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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 28599

FusionGeneSummary for PRDM1_HSPB6

check button Fusion gene summary
Fusion gene informationFusion gene name: PRDM1_HSPB6
Fusion gene ID: 28599
HgeneTgene
Gene symbol

PRDM1

HSPB6

Gene ID

639

126393

Gene namePR/SET domain 1heat shock protein family B (small) member 6
SynonymsBLIMP1|PRDI-BF1HEL55|Hsp20|PPP1R91
Cytomap

6q21

19q13.12

Type of geneprotein-codingprotein-coding
DescriptionPR domain zinc finger protein 1B-lymphocyte-induced maturation protein 1BLIMP-1PR domain 1PR domain containing 1, with ZNF domainPRDI-binding factor-1beta-interferon gene positive-regulatory domain I binding factorheat shock protein beta-6epididymis luminal protein 55heat shock 20 kDa-like protein p20heat shock protein family B (small) member B6heat shock protein, alpha-crystallin-related, B6protein phosphatase 1, regulatory subunit 91
Modification date2018052720180519
UniProtAcc

O75626

O14558

Ensembl transtripts involved in fusion geneENST00000369091, ENST00000369096, 
ENST00000369089, 
ENST00000592984, 
ENST00000004982, ENST00000587965, 
Fusion gene scores* DoF score2 X 2 X 2=81 X 1 X 1=1
# samples 21
** MAII scorelog2(2/8*10)=1.32192809488736log2(1/1*10)=3.32192809488736
Context

PubMed: PRDM1 [Title/Abstract] AND HSPB6 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgenePRDM1

GO:0000122

negative regulation of transcription by RNA polymerase II

1851123

TgeneHSPB6

GO:0045766

positive regulation of angiogenesis

22427880

TgeneHSPB6

GO:0061077

chaperone-mediated protein folding

14717697


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS3.1BM708366PRDM1chr6

106536277

+HSPB6chr19

36246118

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-3UTRENST00000369091ENST00000592984PRDM1chr6

106536277

+HSPB6chr19

36246118

-
5CDS-3UTRENST00000369091ENST00000004982PRDM1chr6

106536277

+HSPB6chr19

36246118

-
5CDS-intronENST00000369091ENST00000587965PRDM1chr6

106536277

+HSPB6chr19

36246118

-
5CDS-3UTRENST00000369096ENST00000592984PRDM1chr6

106536277

+HSPB6chr19

36246118

-
5CDS-3UTRENST00000369096ENST00000004982PRDM1chr6

106536277

+HSPB6chr19

36246118

-
5CDS-intronENST00000369096ENST00000587965PRDM1chr6

106536277

+HSPB6chr19

36246118

-
intron-3UTRENST00000369089ENST00000592984PRDM1chr6

106536277

+HSPB6chr19

36246118

-
intron-3UTRENST00000369089ENST00000004982PRDM1chr6

106536277

+HSPB6chr19

36246118

-
intron-intronENST00000369089ENST00000587965PRDM1chr6

106536277

+HSPB6chr19

36246118

-

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FusionProtFeatures for PRDM1_HSPB6


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
PRDM1

O75626

HSPB6

O14558

Transcription factor that mediates a transcriptionalprogram in various innate and adaptive immune tissue-residentlymphocyte T cell types such as tissue-resident memory T (Trm),natural killer (trNK) and natural killer T (NKT) cells andnegatively regulates gene expression of proteins that promote theegress of tissue-resident T-cell populations from non-lymphoidorgans. Plays a role in the development, retention and long-termestablishment of adaptive and innate tissue-resident lymphocyte Tcell types in non-lymphoid organs, such as the skin and gut, butalso in other nonbarrier tissues like liver and kidney, andtherefore may provide immediate immunological protection againstreactivating infections or viral reinfection (By similarity).Binds specifically to the PRDI element in the promoter of thebeta-interferon gene (PubMed:1851123). Drives the maturation of B-lymphocytes into Ig secreting cells (PubMed:12626569). Associateswith the transcriptional repressor ZNF683 to chromatin at genepromoter regions (By similarity). {ECO:0000250|UniProtKB:Q60636,ECO:0000269|PubMed:12626569, ECO:0000269|PubMed:1851123}. Small heat shock protein which functions as a molecularchaperone probably maintaining denatured proteins in a folding-competent state. Seems to have versatile functions in variousbiological processes. Plays a role in regulating muscle functionsuch as smooth muscle vasorelaxation and cardiac myocytecontractility. May regulate myocardial angiogenesis implicatingKDR. Overexpression mediates cardioprotection and angiogenesisafter induced damage. Stabilizes monomeric YWHAZ therebysupporting YWHAZ chaperone-like activity.{ECO:0000269|PubMed:14717697, ECO:0000269|PubMed:19845507,ECO:0000269|PubMed:20843828, ECO:0000269|PubMed:22427880,ECO:0000305, ECO:0000305|PubMed:22794279}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for PRDM1_HSPB6


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for PRDM1_HSPB6


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for PRDM1_HSPB6


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for PRDM1_HSPB6


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgenePRDM1C0003873Rheumatoid Arthritis3CTD_human
HgenePRDM1C0009324Ulcerative Colitis1CTD_human
HgenePRDM1C0024141Lupus Erythematosus, Systemic1CTD_human
HgenePRDM1C1527336Sjogren's Syndrome1CTD_human
TgeneHSPB6C0018799Heart Diseases1CTD_human
TgeneHSPB6C0041755Adverse reaction to drug1CTD_human