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Fusion gene ID: 2783 |
FusionGeneSummary for ARNT2_NDST1 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: ARNT2_NDST1 | Fusion gene ID: 2783 | Hgene | Tgene | Gene symbol | ARNT2 | NDST1 | Gene ID | 9915 | 3340 |
| Gene name | aryl hydrocarbon receptor nuclear translocator 2 | N-deacetylase and N-sulfotransferase 1 | |
| Synonyms | WEDAS|bHLHe1 | HSST|MRT46|NST1 | |
| Cytomap | 15q25.1 | 5q33.1 | |
| Type of gene | protein-coding | protein-coding | |
| Description | aryl hydrocarbon receptor nuclear translocator 2ARNT protein 2class E basic helix-loop-helix protein 1 | bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1HSNST 1N-Deacetylase-N-sulfotransferase 1N-HSST 1N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1N-deacetylase/N-sulfotransferase 1N-heparan sulfate sulfotransferase 1NDST-1[H | |
| Modification date | 20180519 | 20180519 | |
| UniProtAcc | Q9HBZ2 | P52848 | |
| Ensembl transtripts involved in fusion gene | ENST00000303329, ENST00000533983, ENST00000527771, ENST00000531595, | ENST00000523767, ENST00000261797, ENST00000521752, | |
| Fusion gene scores | * DoF score | 7 X 5 X 5=175 | 3 X 3 X 3=27 |
| # samples | 7 | 3 | |
| ** MAII score | log2(7/175*10)=-1.32192809488736 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(3/27*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
| Context | PubMed: ARNT2 [Title/Abstract] AND NDST1 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | ARNT2 | GO:0001666 | response to hypoxia | 12239177 |
| Hgene | ARNT2 | GO:0006355 | regulation of transcription, DNA-templated | 11782478 |
| Hgene | ARNT2 | GO:0045944 | positive regulation of transcription by RNA polymerase II | 24465693 |
| Tgene | NDST1 | GO:0015012 | heparan sulfate proteoglycan biosynthetic process | 9915799 |
| Tgene | NDST1 | GO:0015014 | heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process | 9915799 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | PRAD | TCGA-HC-7748-01A | ARNT2 | chr15 | 80889603 | + | NDST1 | chr5 | 149915262 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 3UTR-3CDS | ENST00000303329 | ENST00000523767 | ARNT2 | chr15 | 80889603 | + | NDST1 | chr5 | 149915262 | + |
| 3UTR-3CDS | ENST00000303329 | ENST00000261797 | ARNT2 | chr15 | 80889603 | + | NDST1 | chr5 | 149915262 | + |
| 3UTR-intron | ENST00000303329 | ENST00000521752 | ARNT2 | chr15 | 80889603 | + | NDST1 | chr5 | 149915262 | + |
| 3UTR-3CDS | ENST00000533983 | ENST00000523767 | ARNT2 | chr15 | 80889603 | + | NDST1 | chr5 | 149915262 | + |
| 3UTR-3CDS | ENST00000533983 | ENST00000261797 | ARNT2 | chr15 | 80889603 | + | NDST1 | chr5 | 149915262 | + |
| 3UTR-intron | ENST00000533983 | ENST00000521752 | ARNT2 | chr15 | 80889603 | + | NDST1 | chr5 | 149915262 | + |
| intron-3CDS | ENST00000527771 | ENST00000523767 | ARNT2 | chr15 | 80889603 | + | NDST1 | chr5 | 149915262 | + |
| intron-3CDS | ENST00000527771 | ENST00000261797 | ARNT2 | chr15 | 80889603 | + | NDST1 | chr5 | 149915262 | + |
| intron-intron | ENST00000527771 | ENST00000521752 | ARNT2 | chr15 | 80889603 | + | NDST1 | chr5 | 149915262 | + |
| intron-3CDS | ENST00000531595 | ENST00000523767 | ARNT2 | chr15 | 80889603 | + | NDST1 | chr5 | 149915262 | + |
| intron-3CDS | ENST00000531595 | ENST00000261797 | ARNT2 | chr15 | 80889603 | + | NDST1 | chr5 | 149915262 | + |
| intron-intron | ENST00000531595 | ENST00000521752 | ARNT2 | chr15 | 80889603 | + | NDST1 | chr5 | 149915262 | + |
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FusionProtFeatures for ARNT2_NDST1 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| ARNT2 | NDST1 |
| Transcription factor that plays a role in thedevelopment of the hypothalamo-pituitary axis, postnatal braingrowth, and visual and renal function (PubMed:24022475).Specifically recognizes the xenobiotic response element (XRE).{ECO:0000269|PubMed:24022475}. | Essential bifunctional enzyme that catalyzes both the N-deacetylation and the N-sulfation of glucosamine (GlcNAc) of theglycosaminoglycan in heparan sulfate. Modifies the GlcNAc-GlcAdisaccharide repeating sugar backbone to make N-sulfatedheparosan, a prerequisite substrate for later modifications inheparin biosynthesis (PubMed:10758005, PubMed:12634318). Plays arole in determining the extent and pattern of sulfation of heparansulfate. Compared to other NDST enzymes, its presence isabsolutely required. Participates in biosynthesis of heparansulfate that can ultimately serve as L-selectin ligands, therebyplaying a role in inflammatory response (PubMed:10758005,PubMed:12634318). Required for the exosomal release of SDCBP, CD63and syndecan (PubMed:22660413). {ECO:0000269|PubMed:10758005,ECO:0000269|PubMed:12634318, ECO:0000269|PubMed:22660413}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for ARNT2_NDST1 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for ARNT2_NDST1 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| ARNT2 | NPAS4, SIM2, EPAS1, BCL6, USP7, APP, SH3GL2, TAX1BP3, BZRAP1, NPAS2, CTBP1, ADAMTSL4, CALCOCO2, CCDC33, CDR2, CEP57L1, CEP63, DTX2, DYDC1, GOLGA2, HIF1A, IKZF3, KIFC3, LZTS2, MAGEA4, MEIS2, MEOX2, MIPOL1, MTUS2, NCOA3, PDE4DIP, PLSCR1, RBCK1, REL, RFX6, RIMBP3, RINT1, SORBS3, SPAG5, SSBP3, SSX2IP, SYCE1, TACC3, TADA2A, TFIP11, TRAF1, TRAF2, TRAF4, TRIM23, TRIM27, TRIM37, TRIM42, TRIP6, USHBP1, VPS52, ZNF341, DGCR6, NDE1, NPAS3, AHR, NPAS1, CLPP, FNTA, FNTB | NDST1 | CPEB4, TAZ, IDS, PLAUR, HLA-E, NAAA, XRCC5, TMEM132A, CD83, NRROS |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for ARNT2_NDST1 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for ARNT2_NDST1 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Tgene | NDST1 | C0015393 | Eye Abnormalities | 1 | CTD_human |
| Tgene | NDST1 | C0376634 | Craniofacial Abnormalities | 1 | CTD_human |
| Tgene | NDST1 | C1955869 | Malformations of Cortical Development | 1 | CTD_human |
| Tgene | NDST1 | C3714756 | Intellectual Disability | 1 | CTD_human;HPO |
| Tgene | NDST1 | C4015283 | MENTAL RETARDATION, AUTOSOMAL RECESSIVE 46 | 1 | UNIPROT |
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