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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 28396

FusionGeneSummary for PPP2CA_CDKL3

check button Fusion gene summary
Fusion gene informationFusion gene name: PPP2CA_CDKL3
Fusion gene ID: 28396
HgeneTgene
Gene symbol

PPP2CA

CDKL3

Gene ID

5515

51265

Gene nameprotein phosphatase 2 catalytic subunit alphacyclin dependent kinase like 3
SynonymsPP2Ac|PP2CA|PP2Calpha|RP-CNKIAMRE
Cytomap

5q31.1

5q31.1

Type of geneprotein-codingprotein-coding
Descriptionserine/threonine-protein phosphatase 2A catalytic subunit alpha isoformPP2A-alphaprotein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoformprotein phosphatase 2, catalytic subunit, alpha isozymereplication protein Cserine/threonine proteincyclin-dependent kinase-like 3serine-threonine protein kinase NKIAMRE
Modification date2018052320180523
UniProtAcc

P67775

Q8IVW4

Ensembl transtripts involved in fusion geneENST00000481195, ENST00000231504, 
ENST00000609654, ENST00000609383, 
ENST00000536186, ENST00000435240, 
ENST00000265334, ENST00000523054, 
ENST00000521118, ENST00000523832, 
ENST00000521755, ENST00000435211, 
ENST00000522501, 
Fusion gene scores* DoF score9 X 6 X 6=3242 X 2 X 2=8
# samples 102
** MAII scorelog2(10/324*10)=-1.6959938131099
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(2/8*10)=1.32192809488736
Context

PubMed: PPP2CA [Title/Abstract] AND CDKL3 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotationTumor suppressor gene involved fusion gene, in-frame but not retained their domain.
Kinase involved fusion gene, inframe and retained kinase domain.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVBRCATCGA-AO-A0JD-01APPP2CAchr5

133561451

-CDKL3chr5

133640258

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000481195ENST00000609654PPP2CAchr5

133561451

-CDKL3chr5

133640258

-
In-frameENST00000481195ENST00000609383PPP2CAchr5

133561451

-CDKL3chr5

133640258

-
In-frameENST00000481195ENST00000536186PPP2CAchr5

133561451

-CDKL3chr5

133640258

-
In-frameENST00000481195ENST00000435240PPP2CAchr5

133561451

-CDKL3chr5

133640258

-
In-frameENST00000481195ENST00000265334PPP2CAchr5

133561451

-CDKL3chr5

133640258

-
In-frameENST00000481195ENST00000523054PPP2CAchr5

133561451

-CDKL3chr5

133640258

-
In-frameENST00000481195ENST00000521118PPP2CAchr5

133561451

-CDKL3chr5

133640258

-
5CDS-intronENST00000481195ENST00000523832PPP2CAchr5

133561451

-CDKL3chr5

133640258

-
5CDS-intronENST00000481195ENST00000521755PPP2CAchr5

133561451

-CDKL3chr5

133640258

-
5CDS-intronENST00000481195ENST00000435211PPP2CAchr5

133561451

-CDKL3chr5

133640258

-
5CDS-intronENST00000481195ENST00000522501PPP2CAchr5

133561451

-CDKL3chr5

133640258

-
5UTR-3CDSENST00000231504ENST00000609654PPP2CAchr5

133561451

-CDKL3chr5

133640258

-
5UTR-3CDSENST00000231504ENST00000609383PPP2CAchr5

133561451

-CDKL3chr5

133640258

-
5UTR-3CDSENST00000231504ENST00000536186PPP2CAchr5

133561451

-CDKL3chr5

133640258

-
5UTR-3CDSENST00000231504ENST00000435240PPP2CAchr5

133561451

-CDKL3chr5

133640258

-
5UTR-3CDSENST00000231504ENST00000265334PPP2CAchr5

133561451

-CDKL3chr5

133640258

-
5UTR-3CDSENST00000231504ENST00000523054PPP2CAchr5

133561451

-CDKL3chr5

133640258

-
5UTR-3CDSENST00000231504ENST00000521118PPP2CAchr5

133561451

-CDKL3chr5

133640258

-
5UTR-intronENST00000231504ENST00000523832PPP2CAchr5

133561451

-CDKL3chr5

133640258

-
5UTR-intronENST00000231504ENST00000521755PPP2CAchr5

133561451

-CDKL3chr5

133640258

-
5UTR-intronENST00000231504ENST00000435211PPP2CAchr5

133561451

-CDKL3chr5

133640258

-
5UTR-intronENST00000231504ENST00000522501PPP2CAchr5

133561451

-CDKL3chr5

133640258

-

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FusionProtFeatures for PPP2CA_CDKL3


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
PPP2CA

P67775

CDKL3

Q8IVW4

PP2A is the major phosphatase for microtubule-associatedproteins (MAPs). PP2A can modulate the activity of phosphorylase Bkinase casein kinase 2, mitogen-stimulated S6 kinase, and MAP-2kinase. Cooperates with SGO2 to protect centromeric cohesin fromseparase-mediated cleavage in oocytes specifically during meiosisI (By similarity). Can dephosphorylate SV40 large T antigen andp53/TP53. Activates RAF1 by dephosphorylating it at 'Ser-259'.{ECO:0000250, ECO:0000269|PubMed:10801873,ECO:0000269|PubMed:22613722, ECO:0000269|PubMed:9920888}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
>>>>>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneCDKL3chr5:133561451chr5:133640258ENST00000435211-094_286-40456DomainProtein kinase
TgeneCDKL3chr5:133561451chr5:133640258ENST00000523832-084_2860456DomainProtein kinase
TgeneCDKL3chr5:133561451chr5:133640258ENST00000435211-0944_50-40456MotifNote=[NKR]KIAxRE
TgeneCDKL3chr5:133561451chr5:133640258ENST00000523832-0844_500456MotifNote=[NKR]KIAxRE
TgeneCDKL3chr5:133561451chr5:133640258ENST00000435211-0910_18-40456Nucleotide bindingATP
TgeneCDKL3chr5:133561451chr5:133640258ENST00000523832-0810_180456Nucleotide bindingATP

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneCDKL3chr5:133561451chr5:133640258ENST00000265334-9134_286486593DomainProtein kinase
TgeneCDKL3chr5:133561451chr5:133640258ENST00000265334-91344_50486593MotifNote=[NKR]KIAxRE
TgeneCDKL3chr5:133561451chr5:133640258ENST00000265334-91310_18486593Nucleotide bindingATP


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FusionGeneSequence for PPP2CA_CDKL3


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for PPP2CA_CDKL3


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
PPP2CATRIP13, TBCD, ARL2, TLX1, ISYNA1, MRPS26, PTN, CSNK1A1, PPM1B, CDK2, CDK6, ETF1, RELA, CCNG2, PPP2R5C, PXN, PPP2R3B, PPP2R3A, PPP2R2A, BEST1, CTTNBP2, CTTNBP2NL, STRIP1, MOB4, PDCD10, PPP2R1A, STRN, STRN3, PPP2R5D, PPP2R1B, STRN4, PPP2R2D, PPME1, PPP2R5E, PPFIA1, IGBP1, CCT2, CCT8, CCT3, TCP1, CCT5, CCT6A, CCT7, PPFIA3, PPP2R5A, CCT4, PPFIA2, FGFR1OP, PPP2R5B, STK26, SIKE1, STK24, STK25, TRAF3IP3, PPP2R2C, PRKCD, BCL2, SGK1, SPRY2, PMS2, RBL2, HDAC7, HDAC4, HDAC5, MID1, INTS1, INTS6, PRKDC, TERF1, IRAK1, PRR14L, SGOL1, PRR14, TUBA8, ANKLE2, CEP350, SLMAP, KPNB1, PPP2R2B, PPP2R4, FGFR1OP2, PRKAA1, RALA, AXIN1, MYC, MAPK3, AKT1, CHEK2, TWIST1, PABPC1, CUL3, CUL5, CUL1, MAP3K3, CHUK, IKBKB, IKBKG, VCP, CAV1, PSMC6, NUBP2, CLNS1A, PIN1, DDTL, PIR, PSMD1, SOD1, PSMD3, AURKB, BRCA1, ECT2, MDC1, PAXIP1, CBX5, NOTCH1, KLHL15, SMURF1, VCAM1, FN1, ITGA4, CFTR, RAF1, CTDP1, ID1, NPM1, POLA1, BAG3, CDKN2C, MYH9, XRN1, NRD1, AHCYL1, ARPC4, HNRNPH1, NIF3L1, PFDN1, SSB, TNPO1, TNPO3, RPA3, RPA2, RPA1, ZNF346, HTT, ESPL1, ZFP36, SETBP1, VAC14, EP300, DAPK1, UNC5B, PYGM, CSNK2B, DEC1, RORC, FOXS1, LCMT1, SERTAD4, GRN, SGOL2, KNG1, ZNF114, FOXD4L6, LACC1, SIK2, CAMK1, RPS6KB2, TIPRL, UNK, FNBP1, PPAT, PPP2CB, NTRK1, RAC1, PIM1, AHI1, FECH, NPTX1, PCM1, PPP4R1, PPP4C, RP9, CCDC6, CEP131, PKN3, ATP6V1D, CPSF3L, INTS10, INTS9, INTS12, STRIP2, INTS2, INTS5, INTS4, USP7, ESR1, CDC20, CDC27, NOSIP, ESRRB, CARD11, BCL10, AMBRA1, KISS1R, AR, DUSP19, ARHGEF2, ENSA, FAM122A, FAM122B, FBXL16, TBC1D4, TTC33, UNG, WDR61, PTPDC1, FOXD4, TBCCD1, CDCA4, NCAPD3, FAM19A3, ZNF331, RFWD2, LRRC56, WNT7A, ZNF550, ZNF517, EEF1A1, ZNF785, ZFC3H1, ZNF764, TINAG, KLHDC8A, WDR86, PAK1, VHL, AKT3, AKT2, BRCA2, TRIM25, CCND2, CEBPA, URI1, TRIM28CDKL3APP, GGA1, SNRNP70, TTF2, CDK6, SRPK1, GOLGA2, MDFI, TRIM27, ZBTB14, FXR2, MTUS2, LZTS2, ATG4A, PIH1D3, CCDC155, KRTAP10-9, ZBTB8A, STAMBP, KRAS, HSPA8


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for PPP2CA_CDKL3


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for PPP2CA_CDKL3


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgenePPP2CAC0004096Asthma1CTD_human
HgenePPP2CAC0018799Heart Diseases1CTD_human
HgenePPP2CAC0151744Myocardial Ischemia1CTD_human