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Fusion gene ID: 28735 |
FusionGeneSummary for PRKCB_CHRNA4 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: PRKCB_CHRNA4 | Fusion gene ID: 28735 | Hgene | Tgene | Gene symbol | PRKCB | CHRNA4 | Gene ID | 5579 | 1137 |
| Gene name | protein kinase C beta | cholinergic receptor nicotinic alpha 4 subunit | |
| Synonyms | PKC-beta|PKCB|PRKCB1|PRKCB2 | BFNC|EBN|EBN1|NACHR|NACHRA4|NACRA4 | |
| Cytomap | 16p12.2-p12.1 | 20q13.33 | |
| Type of gene | protein-coding | protein-coding | |
| Description | protein kinase C beta typePKC-Bprotein kinase C, beta 1 polypeptide | neuronal acetylcholine receptor subunit alpha-4cholinergic receptor, nicotinic alpha 4cholinergic receptor, nicotinic, alpha 4 (neuronal)cholinergic receptor, nicotinic, alpha polypeptide 4neuronal nicotinic acetylcholine receptor alpha-4 subunit | |
| Modification date | 20180523 | 20180523 | |
| UniProtAcc | P05771 | P43681 | |
| Ensembl transtripts involved in fusion gene | ENST00000321728, ENST00000303531, ENST00000482000, ENST00000498058, | ENST00000463705, ENST00000370263, | |
| Fusion gene scores | * DoF score | 3 X 3 X 1=9 | 2 X 2 X 2=8 |
| # samples | 3 | 2 | |
| ** MAII score | log2(3/9*10)=1.73696559416621 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(2/8*10)=1.32192809488736 | |
| Context | PubMed: PRKCB [Title/Abstract] AND CHRNA4 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | PRKCB | GO:0035408 | histone H3-T6 phosphorylation | 20228790 |
| Tgene | CHRNA4 | GO:0001666 | response to hypoxia | 12189247 |
| Tgene | CHRNA4 | GO:0007165 | signal transduction | 8906617 |
| Tgene | CHRNA4 | GO:0035094 | response to nicotine | 12189247 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS3.1 | AW804554 | PRKCB | chr16 | 24175367 | + | CHRNA4 | chr20 | 61993559 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-intron | ENST00000321728 | ENST00000463705 | PRKCB | chr16 | 24175367 | + | CHRNA4 | chr20 | 61993559 | + |
| intron-intron | ENST00000321728 | ENST00000370263 | PRKCB | chr16 | 24175367 | + | CHRNA4 | chr20 | 61993559 | + |
| intron-intron | ENST00000303531 | ENST00000463705 | PRKCB | chr16 | 24175367 | + | CHRNA4 | chr20 | 61993559 | + |
| intron-intron | ENST00000303531 | ENST00000370263 | PRKCB | chr16 | 24175367 | + | CHRNA4 | chr20 | 61993559 | + |
| intron-intron | ENST00000482000 | ENST00000463705 | PRKCB | chr16 | 24175367 | + | CHRNA4 | chr20 | 61993559 | + |
| intron-intron | ENST00000482000 | ENST00000370263 | PRKCB | chr16 | 24175367 | + | CHRNA4 | chr20 | 61993559 | + |
| intron-intron | ENST00000498058 | ENST00000463705 | PRKCB | chr16 | 24175367 | + | CHRNA4 | chr20 | 61993559 | + |
| intron-intron | ENST00000498058 | ENST00000370263 | PRKCB | chr16 | 24175367 | + | CHRNA4 | chr20 | 61993559 | + |
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FusionProtFeatures for PRKCB_CHRNA4 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| PRKCB | CHRNA4 |
| After binding acetylcholine, the AChR responds by anextensive change in conformation that affects all subunits andleads to opening of an ion-conducting channel across the plasmamembrane permeable to sodium ions. {ECO:0000269|PubMed:22361591}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for PRKCB_CHRNA4 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for PRKCB_CHRNA4 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for PRKCB_CHRNA4 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
| Hgene | PRKCB | P05771 | DB08862 | Cholecystokinin | Protein kinase C beta type | small molecule | approved|investigational |
| Tgene | CHRNA4 | P43681 | DB00184 | Nicotine | Neuronal acetylcholine receptor subunit alpha-4 | small molecule | approved |
| Tgene | CHRNA4 | P43681 | DB00514 | Dextromethorphan | Neuronal acetylcholine receptor subunit alpha-4 | small molecule | approved |
| Tgene | CHRNA4 | P43681 | DB00674 | Galantamine | Neuronal acetylcholine receptor subunit alpha-4 | small molecule | approved |
| Tgene | CHRNA4 | P43681 | DB00849 | Methylphenobarbital | Neuronal acetylcholine receptor subunit alpha-4 | small molecule | approved |
| Tgene | CHRNA4 | P43681 | DB00898 | Ethanol | Neuronal acetylcholine receptor subunit alpha-4 | small molecule | approved |
| Tgene | CHRNA4 | P43681 | DB01354 | Heptabarbital | Neuronal acetylcholine receptor subunit alpha-4 | small molecule | approved |
| Tgene | CHRNA4 | P43681 | DB01355 | Hexobarbital | Neuronal acetylcholine receptor subunit alpha-4 | small molecule | approved |
| Tgene | CHRNA4 | P43681 | DB00306 | Talbutal | Neuronal acetylcholine receptor subunit alpha-4 | small molecule | approved|illicit |
| Tgene | CHRNA4 | P43681 | DB01351 | Amobarbital | Neuronal acetylcholine receptor subunit alpha-4 | small molecule | approved|illicit |
| Tgene | CHRNA4 | P43681 | DB01352 | Aprobarbital | Neuronal acetylcholine receptor subunit alpha-4 | small molecule | approved|illicit |
| Tgene | CHRNA4 | P43681 | DB01353 | Butethal | Neuronal acetylcholine receptor subunit alpha-4 | small molecule | approved|illicit |
| Tgene | CHRNA4 | P43681 | DB00564 | Carbamazepine | Neuronal acetylcholine receptor subunit alpha-4 | small molecule | approved|investigational |
| Tgene | CHRNA4 | P43681 | DB00657 | Mecamylamine | Neuronal acetylcholine receptor subunit alpha-4 | small molecule | approved|investigational |
| Tgene | CHRNA4 | P43681 | DB00747 | Scopolamine | Neuronal acetylcholine receptor subunit alpha-4 | small molecule | approved|investigational |
| Tgene | CHRNA4 | P43681 | DB00981 | Physostigmine | Neuronal acetylcholine receptor subunit alpha-4 | small molecule | approved|investigational |
| Tgene | CHRNA4 | P43681 | DB01174 | Phenobarbital | Neuronal acetylcholine receptor subunit alpha-4 | small molecule | approved|investigational |
| Tgene | CHRNA4 | P43681 | DB01273 | Varenicline | Neuronal acetylcholine receptor subunit alpha-4 | small molecule | approved|investigational |
| Tgene | CHRNA4 | P43681 | DB00312 | Pentobarbital | Neuronal acetylcholine receptor subunit alpha-4 | small molecule | approved|investigational|vet_approved |
| Tgene | CHRNA4 | P43681 | DB00783 | Estradiol | Neuronal acetylcholine receptor subunit alpha-4 | small molecule | approved|investigational|vet_approved |
| Tgene | CHRNA4 | P43681 | DB00418 | Secobarbital | Neuronal acetylcholine receptor subunit alpha-4 | small molecule | approved|vet_approved |
| Tgene | CHRNA4 | P43681 | DB00572 | Atropine | Neuronal acetylcholine receptor subunit alpha-4 | small molecule | approved|vet_approved |
| Tgene | CHRNA4 | P43681 | DB00599 | Thiopental | Neuronal acetylcholine receptor subunit alpha-4 | small molecule | approved|vet_approved |
| Tgene | CHRNA4 | P43681 | DB00794 | Primidone | Neuronal acetylcholine receptor subunit alpha-4 | small molecule | approved|vet_approved |
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RelatedDiseases for PRKCB_CHRNA4 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | PRKCB | C0004352 | Autistic Disorder | 1 | CTD_human |
| Hgene | PRKCB | C0009404 | Colorectal Neoplasms | 1 | CTD_human |
| Hgene | PRKCB | C0011860 | Diabetes Mellitus, Non-Insulin-Dependent | 1 | CTD_human |
| Hgene | PRKCB | C0018800 | Cardiomegaly | 1 | CTD_human |
| Hgene | PRKCB | C0020456 | Hyperglycemia | 1 | CTD_human |
| Hgene | PRKCB | C0023493 | Adult T-Cell Lymphoma/Leukemia | 1 | CTD_human |
| Hgene | PRKCB | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |
| Hgene | PRKCB | C0038356 | Stomach Neoplasms | 1 | CTD_human |
| Hgene | PRKCB | C0041696 | Unipolar Depression | 1 | PSYGENET |
| Hgene | PRKCB | C1269683 | Major Depressive Disorder | 1 | PSYGENET |
| Tgene | CHRNA4 | C0001973 | Alcoholic Intoxication, Chronic | 4 | PSYGENET |
| Tgene | CHRNA4 | C0036341 | Schizophrenia | 4 | PSYGENET |
| Tgene | CHRNA4 | C0011570 | Mental Depression | 3 | PSYGENET |
| Tgene | CHRNA4 | C0011581 | Depressive disorder | 3 | PSYGENET |
| Tgene | CHRNA4 | C0085541 | Epilepsy, Frontal Lobe | 3 | CTD_human |
| Tgene | CHRNA4 | C0344315 | Depressed mood | 3 | PSYGENET |
| Tgene | CHRNA4 | C0036572 | Seizures | 2 | CTD_human;HPO |
| Tgene | CHRNA4 | C1838049 | Epilepsy, Nocturnal Frontal Lobe, Type 1 | 2 | CTD_human;UNIPROT |
| Tgene | CHRNA4 | C0004352 | Autistic Disorder | 1 | CTD_human |
| Tgene | CHRNA4 | C0008073 | Developmental Disabilities | 1 | CTD_human |
| Tgene | CHRNA4 | C0009171 | Cocaine Abuse | 1 | PSYGENET |
| Tgene | CHRNA4 | C0013421 | Dystonia | 1 | CTD_human |
| Tgene | CHRNA4 | C0021368 | Inflammation | 1 | CTD_human |
| Tgene | CHRNA4 | C0027765 | nervous system disorder | 1 | CTD_human |
| Tgene | CHRNA4 | C1263846 | Attention deficit hyperactivity disorder | 1 | CTD_human |
| Tgene | CHRNA4 | C4042891 | Sleep Wake Disorders | 1 | CTD_human |
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