGTATACTCAGTGGGTTCGCG GCCGCCGGCCCAGTGAGGCTGGGTTCGAGGAGCTGGAGCGGGAAACTGGAGCTTAAATTCTGGCGGCGAGATGGACATTCTGAAATCAGA GATCCTTCGGAAGCGGCAGCTGGTGGAGGACAGGAACCTGCTGGTGGAAAATAAAAAATATTTCAAGCGTAGTGAGCTCGCCAAAAAAGA AGAGGAAGCATATTTTGAAAGATGTGGCTACAAGATACAGCCAAAAGAGGAGGACCAGAAACCATTAACTTCATCGAATCCAGTGTTAGA ACTTGAACTGGCAGAGGAAAAATTACCTATGACGCTTTCTAGGCAAGAGGCACCAGAATTTCCTGAGTTTGCCACTAAAGTCCAGGAAGC TATCAATTCCCTCGGGGGCAGTGTCTTTCCTAAGCTTAATTGGAGTGCCCCAAGGGATGCGTATTGGATAGCAATGAATAGTTCTCTGAA ATGTAAAACCCTCAGCGACATCTTTCTGCTTTTCAAGAGTTCCGATTTCATCACTCGTGACTTCACTCAGCCGTTTATTCATTGTACTGA TGATTCTCCAGATCCATGTATAGAATATGAGCTCGTTCTCCGAAAATGGTGTGAATTGATTCCTGGGGCTGAGTTTCGATGTTTTGTCAA GGAAAACAAGCTTATTGGTATTTCTCAAAGAGACTACACACAATACTATGATCATATTTCTAAACAAAAGGAAGAAATTCGCAGATGCAT ACAAGACTTTTTCAAGAAACACATACAGTACAAATTCTTAGATGAAGACTTTGTGTTCGATATATACAGAGACAGTAGGGGGAAGGTGTG GCTCATTGACTTTAATCCATTTGGTGAAGTCACAGATTCACTGCTGTTCACCTGGGAAGAACTGATATCTGAGAACAACTTAAACGGCGA TTTTAGTGAAGTTGACGCTCAAGAGCAGGATTCCCCAGCTTTCCGTTGCACAAACAGTGAAGTGACAGTCCAGCCCAGCCCCTATTTGAG TTACCGGCTACCCAAGGACTTTGTAGACCTCTCTACTGGGGAGGACGCTCACAAGCTAATAGACTTCCTTAAGCTGAAGAGAAATCAGCA GGAGGACGACTGATGAGCGTACTGGAACTGGAGAAGAGGAGGCCCCGCCCCACCGCTCCGGGAGCTGCTCATCAGCCGCAACTTCCTGCC GACCCTGATGCGGGTGGGCCGAGCAGTGTGGACATCAGCCACTTTTTATATTCATGTACATTCACCTGGGGAAAAAAACGGAGGGACTTT |
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FusionGenePPI for PRPF18_CDC123 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| PRPF18 | LSM4, GTF2B, YWHAZ, RHOU | CDC123 | LOC255308, TPM3, ZPR1, ABI1, ZNF512B, EIF2S2, HSPB1, PCM1, CEP120, CEP128, ODF2, CEP19, XPO1, TRIM25 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for PRPF18_CDC123 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PRPF18_CDC123 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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