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Fusion gene ID: 27900 |
FusionGeneSummary for POGZ_THEM4 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: POGZ_THEM4 | Fusion gene ID: 27900 | Hgene | Tgene | Gene symbol | POGZ | THEM4 | Gene ID | 23126 | 117145 |
| Gene name | pogo transposable element derived with ZNF domain | thioesterase superfamily member 4 | |
| Synonyms | MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m | CTMP | |
| Cytomap | 1q21.3 | 1q21.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | pogo transposable element with ZNF domainputative protein product of Nbla00003zinc finger protein 280Ezinc finger protein 635 | acyl-coenzyme A thioesterase THEM4C-terminal modulator proteinacyl-CoA thioesterase THEM4carboxyl-terminal modulator protein | |
| Modification date | 20180523 | 20180522 | |
| UniProtAcc | Q7Z3K3 | Q5T1C6 | |
| Ensembl transtripts involved in fusion gene | ENST00000392723, ENST00000361398, ENST00000271715, ENST00000368863, ENST00000409503, ENST00000531094, ENST00000540984, ENST00000491586, | ENST00000368814, ENST00000477437, ENST00000489410, | |
| Fusion gene scores | * DoF score | 8 X 6 X 6=288 | 4 X 4 X 4=64 |
| # samples | 8 | 4 | |
| ** MAII score | log2(8/288*10)=-1.84799690655495 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(4/64*10)=-0.678071905112638 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: POGZ [Title/Abstract] AND THEM4 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Tgene | THEM4 | GO:0006631 | fatty acid metabolic process | 22871024 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | LD | BRCA | TCGA-AN-A0FW-01A | POGZ | chr1 | 151400299 | - | THEM4 | chr1 | 151867670 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| Frame-shift | ENST00000392723 | ENST00000368814 | POGZ | chr1 | 151400299 | - | THEM4 | chr1 | 151867670 | - |
| 5CDS-intron | ENST00000392723 | ENST00000477437 | POGZ | chr1 | 151400299 | - | THEM4 | chr1 | 151867670 | - |
| 5CDS-intron | ENST00000392723 | ENST00000489410 | POGZ | chr1 | 151400299 | - | THEM4 | chr1 | 151867670 | - |
| Frame-shift | ENST00000361398 | ENST00000368814 | POGZ | chr1 | 151400299 | - | THEM4 | chr1 | 151867670 | - |
| 5CDS-intron | ENST00000361398 | ENST00000477437 | POGZ | chr1 | 151400299 | - | THEM4 | chr1 | 151867670 | - |
| 5CDS-intron | ENST00000361398 | ENST00000489410 | POGZ | chr1 | 151400299 | - | THEM4 | chr1 | 151867670 | - |
| Frame-shift | ENST00000271715 | ENST00000368814 | POGZ | chr1 | 151400299 | - | THEM4 | chr1 | 151867670 | - |
| 5CDS-intron | ENST00000271715 | ENST00000477437 | POGZ | chr1 | 151400299 | - | THEM4 | chr1 | 151867670 | - |
| 5CDS-intron | ENST00000271715 | ENST00000489410 | POGZ | chr1 | 151400299 | - | THEM4 | chr1 | 151867670 | - |
| Frame-shift | ENST00000368863 | ENST00000368814 | POGZ | chr1 | 151400299 | - | THEM4 | chr1 | 151867670 | - |
| 5CDS-intron | ENST00000368863 | ENST00000477437 | POGZ | chr1 | 151400299 | - | THEM4 | chr1 | 151867670 | - |
| 5CDS-intron | ENST00000368863 | ENST00000489410 | POGZ | chr1 | 151400299 | - | THEM4 | chr1 | 151867670 | - |
| Frame-shift | ENST00000409503 | ENST00000368814 | POGZ | chr1 | 151400299 | - | THEM4 | chr1 | 151867670 | - |
| 5CDS-intron | ENST00000409503 | ENST00000477437 | POGZ | chr1 | 151400299 | - | THEM4 | chr1 | 151867670 | - |
| 5CDS-intron | ENST00000409503 | ENST00000489410 | POGZ | chr1 | 151400299 | - | THEM4 | chr1 | 151867670 | - |
| Frame-shift | ENST00000531094 | ENST00000368814 | POGZ | chr1 | 151400299 | - | THEM4 | chr1 | 151867670 | - |
| 5CDS-intron | ENST00000531094 | ENST00000477437 | POGZ | chr1 | 151400299 | - | THEM4 | chr1 | 151867670 | - |
| 5CDS-intron | ENST00000531094 | ENST00000489410 | POGZ | chr1 | 151400299 | - | THEM4 | chr1 | 151867670 | - |
| intron-3CDS | ENST00000540984 | ENST00000368814 | POGZ | chr1 | 151400299 | - | THEM4 | chr1 | 151867670 | - |
| intron-intron | ENST00000540984 | ENST00000477437 | POGZ | chr1 | 151400299 | - | THEM4 | chr1 | 151867670 | - |
| intron-intron | ENST00000540984 | ENST00000489410 | POGZ | chr1 | 151400299 | - | THEM4 | chr1 | 151867670 | - |
| Frame-shift | ENST00000491586 | ENST00000368814 | POGZ | chr1 | 151400299 | - | THEM4 | chr1 | 151867670 | - |
| 5CDS-intron | ENST00000491586 | ENST00000477437 | POGZ | chr1 | 151400299 | - | THEM4 | chr1 | 151867670 | - |
| 5CDS-intron | ENST00000491586 | ENST00000489410 | POGZ | chr1 | 151400299 | - | THEM4 | chr1 | 151867670 | - |
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FusionProtFeatures for POGZ_THEM4 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| POGZ | THEM4 |
| Has acyl-CoA thioesterase activity towards medium andlong-chain (C14 to C18) fatty acyl-CoA substrates, and probablyplays an role in mitochondrial fatty acid metabolism. Plays a rolein the apoptotic process, possibly via its regulation of AKT1activity. According to PubMed:11598301, inhibits AKT1phosphorylation and activity. According to PubMed:17615157,enhances AKT1 activity by favoring its phosphorylation andtranslocation to plasma membrane. {ECO:0000269|PubMed:11598301,ECO:0000269|PubMed:17615157, ECO:0000269|PubMed:19168129,ECO:0000269|PubMed:19421406, ECO:0000269|PubMed:19453107,ECO:0000269|PubMed:22871024}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for POGZ_THEM4 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for POGZ_THEM4 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| POGZ | SP1, CREB1, NFYC, VAV2, CBX1, CBX3, SIRT7, APP, MDC1, CBX5, CDK6, DAB1, GABPB1, NFYA, NRF1, POU2F1, HGS, DAZAP2, ZBTB24, RBPMS, BANP, ZXDC, PRR20A, ENO1, MOV10, NXF1, HIST3H3, HDGFRP2, MAD2L2, CHAMP1, ZMYM4, EED, RNF2, SUMO2, TMEM171, XPO1, ING4, FOXG1, FOXJ2, FOXQ1, USP37, NFATC2, ZNF428, ZNF576, LCOR, CD4, NR3C1 | THEM4 | AKT1, GPT2, GSTT2, PDSS1, ALAS1, PDSS2, DBT, ENOPH1, FPGS, SIRT5, KIAA0391, CARD9, CLDN18, KLC2, TOP3A |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for POGZ_THEM4 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for POGZ_THEM4 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Tgene | THEM4 | C2239176 | Liver carcinoma | 1 | CTD_human |
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