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Fusion gene ID: 28852 |
FusionGeneSummary for PRPF18_CCDC3 |
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Fusion gene information | Fusion gene name: PRPF18_CCDC3 | Fusion gene ID: 28852 | Hgene | Tgene | Gene symbol | PRPF18 | CCDC3 | Gene ID | 8559 | 83643 |
Gene name | pre-mRNA processing factor 18 | coiled-coil domain containing 3 | |
Synonyms | PRP18|hPrp18 | - | |
Cytomap | 10p13 | 10p13 | |
Type of gene | protein-coding | protein-coding | |
Description | pre-mRNA-splicing factor 18PRP18 homologPRP18 pre-mRNA processing factor 18 homologPRP18 pre-mRNA processing factor 18 homolog(PRPF18) | coiled-coil domain-containing protein 3fat/vessel-derived secretory proteinfavine | |
Modification date | 20180523 | 20180329 | |
UniProtAcc | Q99633 | Q9BQI4 | |
Ensembl transtripts involved in fusion gene | ENST00000378572, | ENST00000378825, ENST00000378839, | |
Fusion gene scores | * DoF score | 4 X 4 X 3=48 | 3 X 3 X 3=27 |
# samples | 4 | 3 | |
** MAII score | log2(4/48*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(3/27*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: PRPF18 [Title/Abstract] AND CCDC3 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | LUAD | TCGA-49-AAR0-01A | PRPF18 | chr10 | 13629152 | + | CCDC3 | chr10 | 12940679 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000378572 | ENST00000378825 | PRPF18 | chr10 | 13629152 | + | CCDC3 | chr10 | 12940679 | - |
In-frame | ENST00000378572 | ENST00000378839 | PRPF18 | chr10 | 13629152 | + | CCDC3 | chr10 | 12940679 | - |
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FusionProtFeatures for PRPF18_CCDC3 |
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Hgene | Tgene |
PRPF18 | CCDC3 |
Participates in the second step of pre-mRNA splicing.{ECO:0000269|PubMed:9000057}. | Negatively regulates TNF-alpha-induced pro-inflammatoryresponse in endothelial cells (ECs) via inhibition of TNF-alpha-induced NF-kappaB activation in ECs (PubMed:25193116). Positivelyregulates lipid accumulation in adipose cells (By similarity).{ECO:0000250|UniProtKB:Q9D6Y1, ECO:0000269|PubMed:25193116}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for PRPF18_CCDC3 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_PRPF18_ENST00000378572_chr10_13629152_+_CCDC3_ENST00000378839_chr10_12940679_-_110aa MDILKSEILRKRQLVEDRNLLVLMCSSVQKALFEEEDHVKKLQQKVATLEKRNRQLRERVKKVKRSLRQARKKGRHLELANQKLSEKLAA |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_PRPF18_ENST00000378572_chr10_13629152_+_CCDC3_ENST00000378839_chr10_12940679_-_330nt ATGGACATTCTGAAATCAGAGATCCTTCGGAAGCGGCAGCTGGTGGAGGACAGGAACCTGCTGGTGCTCATGTGCTCCTCGGTGCAGAAG GCCTTGTTTGAGGAGGAGGACCACGTCAAGAAACTGCAGCAGAAAGTGGCCACCCTGGAGAAGCGCAACCGGCAGCTCCGGGAGCGAGTG AAGAAGGTCAAGAGGTCCTTGCGGCAGGCGCGTAAGAAGGGCCGCCACCTGGAGCTGGCGAACCAGAAACTCAGTGAGAAGCTGGCGGCG |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_PRPF18_ENST00000378572_chr10_13629152_+_CCDC3_ENST00000378839_chr10_12940679_-_2279nt CTCTCTCATCCCAGCTTCCGCCGGAAGCGGCTCCTGTCAGTTGTTCTCAGGTGTTTGGGCTTGTTGTTCCGTATACTCAGTGGGTTCGCG GCCGCCGGCCCAGTGAGGCTGGGTTCGAGGAGCTGGAGCGGGAAACTGGAGCTTAAATTCTGGCGGCGAGATGGACATTCTGAAATCAGA GATCCTTCGGAAGCGGCAGCTGGTGGAGGACAGGAACCTGCTGGTGCTCATGTGCTCCTCGGTGCAGAAGGCCTTGTTTGAGGAGGAGGA CCACGTCAAGAAACTGCAGCAGAAAGTGGCCACCCTGGAGAAGCGCAACCGGCAGCTCCGGGAGCGAGTGAAGAAGGTCAAGAGGTCCTT GCGGCAGGCGCGTAAGAAGGGCCGCCACCTGGAGCTGGCGAACCAGAAACTCAGTGAGAAGCTGGCGGCGGGCGCGCTGCCGCACATCAA TGCCCGGGGGCCCGTGCGCCCCCCCTACCTGCGGGGGTAACGGGCCTGGGGGCTGCCAGGTGTGCAGGGCCAATCCTGACGGTAATTGAG AATGAGTGAGGTTTCGTACATGCAGCTATTTCAAGGGTTGTAAGAGTTTTTGTTTTTAATCACGCATTTGGTAGAGTCTAAATGGATAAA ATGCAAGGCTTGCTTTCCCCTTGGGTGCTGGCCTCAATGTCAGACCCCACGCGCTGCCCCTTCCTGGCCTGACCCCAGACGCAGTGCCTG GCAGTCCAGAGGCAGTGGGATCCCTGAGTGCTGAATGCTCGCCTGCAGAGCAGCCCAGAAAGAGCCCTGACTGGGGAGAGAACATTTTAG AATCTCTAGTGTAAAAGACATCAACGTGCTTAGCCTTTATTTCAGAAAAAAATCAGGGTGGTTCCCAGCTCCCCAGTCCAGGACAACCAT TAGTCCTGATGAGTGAGCTGACGCTGGTGCTGGAACCTGCTGGCACCTCACTGGCCACATCTTTGGAAGGGGATGGTGGCCTTGCATCCA AGATGCCTGAAAATCAGCACGTGCAGGGCCTCCCTATCCAGCCAGCATTTTCCTTCCAGCTGAGGCAGGTGAAGACTTCATAAGCTCATC ACAGGGGAGGGAATTAGGAGCAGGGCAGCAGGTAATTAAACAAGATAAATTATACCTGATTTCCAACACCAGCTACAAAGAGTTGAAGAT GATACCTATGGGTCGCGTTAACACAGGGGGCAACTGCCTTGATCGGCCTGCCATGGGTCATCAGACTGCTTCCTAAATTGAGAGAAACTG AGCAATCTCTCAGCCACTGCTATAGTCTAACTTCTTGTTTGCTGAGTAATTGTTTCTAATGTCTCTGAACTCAAAGTGAGGTGCTCCAAG ACGCTGTGAACTTCTGCAAAGACACCTCCTTACCTACTGGGATCACGTGACCTGACCTCACTCCCAGCCAGGCTCCCAAAGGGCTCATTC CAGCCATTCCAATCTCTTCTTCTTTATGCAAACACTTTTCCCCCACAACAAGCCTTGTTTGTTCCGATAGGAATACGTGTACGTCAGTGC ACTTGTCCTTACGTCAGTTCCTTACACCACCAAAGCACTTCACCTTTCTGGAAATAAAACTTTTAAGACACTACTATAAGTAAAAATGAG AGTATTCACTAGACTTATTGCTCAGGCACATTTGAGTGGGTCCCAGCTGTGTGATTAAGAAGTCAACTGGGTGGCCTTTTCTGGGTTATC TTCTGATCATGGCCTTTCAACCCAACAAGGGCCCTTCCCTGCTCTTCCACCAGTAAAGGCTCCTGGCCTCTCATCAGGATCTGCCCCCCA GAGACCCCCCCCAGACACTGCAGGGCCTGGTGATGCTGTCCTCTGTACCGGAAATGGCAGGCACTGTCAGATTTCCACTCTTCTGCCTTT AGGAAGGCTGGGTGCTTCTTGCTCTGACAGCCAGTCTGGGGAGATGACTCTTACGTTGCTTGAGTCTTGGTGGCAGGCTGCTGTCCACGG GGGAGAAGTCTCTGCTCTGGACTGGACAGAAGAGAGACTTTTACCCTGGGGCACTCACACGGCCAAGCTTCTGCCACCACTTCATTAGCT GTATTCTCCATAGTATGGTGAAATAGCAGGTGCGTCTTCTAGTTTATTCCTCCTGGGGACATTTCCTCAAAGCAGTTTTGCGCCCCCGCA AGGGAATGGTCAGCCTAAGGGTAATGTACAGCCCGTGCTTGGAGAACCATGGAAGCTACACCCCTACAGGTGCATACTGTTCTGCTTTTC |
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FusionGenePPI for PRPF18_CCDC3 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
PRPF18 | LSM4, GTF2B, YWHAZ, RHOU | CCDC3 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for PRPF18_CCDC3 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PRPF18_CCDC3 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |