|
||||||
|
 | |
| |
| |
| |
| |
|
Fusion gene ID: 28660 |
FusionGeneSummary for PRIM2_COL21A1 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: PRIM2_COL21A1 | Fusion gene ID: 28660 | Hgene | Tgene | Gene symbol | PRIM2 | COL21A1 | Gene ID | 5558 | 81578 |
| Gene name | DNA primase subunit 2 | collagen type XXI alpha 1 chain | |
| Synonyms | PRIM2A|p58 | COLA1L|FP633 | |
| Cytomap | 6p11.2 | 6p12.1|6p12.3-p11.2 | |
| Type of gene | protein-coding | protein-coding | |
| Description | DNA primase large subunitDNA primase 58 kDa subunitprimase (DNA) subunit 2primase, DNA, polypeptide 2 (58kDa) | collagen alpha-1(XXI) chainalpha 1 chain-like collagencollagen, type XXI, alpha 1 | |
| Modification date | 20180523 | 20180523 | |
| UniProtAcc | Q96P44 | ||
| Ensembl transtripts involved in fusion gene | ENST00000607273, ENST00000389488, | ENST00000244728, ENST00000370819, ENST00000535941, ENST00000370808, ENST00000467045, | |
| Fusion gene scores | * DoF score | 5 X 3 X 4=60 | 7 X 7 X 5=245 |
| # samples | 5 | 7 | |
| ** MAII score | log2(5/60*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(7/245*10)=-1.8073549220576 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: PRIM2 [Title/Abstract] AND COL21A1 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | LD | BRCA | TCGA-BH-A0BL-01A | PRIM2 | chr6 | 57246966 | + | COL21A1 | chr6 | 55929420 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000607273 | ENST00000244728 | PRIM2 | chr6 | 57246966 | + | COL21A1 | chr6 | 55929420 | - |
| In-frame | ENST00000607273 | ENST00000370819 | PRIM2 | chr6 | 57246966 | + | COL21A1 | chr6 | 55929420 | - |
| In-frame | ENST00000607273 | ENST00000535941 | PRIM2 | chr6 | 57246966 | + | COL21A1 | chr6 | 55929420 | - |
| In-frame | ENST00000607273 | ENST00000370808 | PRIM2 | chr6 | 57246966 | + | COL21A1 | chr6 | 55929420 | - |
| 5CDS-5UTR | ENST00000607273 | ENST00000467045 | PRIM2 | chr6 | 57246966 | + | COL21A1 | chr6 | 55929420 | - |
| 3UTR-3CDS | ENST00000389488 | ENST00000244728 | PRIM2 | chr6 | 57246966 | + | COL21A1 | chr6 | 55929420 | - |
| 3UTR-3CDS | ENST00000389488 | ENST00000370819 | PRIM2 | chr6 | 57246966 | + | COL21A1 | chr6 | 55929420 | - |
| 3UTR-3CDS | ENST00000389488 | ENST00000535941 | PRIM2 | chr6 | 57246966 | + | COL21A1 | chr6 | 55929420 | - |
| 3UTR-3CDS | ENST00000389488 | ENST00000370808 | PRIM2 | chr6 | 57246966 | + | COL21A1 | chr6 | 55929420 | - |
| 3UTR-5UTR | ENST00000389488 | ENST00000467045 | PRIM2 | chr6 | 57246966 | + | COL21A1 | chr6 | 55929420 | - |
Top |
FusionProtFeatures for PRIM2_COL21A1 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| PRIM2 | COL21A1 |
| Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | >COL21A1 | chr6:57246966 | chr6:55929420 | ENST00000244728 | - | 22 | 30 | 734_787 | 709 | 958 | Domain | Note=Collagen-like 5 |
| Tgene | >COL21A1 | chr6:57246966 | chr6:55929420 | ENST00000244728 | - | 22 | 30 | 825_882 | 709 | 958 | Domain | Note=Collagen-like 6 |
| Tgene | >COL21A1 | chr6:57246966 | chr6:55929420 | ENST00000244728 | - | 22 | 30 | 884_934 | 709 | 958 | Domain | Note=Collagen-like 7 |
| Tgene | >COL21A1 | chr6:57246966 | chr6:55929420 | ENST00000370808 | - | 6 | 14 | 230_412 | 109 | 324 | Domain | Note=Laminin G-like |
| Tgene | >COL21A1 | chr6:57246966 | chr6:55929420 | ENST00000370808 | - | 6 | 14 | 448_500 | 109 | 324 | Domain | Note=Collagen-like 1 |
| Tgene | >COL21A1 | chr6:57246966 | chr6:55929420 | ENST00000370808 | - | 6 | 14 | 501_542 | 109 | 324 | Domain | Note=Collagen-like 2 |
| Tgene | >COL21A1 | chr6:57246966 | chr6:55929420 | ENST00000370808 | - | 6 | 14 | 543_594 | 109 | 324 | Domain | Note=Collagen-like 3 |
| Tgene | >COL21A1 | chr6:57246966 | chr6:55929420 | ENST00000370808 | - | 6 | 14 | 681_733 | 109 | 324 | Domain | Note=Collagen-like 4 |
| Tgene | >COL21A1 | chr6:57246966 | chr6:55929420 | ENST00000370808 | - | 6 | 14 | 734_787 | 109 | 324 | Domain | Note=Collagen-like 5 |
| Tgene | >COL21A1 | chr6:57246966 | chr6:55929420 | ENST00000370808 | - | 6 | 14 | 825_882 | 109 | 324 | Domain | Note=Collagen-like 6 |
| Tgene | >COL21A1 | chr6:57246966 | chr6:55929420 | ENST00000370808 | - | 6 | 14 | 884_934 | 109 | 324 | Domain | Note=Collagen-like 7 |
| Tgene | >COL21A1 | chr6:57246966 | chr6:55929420 | ENST00000370819 | - | 21 | 29 | 734_787 | 706 | 955 | Domain | Note=Collagen-like 5 |
| Tgene | >COL21A1 | chr6:57246966 | chr6:55929420 | ENST00000370819 | - | 21 | 29 | 825_882 | 706 | 955 | Domain | Note=Collagen-like 6 |
| Tgene | >COL21A1 | chr6:57246966 | chr6:55929420 | ENST00000370819 | - | 21 | 29 | 884_934 | 706 | 955 | Domain | Note=Collagen-like 7 |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | COL21A1 | chr6:57246966 | chr6:55929420 | ENST00000244728 | - | 22 | 30 | 230_412 | 709 | 958 | Domain | Note=Laminin G-like |
| Tgene | COL21A1 | chr6:57246966 | chr6:55929420 | ENST00000244728 | - | 22 | 30 | 37_211 | 709 | 958 | Domain | VWFA |
| Tgene | COL21A1 | chr6:57246966 | chr6:55929420 | ENST00000244728 | - | 22 | 30 | 448_500 | 709 | 958 | Domain | Note=Collagen-like 1 |
| Tgene | COL21A1 | chr6:57246966 | chr6:55929420 | ENST00000244728 | - | 22 | 30 | 501_542 | 709 | 958 | Domain | Note=Collagen-like 2 |
| Tgene | COL21A1 | chr6:57246966 | chr6:55929420 | ENST00000244728 | - | 22 | 30 | 543_594 | 709 | 958 | Domain | Note=Collagen-like 3 |
| Tgene | COL21A1 | chr6:57246966 | chr6:55929420 | ENST00000244728 | - | 22 | 30 | 681_733 | 709 | 958 | Domain | Note=Collagen-like 4 |
| Tgene | COL21A1 | chr6:57246966 | chr6:55929420 | ENST00000370808 | - | 6 | 14 | 37_211 | 109 | 324 | Domain | VWFA |
| Tgene | COL21A1 | chr6:57246966 | chr6:55929420 | ENST00000370819 | - | 21 | 29 | 230_412 | 706 | 955 | Domain | Note=Laminin G-like |
| Tgene | COL21A1 | chr6:57246966 | chr6:55929420 | ENST00000370819 | - | 21 | 29 | 37_211 | 706 | 955 | Domain | VWFA |
| Tgene | COL21A1 | chr6:57246966 | chr6:55929420 | ENST00000370819 | - | 21 | 29 | 448_500 | 706 | 955 | Domain | Note=Collagen-like 1 |
| Tgene | COL21A1 | chr6:57246966 | chr6:55929420 | ENST00000370819 | - | 21 | 29 | 501_542 | 706 | 955 | Domain | Note=Collagen-like 2 |
| Tgene | COL21A1 | chr6:57246966 | chr6:55929420 | ENST00000370819 | - | 21 | 29 | 543_594 | 706 | 955 | Domain | Note=Collagen-like 3 |
| Tgene | COL21A1 | chr6:57246966 | chr6:55929420 | ENST00000370819 | - | 21 | 29 | 681_733 | 706 | 955 | Domain | Note=Collagen-like 4 |
Top |
FusionGeneSequence for PRIM2_COL21A1 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_PRIM2_ENST00000607273_chr6_57246966_+_COL21A1_ENST00000244728_chr6_55929420_-_480aa MEFSGRKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLGVSYVKGTEQYQSKLESELRKLKFSYRENLE DEYEPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGF ESIYKIPFADALDLFRGRKVYLEDGFAYVPLKDIVAIILNEFRAKLSKALAGQKGENGRQGIPGQQGIQGHHGAKGERGEKGEPGVRGAI GSKGESGVDGLMGPAGPKGQPGDPGPQGPPGLDGKPGREFSEQFIRQVCTDVIRAQLPVLLQSGRIRNCDHCLSQHGSPGIPGPPGPIGP EGPRGLPGLPGRDGVPGLVGVPGRPGVRGLKGLPGRNGEKGSQGFGYPGEQGPPGPPGPEGPPGISKEGPPGDPGLPGKDGDHGKPGIQG >In-frame_PRIM2_ENST00000607273_chr6_57246966_+_COL21A1_ENST00000370819_chr6_55929420_-_480aa MEFSGRKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLGVSYVKGTEQYQSKLESELRKLKFSYRENLE DEYEPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGF ESIYKIPFADALDLFRGRKVYLEDGFAYVPLKDIVAIILNEFRAKLSKALAGQKGENGRQGIPGQQGIQGHHGAKGERGEKGEPGVRGAI GSKGESGVDGLMGPAGPKGQPGDPGPQGPPGLDGKPGREFSEQFIRQVCTDVIRAQLPVLLQSGRIRNCDHCLSQHGSPGIPGPPGPIGP EGPRGLPGLPGRDGVPGLVGVPGRPGVRGLKGLPGRNGEKGSQGFGYPGEQGPPGPPGPEGPPGISKEGPPGDPGLPGKDGDHGKPGIQG >In-frame_PRIM2_ENST00000607273_chr6_57246966_+_COL21A1_ENST00000535941_chr6_55929420_-_480aa MEFSGRKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLGVSYVKGTEQYQSKLESELRKLKFSYRENLE DEYEPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGF ESIYKIPFADALDLFRGRKVYLEDGFAYVPLKDIVAIILNEFRAKLSKALAGQKGENGRQGIPGQQGIQGHHGAKGERGEKGEPGVRGAI GSKGESGVDGLMGPAGPKGQPGDPGPQGPPGLDGKPGREFSEQFIRQVCTDVIRAQLPVLLQSGRIRNCDHCLSQHGSPGIPGPPGPIGP EGPRGLPGLPGRDGVPGLVGVPGRPGVRGLKGLPGRNGEKGSQGFGYPGEQGPPGPPGPEGPPGISKEGPPGDPGLPGKDGDHGKPGIQG >In-frame_PRIM2_ENST00000607273_chr6_57246966_+_COL21A1_ENST00000370808_chr6_55929420_-_446aa MEFSGRKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLGVSYVKGTEQYQSKLESELRKLKFSYRENLE DEYEPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGF ESIYKIPFADALDLFRGRKVYLEDGFAYVPLKDIVAIILNEFRAKLSKALAGQKGENGRQGIPGQQGIQGHHGAKGERGEKGEPGVRGAI GSKGESGVDGLMGPAGPKGQPGDPGPQGPPGLDGKPGREFSEQFIRQVCTDVIRGPEGPRGLPGLPGRDGVPGLVGVPGRPGVRGLKGLP |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_PRIM2_ENST00000607273_chr6_57246966_+_COL21A1_ENST00000244728_chr6_55929420_-_1440nt ATGGAGTTTTCTGGAAGAAAGTGGAGGAAGCTGAGGTTGGCAGGTGACCAGAGGAATGCTTCCTACCCTCATTGCCTTCAGTTTTACTTG CAGCCACCTTCTGAAAACATATCTTTAATAGAATTTGAAAACTTGGCTATTGATAGAGTTAAATTGTTAAAATCAGTTGAAAATCTTGGA GTGAGCTATGTGAAAGGAACTGAACAATACCAGAGTAAGTTGGAGAGTGAGCTTCGGAAGCTCAAGTTTTCCTACAGAGAAAACTTAGAA GATGAATATGAACCACGAAGAAGAGATCATATTTCTCATTTTATTTTGCGGCTTGCTTATTGCCAGTCTGAAGAACTTAGACGCTGGTTC ATTCAACAAGAAATGGATCTCCTTCGATTTAGATTTAGTATTTTACCCAAGGATAAAATTCAGGATTTCTTAAAGGATAGCCAATTGCAG TTTGAGGCTATAAGTGATGAAGAGAAGACTCTTCGAGAACAGGAGATTGTTGCCTCATCACCAAGTTTAAGTGGACTTAAGTTGGGGTTC GAGTCCATTTATAAGATCCCTTTTGCTGATGCTCTGGATTTGTTTCGAGGAAGGAAAGTCTATTTGGAAGATGGCTTTGCTTACGTACCA CTTAAGGACATTGTGGCAATCATCCTGAATGAATTTAGAGCCAAACTGTCCAAGGCTTTGGCAGGTCAAAAGGGAGAAAATGGAAGACAG GGAATTCCAGGGCAACAGGGAATTCAAGGCCATCATGGTGCAAAAGGAGAGAGAGGTGAAAAGGGAGAACCTGGTGTCCGAGGTGCCATT GGATCAAAAGGAGAATCTGGGGTGGATGGCTTGATGGGGCCCGCAGGTCCTAAGGGGCAACCTGGGGATCCAGGTCCTCAGGGACCCCCA GGTTTGGATGGGAAGCCCGGAAGAGAGTTTTCAGAACAATTTATTCGACAAGTTTGCACAGATGTAATAAGAGCCCAGCTACCAGTCTTA CTTCAGAGTGGAAGAATTAGAAATTGTGATCATTGCCTGTCCCAACATGGCTCCCCGGGTATTCCTGGGCCACCTGGTCCGATAGGCCCA GAGGGTCCCAGAGGATTACCTGGTTTGCCAGGAAGAGATGGTGTTCCTGGATTAGTGGGTGTCCCTGGACGTCCAGGTGTCAGAGGATTA AAAGGCCTACCAGGAAGAAATGGGGAAAAAGGGAGCCAAGGGTTTGGGTATCCTGGAGAACAAGGTCCTCCTGGTCCCCCAGGTCCAGAG GGCCCTCCTGGAATAAGCAAAGAAGGTCCTCCAGGAGACCCAGGTCTCCCTGGCAAAGATGGAGACCATGGAAAACCTGGAATCCAAGGG CAACCAGGCCCCCCAGGCATCTGCGACCCATCACTATGTTTTAGTGTAATTGCCAGAAGAGATCCGTTCAGAAAAGGACCAAACTATTAG >In-frame_PRIM2_ENST00000607273_chr6_57246966_+_COL21A1_ENST00000370819_chr6_55929420_-_1440nt ATGGAGTTTTCTGGAAGAAAGTGGAGGAAGCTGAGGTTGGCAGGTGACCAGAGGAATGCTTCCTACCCTCATTGCCTTCAGTTTTACTTG CAGCCACCTTCTGAAAACATATCTTTAATAGAATTTGAAAACTTGGCTATTGATAGAGTTAAATTGTTAAAATCAGTTGAAAATCTTGGA GTGAGCTATGTGAAAGGAACTGAACAATACCAGAGTAAGTTGGAGAGTGAGCTTCGGAAGCTCAAGTTTTCCTACAGAGAAAACTTAGAA GATGAATATGAACCACGAAGAAGAGATCATATTTCTCATTTTATTTTGCGGCTTGCTTATTGCCAGTCTGAAGAACTTAGACGCTGGTTC ATTCAACAAGAAATGGATCTCCTTCGATTTAGATTTAGTATTTTACCCAAGGATAAAATTCAGGATTTCTTAAAGGATAGCCAATTGCAG TTTGAGGCTATAAGTGATGAAGAGAAGACTCTTCGAGAACAGGAGATTGTTGCCTCATCACCAAGTTTAAGTGGACTTAAGTTGGGGTTC GAGTCCATTTATAAGATCCCTTTTGCTGATGCTCTGGATTTGTTTCGAGGAAGGAAAGTCTATTTGGAAGATGGCTTTGCTTACGTACCA CTTAAGGACATTGTGGCAATCATCCTGAATGAATTTAGAGCCAAACTGTCCAAGGCTTTGGCAGGTCAAAAGGGAGAAAATGGAAGACAG GGAATTCCAGGGCAACAGGGAATTCAAGGCCATCATGGTGCAAAAGGAGAGAGAGGTGAAAAGGGAGAACCTGGTGTCCGAGGTGCCATT GGATCAAAAGGAGAATCTGGGGTGGATGGCTTGATGGGGCCCGCAGGTCCTAAGGGGCAACCTGGGGATCCAGGTCCTCAGGGACCCCCA GGTTTGGATGGGAAGCCCGGAAGAGAGTTTTCAGAACAATTTATTCGACAAGTTTGCACAGATGTAATAAGAGCCCAGCTACCAGTCTTA CTTCAGAGTGGAAGAATTAGAAATTGTGATCATTGCCTGTCCCAACATGGCTCCCCGGGTATTCCTGGGCCACCTGGTCCGATAGGCCCA GAGGGTCCCAGAGGATTACCTGGTTTGCCAGGAAGAGATGGTGTTCCTGGATTAGTGGGTGTCCCTGGACGTCCAGGTGTCAGAGGATTA AAAGGCCTACCAGGAAGAAATGGGGAAAAAGGGAGCCAAGGGTTTGGGTATCCTGGAGAACAAGGTCCTCCTGGTCCCCCAGGTCCAGAG GGCCCTCCTGGAATAAGCAAAGAAGGTCCTCCAGGAGACCCAGGTCTCCCTGGCAAAGATGGAGACCATGGAAAACCTGGAATCCAAGGG CAACCAGGCCCCCCAGGCATCTGCGACCCATCACTATGTTTTAGTGTAATTGCCAGAAGAGATCCGTTCAGAAAAGGACCAAACTATTAG >In-frame_PRIM2_ENST00000607273_chr6_57246966_+_COL21A1_ENST00000535941_chr6_55929420_-_1440nt ATGGAGTTTTCTGGAAGAAAGTGGAGGAAGCTGAGGTTGGCAGGTGACCAGAGGAATGCTTCCTACCCTCATTGCCTTCAGTTTTACTTG CAGCCACCTTCTGAAAACATATCTTTAATAGAATTTGAAAACTTGGCTATTGATAGAGTTAAATTGTTAAAATCAGTTGAAAATCTTGGA GTGAGCTATGTGAAAGGAACTGAACAATACCAGAGTAAGTTGGAGAGTGAGCTTCGGAAGCTCAAGTTTTCCTACAGAGAAAACTTAGAA GATGAATATGAACCACGAAGAAGAGATCATATTTCTCATTTTATTTTGCGGCTTGCTTATTGCCAGTCTGAAGAACTTAGACGCTGGTTC ATTCAACAAGAAATGGATCTCCTTCGATTTAGATTTAGTATTTTACCCAAGGATAAAATTCAGGATTTCTTAAAGGATAGCCAATTGCAG TTTGAGGCTATAAGTGATGAAGAGAAGACTCTTCGAGAACAGGAGATTGTTGCCTCATCACCAAGTTTAAGTGGACTTAAGTTGGGGTTC GAGTCCATTTATAAGATCCCTTTTGCTGATGCTCTGGATTTGTTTCGAGGAAGGAAAGTCTATTTGGAAGATGGCTTTGCTTACGTACCA CTTAAGGACATTGTGGCAATCATCCTGAATGAATTTAGAGCCAAACTGTCCAAGGCTTTGGCAGGTCAAAAGGGAGAAAATGGAAGACAG GGAATTCCAGGGCAACAGGGAATTCAAGGCCATCATGGTGCAAAAGGAGAGAGAGGTGAAAAGGGAGAACCTGGTGTCCGAGGTGCCATT GGATCAAAAGGAGAATCTGGGGTGGATGGCTTGATGGGGCCCGCAGGTCCTAAGGGGCAACCTGGGGATCCAGGTCCTCAGGGACCCCCA GGTTTGGATGGGAAGCCCGGAAGAGAGTTTTCAGAACAATTTATTCGACAAGTTTGCACAGATGTAATAAGAGCCCAGCTACCAGTCTTA CTTCAGAGTGGAAGAATTAGAAATTGTGATCATTGCCTGTCCCAACATGGCTCCCCGGGTATTCCTGGGCCACCTGGTCCGATAGGCCCA GAGGGTCCCAGAGGATTACCTGGTTTGCCAGGAAGAGATGGTGTTCCTGGATTAGTGGGTGTCCCTGGACGTCCAGGTGTCAGAGGATTA AAAGGCCTACCAGGAAGAAATGGGGAAAAAGGGAGCCAAGGGTTTGGGTATCCTGGAGAACAAGGTCCTCCTGGTCCCCCAGGTCCAGAG GGCCCTCCTGGAATAAGCAAAGAAGGTCCTCCAGGAGACCCAGGTCTCCCTGGCAAAGATGGAGACCATGGAAAACCTGGAATCCAAGGG CAACCAGGCCCCCCAGGCATCTGCGACCCATCACTATGTTTTAGTGTAATTGCCAGAAGAGATCCGTTCAGAAAAGGACCAAACTATTAG >In-frame_PRIM2_ENST00000607273_chr6_57246966_+_COL21A1_ENST00000370808_chr6_55929420_-_1338nt ATGGAGTTTTCTGGAAGAAAGTGGAGGAAGCTGAGGTTGGCAGGTGACCAGAGGAATGCTTCCTACCCTCATTGCCTTCAGTTTTACTTG CAGCCACCTTCTGAAAACATATCTTTAATAGAATTTGAAAACTTGGCTATTGATAGAGTTAAATTGTTAAAATCAGTTGAAAATCTTGGA GTGAGCTATGTGAAAGGAACTGAACAATACCAGAGTAAGTTGGAGAGTGAGCTTCGGAAGCTCAAGTTTTCCTACAGAGAAAACTTAGAA GATGAATATGAACCACGAAGAAGAGATCATATTTCTCATTTTATTTTGCGGCTTGCTTATTGCCAGTCTGAAGAACTTAGACGCTGGTTC ATTCAACAAGAAATGGATCTCCTTCGATTTAGATTTAGTATTTTACCCAAGGATAAAATTCAGGATTTCTTAAAGGATAGCCAATTGCAG TTTGAGGCTATAAGTGATGAAGAGAAGACTCTTCGAGAACAGGAGATTGTTGCCTCATCACCAAGTTTAAGTGGACTTAAGTTGGGGTTC GAGTCCATTTATAAGATCCCTTTTGCTGATGCTCTGGATTTGTTTCGAGGAAGGAAAGTCTATTTGGAAGATGGCTTTGCTTACGTACCA CTTAAGGACATTGTGGCAATCATCCTGAATGAATTTAGAGCCAAACTGTCCAAGGCTTTGGCAGGTCAAAAGGGAGAAAATGGAAGACAG GGAATTCCAGGGCAACAGGGAATTCAAGGCCATCATGGTGCAAAAGGAGAGAGAGGTGAAAAGGGAGAACCTGGTGTCCGAGGTGCCATT GGATCAAAAGGAGAATCTGGGGTGGATGGCTTGATGGGGCCCGCAGGTCCTAAGGGGCAACCTGGGGATCCAGGTCCTCAGGGACCCCCA GGTTTGGATGGGAAGCCCGGAAGAGAGTTTTCAGAACAATTTATTCGACAAGTTTGCACAGATGTAATAAGAGGCCCAGAGGGTCCCAGA GGATTACCTGGTTTGCCAGGAAGAGATGGTGTTCCTGGATTAGTGGGTGTCCCTGGACGTCCAGGTGTCAGAGGATTAAAAGGCCTACCA GGAAGAAATGGGGAAAAAGGGAGCCAAGGGTTTGGGTATCCTGGAGAACAAGGTCCTCCTGGTCCCCCAGGTCCAGAGGGCCCTCCTGGA ATAAGCAAAGAAGGTCCTCCAGGAGACCCAGGTCTCCCTGGCAAAGATGGAGACCATGGAAAACCTGGAATCCAAGGGCAACCAGGCCCC |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_PRIM2_ENST00000607273_chr6_57246966_+_COL21A1_ENST00000244728_chr6_55929420_-_2594nt GGTTTCATATGAACTCTCCCGCCACCCGGGAACAGTGGCTGCCACCGTTTGTGTTTTCCCGAGTTTGAATTCTTGCAGGTGACCAAGATG GAGTTTTCTGGAAGAAAGTGGAGGAAGCTGAGGTTGGCAGGTGACCAGAGGAATGCTTCCTACCCTCATTGCCTTCAGTTTTACTTGCAG CCACCTTCTGAAAACATATCTTTAATAGAATTTGAAAACTTGGCTATTGATAGAGTTAAATTGTTAAAATCAGTTGAAAATCTTGGAGTG AGCTATGTGAAAGGAACTGAACAATACCAGAGTAAGTTGGAGAGTGAGCTTCGGAAGCTCAAGTTTTCCTACAGAGAAAACTTAGAAGAT GAATATGAACCACGAAGAAGAGATCATATTTCTCATTTTATTTTGCGGCTTGCTTATTGCCAGTCTGAAGAACTTAGACGCTGGTTCATT CAACAAGAAATGGATCTCCTTCGATTTAGATTTAGTATTTTACCCAAGGATAAAATTCAGGATTTCTTAAAGGATAGCCAATTGCAGTTT GAGGCTATAAGTGATGAAGAGAAGACTCTTCGAGAACAGGAGATTGTTGCCTCATCACCAAGTTTAAGTGGACTTAAGTTGGGGTTCGAG TCCATTTATAAGATCCCTTTTGCTGATGCTCTGGATTTGTTTCGAGGAAGGAAAGTCTATTTGGAAGATGGCTTTGCTTACGTACCACTT AAGGACATTGTGGCAATCATCCTGAATGAATTTAGAGCCAAACTGTCCAAGGCTTTGGCAGGTCAAAAGGGAGAAAATGGAAGACAGGGA ATTCCAGGGCAACAGGGAATTCAAGGCCATCATGGTGCAAAAGGAGAGAGAGGTGAAAAGGGAGAACCTGGTGTCCGAGGTGCCATTGGA TCAAAAGGAGAATCTGGGGTGGATGGCTTGATGGGGCCCGCAGGTCCTAAGGGGCAACCTGGGGATCCAGGTCCTCAGGGACCCCCAGGT TTGGATGGGAAGCCCGGAAGAGAGTTTTCAGAACAATTTATTCGACAAGTTTGCACAGATGTAATAAGAGCCCAGCTACCAGTCTTACTT CAGAGTGGAAGAATTAGAAATTGTGATCATTGCCTGTCCCAACATGGCTCCCCGGGTATTCCTGGGCCACCTGGTCCGATAGGCCCAGAG GGTCCCAGAGGATTACCTGGTTTGCCAGGAAGAGATGGTGTTCCTGGATTAGTGGGTGTCCCTGGACGTCCAGGTGTCAGAGGATTAAAA GGCCTACCAGGAAGAAATGGGGAAAAAGGGAGCCAAGGGTTTGGGTATCCTGGAGAACAAGGTCCTCCTGGTCCCCCAGGTCCAGAGGGC CCTCCTGGAATAAGCAAAGAAGGTCCTCCAGGAGACCCAGGTCTCCCTGGCAAAGATGGAGACCATGGAAAACCTGGAATCCAAGGGCAA CCAGGCCCCCCAGGCATCTGCGACCCATCACTATGTTTTAGTGTAATTGCCAGAAGAGATCCGTTCAGAAAAGGACCAAACTATTAGTGT CTGATGCCTCATTCAGCAGCCTAGGCATGGTGCTTTTTCTGTGGTCTTTTGCATCTCAGGAAGATAACCAACAGTAATCCCTTGAAAAGA AACTTAAGTACCTCGGTGTTTTTATTTTTTTTTTCTTATGGAAAAAAATATAAAAGATCACATATACTGATTTTAAAGGCTCCTCAGTCA TTTGGAGCCCTTGGATTAGCAGCATTAATTAAATCTCAAGGGTTTCTTGTAAAGTCCATTTATGTTAATCAAAGTTGAATATAAAAATCC ACCATTGCCTGTTAGCCAGTCAGTTTTAGTCACTGTGAAATATTTCACATTCAGCCTCCATGCAGTAGAGATTTGAGTTTAATTTCATGT CCATGTGACTTTCATGTTTCCTATCTCATAGCTCATGCTACTACATAAGCCAAAACATGTATCTCATCATTGGAAGTAAGATCAGGGCTG ATATTCACCTGGGATAGACAGTATTGGTGAACTACTCATTTACTACAGTGTCTCAGCCTTGATAAGGGGCAGTGGATTGCCTGTTGTTCG GTGTTGTGAATAGCACCTCTGAATAAGATTAGAGTGTTTCTTAATTCATTTCAAACTCTAAAATTAGATTAATGGTGGTGCTAAGAAAGA GTATTAATTACTTTGGGAATGGTCAAAATTAACATTAAAAACATTTTAGACAAAAAGTTTCATTGTACATTCAAAGAAAATGTAAGTTTG GAAGTACTAAAAGACTATTTTATACTTGTTGATTAATCGGAATGTTTGTTGTATGCCTTCATTTTCCATTTCACTTATATGTGTATGTCC ATATATGTTAATTTTCATTGTAGCAAAGCTAATGGAAATAAAGCTAATGCTCTAGTTGAAAGAAAAGGAAAACTCCTGAAATCCTAGAAT GTCTTGTTATTTTTAGCTGACTGTAAAATATTATGAACAGTCTTTGTGTATTGTGCTTAATGCTTTTGTAAGAAACAGAATTTGAAATAT >In-frame_PRIM2_ENST00000607273_chr6_57246966_+_COL21A1_ENST00000370819_chr6_55929420_-_2594nt GGTTTCATATGAACTCTCCCGCCACCCGGGAACAGTGGCTGCCACCGTTTGTGTTTTCCCGAGTTTGAATTCTTGCAGGTGACCAAGATG GAGTTTTCTGGAAGAAAGTGGAGGAAGCTGAGGTTGGCAGGTGACCAGAGGAATGCTTCCTACCCTCATTGCCTTCAGTTTTACTTGCAG CCACCTTCTGAAAACATATCTTTAATAGAATTTGAAAACTTGGCTATTGATAGAGTTAAATTGTTAAAATCAGTTGAAAATCTTGGAGTG AGCTATGTGAAAGGAACTGAACAATACCAGAGTAAGTTGGAGAGTGAGCTTCGGAAGCTCAAGTTTTCCTACAGAGAAAACTTAGAAGAT GAATATGAACCACGAAGAAGAGATCATATTTCTCATTTTATTTTGCGGCTTGCTTATTGCCAGTCTGAAGAACTTAGACGCTGGTTCATT CAACAAGAAATGGATCTCCTTCGATTTAGATTTAGTATTTTACCCAAGGATAAAATTCAGGATTTCTTAAAGGATAGCCAATTGCAGTTT GAGGCTATAAGTGATGAAGAGAAGACTCTTCGAGAACAGGAGATTGTTGCCTCATCACCAAGTTTAAGTGGACTTAAGTTGGGGTTCGAG TCCATTTATAAGATCCCTTTTGCTGATGCTCTGGATTTGTTTCGAGGAAGGAAAGTCTATTTGGAAGATGGCTTTGCTTACGTACCACTT AAGGACATTGTGGCAATCATCCTGAATGAATTTAGAGCCAAACTGTCCAAGGCTTTGGCAGGTCAAAAGGGAGAAAATGGAAGACAGGGA ATTCCAGGGCAACAGGGAATTCAAGGCCATCATGGTGCAAAAGGAGAGAGAGGTGAAAAGGGAGAACCTGGTGTCCGAGGTGCCATTGGA TCAAAAGGAGAATCTGGGGTGGATGGCTTGATGGGGCCCGCAGGTCCTAAGGGGCAACCTGGGGATCCAGGTCCTCAGGGACCCCCAGGT TTGGATGGGAAGCCCGGAAGAGAGTTTTCAGAACAATTTATTCGACAAGTTTGCACAGATGTAATAAGAGCCCAGCTACCAGTCTTACTT CAGAGTGGAAGAATTAGAAATTGTGATCATTGCCTGTCCCAACATGGCTCCCCGGGTATTCCTGGGCCACCTGGTCCGATAGGCCCAGAG GGTCCCAGAGGATTACCTGGTTTGCCAGGAAGAGATGGTGTTCCTGGATTAGTGGGTGTCCCTGGACGTCCAGGTGTCAGAGGATTAAAA GGCCTACCAGGAAGAAATGGGGAAAAAGGGAGCCAAGGGTTTGGGTATCCTGGAGAACAAGGTCCTCCTGGTCCCCCAGGTCCAGAGGGC CCTCCTGGAATAAGCAAAGAAGGTCCTCCAGGAGACCCAGGTCTCCCTGGCAAAGATGGAGACCATGGAAAACCTGGAATCCAAGGGCAA CCAGGCCCCCCAGGCATCTGCGACCCATCACTATGTTTTAGTGTAATTGCCAGAAGAGATCCGTTCAGAAAAGGACCAAACTATTAGTGT CTGATGCCTCATTCAGCAGCCTAGGCATGGTGCTTTTTCTGTGGTCTTTTGCATCTCAGGAAGATAACCAACAGTAATCCCTTGAAAAGA AACTTAAGTACCTCGGTGTTTTTATTTTTTTTTTCTTATGGAAAAAAATATAAAAGATCACATATACTGATTTTAAAGGCTCCTCAGTCA TTTGGAGCCCTTGGATTAGCAGCATTAATTAAATCTCAAGGGTTTCTTGTAAAGTCCATTTATGTTAATCAAAGTTGAATATAAAAATCC ACCATTGCCTGTTAGCCAGTCAGTTTTAGTCACTGTGAAATATTTCACATTCAGCCTCCATGCAGTAGAGATTTGAGTTTAATTTCATGT CCATGTGACTTTCATGTTTCCTATCTCATAGCTCATGCTACTACATAAGCCAAAACATGTATCTCATCATTGGAAGTAAGATCAGGGCTG ATATTCACCTGGGATAGACAGTATTGGTGAACTACTCATTTACTACAGTGTCTCAGCCTTGATAAGGGGCAGTGGATTGCCTGTTGTTCG GTGTTGTGAATAGCACCTCTGAATAAGATTAGAGTGTTTCTTAATTCATTTCAAACTCTAAAATTAGATTAATGGTGGTGCTAAGAAAGA GTATTAATTACTTTGGGAATGGTCAAAATTAACATTAAAAACATTTTAGACAAAAAGTTTCATTGTACATTCAAAGAAAATGTAAGTTTG GAAGTACTAAAAGACTATTTTATACTTGTTGATTAATCGGAATGTTTGTTGTATGCCTTCATTTTCCATTTCACTTATATGTGTATGTCC ATATATGTTAATTTTCATTGTAGCAAAGCTAATGGAAATAAAGCTAATGCTCTAGTTGAAAGAAAAGGAAAACTCCTGAAATCCTAGAAT GTCTTGTTATTTTTAGCTGACTGTAAAATATTATGAACAGTCTTTGTGTATTGTGCTTAATGCTTTTGTAAGAAACAGAATTTGAAATAT >In-frame_PRIM2_ENST00000607273_chr6_57246966_+_COL21A1_ENST00000535941_chr6_55929420_-_2593nt GGTTTCATATGAACTCTCCCGCCACCCGGGAACAGTGGCTGCCACCGTTTGTGTTTTCCCGAGTTTGAATTCTTGCAGGTGACCAAGATG GAGTTTTCTGGAAGAAAGTGGAGGAAGCTGAGGTTGGCAGGTGACCAGAGGAATGCTTCCTACCCTCATTGCCTTCAGTTTTACTTGCAG CCACCTTCTGAAAACATATCTTTAATAGAATTTGAAAACTTGGCTATTGATAGAGTTAAATTGTTAAAATCAGTTGAAAATCTTGGAGTG AGCTATGTGAAAGGAACTGAACAATACCAGAGTAAGTTGGAGAGTGAGCTTCGGAAGCTCAAGTTTTCCTACAGAGAAAACTTAGAAGAT GAATATGAACCACGAAGAAGAGATCATATTTCTCATTTTATTTTGCGGCTTGCTTATTGCCAGTCTGAAGAACTTAGACGCTGGTTCATT CAACAAGAAATGGATCTCCTTCGATTTAGATTTAGTATTTTACCCAAGGATAAAATTCAGGATTTCTTAAAGGATAGCCAATTGCAGTTT GAGGCTATAAGTGATGAAGAGAAGACTCTTCGAGAACAGGAGATTGTTGCCTCATCACCAAGTTTAAGTGGACTTAAGTTGGGGTTCGAG TCCATTTATAAGATCCCTTTTGCTGATGCTCTGGATTTGTTTCGAGGAAGGAAAGTCTATTTGGAAGATGGCTTTGCTTACGTACCACTT AAGGACATTGTGGCAATCATCCTGAATGAATTTAGAGCCAAACTGTCCAAGGCTTTGGCAGGTCAAAAGGGAGAAAATGGAAGACAGGGA ATTCCAGGGCAACAGGGAATTCAAGGCCATCATGGTGCAAAAGGAGAGAGAGGTGAAAAGGGAGAACCTGGTGTCCGAGGTGCCATTGGA TCAAAAGGAGAATCTGGGGTGGATGGCTTGATGGGGCCCGCAGGTCCTAAGGGGCAACCTGGGGATCCAGGTCCTCAGGGACCCCCAGGT TTGGATGGGAAGCCCGGAAGAGAGTTTTCAGAACAATTTATTCGACAAGTTTGCACAGATGTAATAAGAGCCCAGCTACCAGTCTTACTT CAGAGTGGAAGAATTAGAAATTGTGATCATTGCCTGTCCCAACATGGCTCCCCGGGTATTCCTGGGCCACCTGGTCCGATAGGCCCAGAG GGTCCCAGAGGATTACCTGGTTTGCCAGGAAGAGATGGTGTTCCTGGATTAGTGGGTGTCCCTGGACGTCCAGGTGTCAGAGGATTAAAA GGCCTACCAGGAAGAAATGGGGAAAAAGGGAGCCAAGGGTTTGGGTATCCTGGAGAACAAGGTCCTCCTGGTCCCCCAGGTCCAGAGGGC CCTCCTGGAATAAGCAAAGAAGGTCCTCCAGGAGACCCAGGTCTCCCTGGCAAAGATGGAGACCATGGAAAACCTGGAATCCAAGGGCAA CCAGGCCCCCCAGGCATCTGCGACCCATCACTATGTTTTAGTGTAATTGCCAGAAGAGATCCGTTCAGAAAAGGACCAAACTATTAGTGT CTGATGCCTCATTCAGCAGCCTAGGCATGGTGCTTTTTCTGTGGTCTTTTGCATCTCAGGAAGATAACCAACAGTAATCCCTTGAAAAGA AACTTAAGTACCTCGGTGTTTTTATTTTTTTTTTCTTATGGAAAAAAATATAAAAGATCACATATACTGATTTTAAAGGCTCCTCAGTCA TTTGGAGCCCTTGGATTAGCAGCATTAATTAAATCTCAAGGGTTTCTTGTAAAGTCCATTTATGTTAATCAAAGTTGAATATAAAAATCC ACCATTGCCTGTTAGCCAGTCAGTTTTAGTCACTGTGAAATATTTCACATTCAGCCTCCATGCAGTAGAGATTTGAGTTTAATTTCATGT CCATGTGACTTTCATGTTTCCTATCTCATAGCTCATGCTACTACATAAGCCAAAACATGTATCTCATCATTGGAAGTAAGATCAGGGCTG ATATTCACCTGGGATAGACAGTATTGGTGAACTACTCATTTACTACAGTGTCTCAGCCTTGATAAGGGGCAGTGGATTGCCTGTTGTTCG GTGTTGTGAATAGCACCTCTGAATAAGATTAGAGTGTTTCTTAATTCATTTCAAACTCTAAAATTAGATTAATGGTGGTGCTAAGAAAGA GTATTAATTACTTTGGGAATGGTCAAAATTAACATTAAAAACATTTTAGACAAAAAGTTTCATTGTACATTCAAAGAAAATGTAAGTTTG GAAGTACTAAAAGACTATTTTATACTTGTTGATTAATCGGAATGTTTGTTGTATGCCTTCATTTTCCATTTCACTTATATGTGTATGTCC ATATATGTTAATTTTCATTGTAGCAAAGCTAATGGAAATAAAGCTAATGCTCTAGTTGAAAGAAAAGGAAAACTCCTGAAATCCTAGAAT GTCTTGTTATTTTTAGCTGACTGTAAAATATTATGAACAGTCTTTGTGTATTGTGCTTAATGCTTTTGTAAGAAACAGAATTTGAAATAT >In-frame_PRIM2_ENST00000607273_chr6_57246966_+_COL21A1_ENST00000370808_chr6_55929420_-_2491nt GGTTTCATATGAACTCTCCCGCCACCCGGGAACAGTGGCTGCCACCGTTTGTGTTTTCCCGAGTTTGAATTCTTGCAGGTGACCAAGATG GAGTTTTCTGGAAGAAAGTGGAGGAAGCTGAGGTTGGCAGGTGACCAGAGGAATGCTTCCTACCCTCATTGCCTTCAGTTTTACTTGCAG CCACCTTCTGAAAACATATCTTTAATAGAATTTGAAAACTTGGCTATTGATAGAGTTAAATTGTTAAAATCAGTTGAAAATCTTGGAGTG AGCTATGTGAAAGGAACTGAACAATACCAGAGTAAGTTGGAGAGTGAGCTTCGGAAGCTCAAGTTTTCCTACAGAGAAAACTTAGAAGAT GAATATGAACCACGAAGAAGAGATCATATTTCTCATTTTATTTTGCGGCTTGCTTATTGCCAGTCTGAAGAACTTAGACGCTGGTTCATT CAACAAGAAATGGATCTCCTTCGATTTAGATTTAGTATTTTACCCAAGGATAAAATTCAGGATTTCTTAAAGGATAGCCAATTGCAGTTT GAGGCTATAAGTGATGAAGAGAAGACTCTTCGAGAACAGGAGATTGTTGCCTCATCACCAAGTTTAAGTGGACTTAAGTTGGGGTTCGAG TCCATTTATAAGATCCCTTTTGCTGATGCTCTGGATTTGTTTCGAGGAAGGAAAGTCTATTTGGAAGATGGCTTTGCTTACGTACCACTT AAGGACATTGTGGCAATCATCCTGAATGAATTTAGAGCCAAACTGTCCAAGGCTTTGGCAGGTCAAAAGGGAGAAAATGGAAGACAGGGA ATTCCAGGGCAACAGGGAATTCAAGGCCATCATGGTGCAAAAGGAGAGAGAGGTGAAAAGGGAGAACCTGGTGTCCGAGGTGCCATTGGA TCAAAAGGAGAATCTGGGGTGGATGGCTTGATGGGGCCCGCAGGTCCTAAGGGGCAACCTGGGGATCCAGGTCCTCAGGGACCCCCAGGT TTGGATGGGAAGCCCGGAAGAGAGTTTTCAGAACAATTTATTCGACAAGTTTGCACAGATGTAATAAGAGGCCCAGAGGGTCCCAGAGGA TTACCTGGTTTGCCAGGAAGAGATGGTGTTCCTGGATTAGTGGGTGTCCCTGGACGTCCAGGTGTCAGAGGATTAAAAGGCCTACCAGGA AGAAATGGGGAAAAAGGGAGCCAAGGGTTTGGGTATCCTGGAGAACAAGGTCCTCCTGGTCCCCCAGGTCCAGAGGGCCCTCCTGGAATA AGCAAAGAAGGTCCTCCAGGAGACCCAGGTCTCCCTGGCAAAGATGGAGACCATGGAAAACCTGGAATCCAAGGGCAACCAGGCCCCCCA GGCATCTGCGACCCATCACTATGTTTTAGTGTAATTGCCAGAAGAGATCCGTTCAGAAAAGGACCAAACTATTAGTGTCTGATGCCTCAT TCAGCAGCCTAGGCATGGTGCTTTTTCTGTGGTCTTTTGCATCTCAGGAAGATAACCAACAGTAATCCCTTGAAAAGAAACTTAAGTACC TCGGTGTTTTTATTTTTTTTTTCTTATGGAAAAAAATATAAAAGATCACATATACTGATTTTAAAGGCTCCTCAGTCATTTGGAGCCCTT GGATTAGCAGCATTAATTAAATCTCAAGGGTTTCTTGTAAAGTCCATTTATGTTAATCAAAGTTGAATATAAAAATCCACCATTGCCTGT TAGCCAGTCAGTTTTAGTCACTGTGAAATATTTCACATTCAGCCTCCATGCAGTAGAGATTTGAGTTTAATTTCATGTCCATGTGACTTT CATGTTTCCTATCTCATAGCTCATGCTACTACATAAGCCAAAACATGTATCTCATCATTGGAAGTAAGATCAGGGCTGATATTCACCTGG GATAGACAGTATTGGTGAACTACTCATTTACTACAGTGTCTCAGCCTTGATAAGGGGCAGTGGATTGCCTGTTGTTCGGTGTTGTGAATA GCACCTCTGAATAAGATTAGAGTGTTTCTTAATTCATTTCAAACTCTAAAATTAGATTAATGGTGGTGCTAAGAAAGAGTATTAATTACT TTGGGAATGGTCAAAATTAACATTAAAAACATTTTAGACAAAAAGTTTCATTGTACATTCAAAGAAAATGTAAGTTTGGAAGTACTAAAA GACTATTTTATACTTGTTGATTAATCGGAATGTTTGTTGTATGCCTTCATTTTCCATTTCACTTATATGTGTATGTCCATATATGTTAAT TTTCATTGTAGCAAAGCTAATGGAAATAAAGCTAATGCTCTAGTTGAAAGAAAAGGAAAACTCCTGAAATCCTAGAATGTCTTGTTATTT TTAGCTGACTGTAAAATATTATGAACAGTCTTTGTGTATTGTGCTTAATGCTTTTGTAAGAAACAGAATTTGAAATATTTCATCCTTGTC |
Top |
FusionGenePPI for PRIM2_COL21A1 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| PRIM2 | RAE1, ELAVL1, POLA1, PRIM1, POLA2, MMS19, KDM1A, SUV39H1, FAM96B, CIAO1, MOV10, KLHL20, PRPS2, OBFC1, GFOD1, NTRK1, BAG6, USP37, DUSP9, NLGN4Y, RNF31, RGS20, DCAF10, PM20D2, ERP44 | COL21A1 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for PRIM2_COL21A1 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for PRIM2_COL21A1 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Tgene | COL21A1 | C0236736 | Cocaine-Related Disorders | 1 | CTD_human |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
|