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Fusion gene ID: 28396 |
FusionGeneSummary for PPP2CA_CDKL3 |
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Fusion gene information | Fusion gene name: PPP2CA_CDKL3 | Fusion gene ID: 28396 | Hgene | Tgene | Gene symbol | PPP2CA | CDKL3 | Gene ID | 5515 | 51265 |
Gene name | protein phosphatase 2 catalytic subunit alpha | cyclin dependent kinase like 3 | |
Synonyms | PP2Ac|PP2CA|PP2Calpha|RP-C | NKIAMRE | |
Cytomap | 5q31.1 | 5q31.1 | |
Type of gene | protein-coding | protein-coding | |
Description | serine/threonine-protein phosphatase 2A catalytic subunit alpha isoformPP2A-alphaprotein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoformprotein phosphatase 2, catalytic subunit, alpha isozymereplication protein Cserine/threonine protein | cyclin-dependent kinase-like 3serine-threonine protein kinase NKIAMRE | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | P67775 | Q8IVW4 | |
Ensembl transtripts involved in fusion gene | ENST00000481195, ENST00000231504, | ENST00000609654, ENST00000609383, ENST00000536186, ENST00000435240, ENST00000265334, ENST00000523054, ENST00000521118, ENST00000523832, ENST00000521755, ENST00000435211, ENST00000522501, | |
Fusion gene scores | * DoF score | 9 X 6 X 6=324 | 2 X 2 X 2=8 |
# samples | 10 | 2 | |
** MAII score | log2(10/324*10)=-1.6959938131099 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(2/8*10)=1.32192809488736 | |
Context | PubMed: PPP2CA [Title/Abstract] AND CDKL3 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation | Tumor suppressor gene involved fusion gene, in-frame but not retained their domain. Kinase involved fusion gene, inframe and retained kinase domain. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | BRCA | TCGA-AO-A0JD-01A | PPP2CA | chr5 | 133561451 | - | CDKL3 | chr5 | 133640258 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000481195 | ENST00000609654 | PPP2CA | chr5 | 133561451 | - | CDKL3 | chr5 | 133640258 | - |
In-frame | ENST00000481195 | ENST00000609383 | PPP2CA | chr5 | 133561451 | - | CDKL3 | chr5 | 133640258 | - |
In-frame | ENST00000481195 | ENST00000536186 | PPP2CA | chr5 | 133561451 | - | CDKL3 | chr5 | 133640258 | - |
In-frame | ENST00000481195 | ENST00000435240 | PPP2CA | chr5 | 133561451 | - | CDKL3 | chr5 | 133640258 | - |
In-frame | ENST00000481195 | ENST00000265334 | PPP2CA | chr5 | 133561451 | - | CDKL3 | chr5 | 133640258 | - |
In-frame | ENST00000481195 | ENST00000523054 | PPP2CA | chr5 | 133561451 | - | CDKL3 | chr5 | 133640258 | - |
In-frame | ENST00000481195 | ENST00000521118 | PPP2CA | chr5 | 133561451 | - | CDKL3 | chr5 | 133640258 | - |
5CDS-intron | ENST00000481195 | ENST00000523832 | PPP2CA | chr5 | 133561451 | - | CDKL3 | chr5 | 133640258 | - |
5CDS-intron | ENST00000481195 | ENST00000521755 | PPP2CA | chr5 | 133561451 | - | CDKL3 | chr5 | 133640258 | - |
5CDS-intron | ENST00000481195 | ENST00000435211 | PPP2CA | chr5 | 133561451 | - | CDKL3 | chr5 | 133640258 | - |
5CDS-intron | ENST00000481195 | ENST00000522501 | PPP2CA | chr5 | 133561451 | - | CDKL3 | chr5 | 133640258 | - |
5UTR-3CDS | ENST00000231504 | ENST00000609654 | PPP2CA | chr5 | 133561451 | - | CDKL3 | chr5 | 133640258 | - |
5UTR-3CDS | ENST00000231504 | ENST00000609383 | PPP2CA | chr5 | 133561451 | - | CDKL3 | chr5 | 133640258 | - |
5UTR-3CDS | ENST00000231504 | ENST00000536186 | PPP2CA | chr5 | 133561451 | - | CDKL3 | chr5 | 133640258 | - |
5UTR-3CDS | ENST00000231504 | ENST00000435240 | PPP2CA | chr5 | 133561451 | - | CDKL3 | chr5 | 133640258 | - |
5UTR-3CDS | ENST00000231504 | ENST00000265334 | PPP2CA | chr5 | 133561451 | - | CDKL3 | chr5 | 133640258 | - |
5UTR-3CDS | ENST00000231504 | ENST00000523054 | PPP2CA | chr5 | 133561451 | - | CDKL3 | chr5 | 133640258 | - |
5UTR-3CDS | ENST00000231504 | ENST00000521118 | PPP2CA | chr5 | 133561451 | - | CDKL3 | chr5 | 133640258 | - |
5UTR-intron | ENST00000231504 | ENST00000523832 | PPP2CA | chr5 | 133561451 | - | CDKL3 | chr5 | 133640258 | - |
5UTR-intron | ENST00000231504 | ENST00000521755 | PPP2CA | chr5 | 133561451 | - | CDKL3 | chr5 | 133640258 | - |
5UTR-intron | ENST00000231504 | ENST00000435211 | PPP2CA | chr5 | 133561451 | - | CDKL3 | chr5 | 133640258 | - |
5UTR-intron | ENST00000231504 | ENST00000522501 | PPP2CA | chr5 | 133561451 | - | CDKL3 | chr5 | 133640258 | - |
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FusionProtFeatures for PPP2CA_CDKL3 |
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Hgene | Tgene |
PPP2CA | CDKL3 |
PP2A is the major phosphatase for microtubule-associatedproteins (MAPs). PP2A can modulate the activity of phosphorylase Bkinase casein kinase 2, mitogen-stimulated S6 kinase, and MAP-2kinase. Cooperates with SGO2 to protect centromeric cohesin fromseparase-mediated cleavage in oocytes specifically during meiosisI (By similarity). Can dephosphorylate SV40 large T antigen andp53/TP53. Activates RAF1 by dephosphorylating it at 'Ser-259'.{ECO:0000250, ECO:0000269|PubMed:10801873,ECO:0000269|PubMed:22613722, ECO:0000269|PubMed:9920888}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | >CDKL3 | chr5:133561451 | chr5:133640258 | ENST00000435211 | - | 0 | 9 | 4_286 | -40 | 456 | Domain | Protein kinase |
Tgene | >CDKL3 | chr5:133561451 | chr5:133640258 | ENST00000523832 | - | 0 | 8 | 4_286 | 0 | 456 | Domain | Protein kinase |
Tgene | >CDKL3 | chr5:133561451 | chr5:133640258 | ENST00000435211 | - | 0 | 9 | 44_50 | -40 | 456 | Motif | Note=[NKR]KIAxRE |
Tgene | >CDKL3 | chr5:133561451 | chr5:133640258 | ENST00000523832 | - | 0 | 8 | 44_50 | 0 | 456 | Motif | Note=[NKR]KIAxRE |
Tgene | >CDKL3 | chr5:133561451 | chr5:133640258 | ENST00000435211 | - | 0 | 9 | 10_18 | -40 | 456 | Nucleotide binding | ATP |
Tgene | >CDKL3 | chr5:133561451 | chr5:133640258 | ENST00000523832 | - | 0 | 8 | 10_18 | 0 | 456 | Nucleotide binding | ATP |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | CDKL3 | chr5:133561451 | chr5:133640258 | ENST00000265334 | - | 9 | 13 | 4_286 | 486 | 593 | Domain | Protein kinase |
Tgene | CDKL3 | chr5:133561451 | chr5:133640258 | ENST00000265334 | - | 9 | 13 | 44_50 | 486 | 593 | Motif | Note=[NKR]KIAxRE |
Tgene | CDKL3 | chr5:133561451 | chr5:133640258 | ENST00000265334 | - | 9 | 13 | 10_18 | 486 | 593 | Nucleotide binding | ATP |
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FusionGeneSequence for PPP2CA_CDKL3 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for PPP2CA_CDKL3 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
PPP2CA | TRIP13, TBCD, ARL2, TLX1, ISYNA1, MRPS26, PTN, CSNK1A1, PPM1B, CDK2, CDK6, ETF1, RELA, CCNG2, PPP2R5C, PXN, PPP2R3B, PPP2R3A, PPP2R2A, BEST1, CTTNBP2, CTTNBP2NL, STRIP1, MOB4, PDCD10, PPP2R1A, STRN, STRN3, PPP2R5D, PPP2R1B, STRN4, PPP2R2D, PPME1, PPP2R5E, PPFIA1, IGBP1, CCT2, CCT8, CCT3, TCP1, CCT5, CCT6A, CCT7, PPFIA3, PPP2R5A, CCT4, PPFIA2, FGFR1OP, PPP2R5B, STK26, SIKE1, STK24, STK25, TRAF3IP3, PPP2R2C, PRKCD, BCL2, SGK1, SPRY2, PMS2, RBL2, HDAC7, HDAC4, HDAC5, MID1, INTS1, INTS6, PRKDC, TERF1, IRAK1, PRR14L, SGOL1, PRR14, TUBA8, ANKLE2, CEP350, SLMAP, KPNB1, PPP2R2B, PPP2R4, FGFR1OP2, PRKAA1, RALA, AXIN1, MYC, MAPK3, AKT1, CHEK2, TWIST1, PABPC1, CUL3, CUL5, CUL1, MAP3K3, CHUK, IKBKB, IKBKG, VCP, CAV1, PSMC6, NUBP2, CLNS1A, PIN1, DDTL, PIR, PSMD1, SOD1, PSMD3, AURKB, BRCA1, ECT2, MDC1, PAXIP1, CBX5, NOTCH1, KLHL15, SMURF1, VCAM1, FN1, ITGA4, CFTR, RAF1, CTDP1, ID1, NPM1, POLA1, BAG3, CDKN2C, MYH9, XRN1, NRD1, AHCYL1, ARPC4, HNRNPH1, NIF3L1, PFDN1, SSB, TNPO1, TNPO3, RPA3, RPA2, RPA1, ZNF346, HTT, ESPL1, ZFP36, SETBP1, VAC14, EP300, DAPK1, UNC5B, PYGM, CSNK2B, DEC1, RORC, FOXS1, LCMT1, SERTAD4, GRN, SGOL2, KNG1, ZNF114, FOXD4L6, LACC1, SIK2, CAMK1, RPS6KB2, TIPRL, UNK, FNBP1, PPAT, PPP2CB, NTRK1, RAC1, PIM1, AHI1, FECH, NPTX1, PCM1, PPP4R1, PPP4C, RP9, CCDC6, CEP131, PKN3, ATP6V1D, CPSF3L, INTS10, INTS9, INTS12, STRIP2, INTS2, INTS5, INTS4, USP7, ESR1, CDC20, CDC27, NOSIP, ESRRB, CARD11, BCL10, AMBRA1, KISS1R, AR, DUSP19, ARHGEF2, ENSA, FAM122A, FAM122B, FBXL16, TBC1D4, TTC33, UNG, WDR61, PTPDC1, FOXD4, TBCCD1, CDCA4, NCAPD3, FAM19A3, ZNF331, RFWD2, LRRC56, WNT7A, ZNF550, ZNF517, EEF1A1, ZNF785, ZFC3H1, ZNF764, TINAG, KLHDC8A, WDR86, PAK1, VHL, AKT3, AKT2, BRCA2, TRIM25, CCND2, CEBPA, URI1, TRIM28 | CDKL3 | APP, GGA1, SNRNP70, TTF2, CDK6, SRPK1, GOLGA2, MDFI, TRIM27, ZBTB14, FXR2, MTUS2, LZTS2, ATG4A, PIH1D3, CCDC155, KRTAP10-9, ZBTB8A, STAMBP, KRAS, HSPA8 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for PPP2CA_CDKL3 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PPP2CA_CDKL3 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | PPP2CA | C0004096 | Asthma | 1 | CTD_human |
Hgene | PPP2CA | C0018799 | Heart Diseases | 1 | CTD_human |
Hgene | PPP2CA | C0151744 | Myocardial Ischemia | 1 | CTD_human |