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Fusion gene ID: 27823 |
FusionGeneSummary for PNISR_TAF1D |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: PNISR_TAF1D | Fusion gene ID: 27823 | Hgene | Tgene | Gene symbol | PNISR | TAF1D | Gene ID | 25957 | 79101 |
| Gene name | PNN interacting serine and arginine rich protein | TATA-box binding protein associated factor, RNA polymerase I subunit D | |
| Synonyms | C6orf111|HSPC306|SFRS18|SRrp130|bA98I9.2 | JOSD3|RAFI41|TAF(I)41|TAFI41 | |
| Cytomap | 6q16.2 | 11q21 | |
| Type of gene | protein-coding | protein-coding | |
| Description | arginine/serine-rich protein PNISRPNN-interacting serine/arginine-rich proteinSR-related proteinSR-rich proteinserine-arginine-rich-splicing regulatory protein 130splicing factor, arginine/serine-rich 130splicing factor, arginine/serine-rich 18 | TATA box-binding protein-associated factor RNA polymerase I subunit DJosephin domain containing 3RNA polymerase I-specific TBP-associated factor 41 kDaTATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDaTATA box-binding protein | |
| Modification date | 20180519 | 20180523 | |
| UniProtAcc | Q8TF01 | Q9H5J8 | |
| Ensembl transtripts involved in fusion gene | ENST00000369239, ENST00000438806, ENST00000466057, | ENST00000546088, ENST00000448108, | |
| Fusion gene scores | * DoF score | 3 X 4 X 2=24 | 6 X 6 X 4=144 |
| # samples | 5 | 7 | |
| ** MAII score | log2(5/24*10)=1.05889368905357 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(7/144*10)=-1.04064198449735 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: PNISR [Title/Abstract] AND TAF1D [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | LD | BRCA | TCGA-JL-A3YW-01A | PNISR | chr6 | 99858617 | - | TAF1D | chr11 | 93465457 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5CDS-5UTR | ENST00000369239 | ENST00000546088 | PNISR | chr6 | 99858617 | - | TAF1D | chr11 | 93465457 | - |
| 5CDS-intron | ENST00000369239 | ENST00000448108 | PNISR | chr6 | 99858617 | - | TAF1D | chr11 | 93465457 | - |
| 5CDS-5UTR | ENST00000438806 | ENST00000546088 | PNISR | chr6 | 99858617 | - | TAF1D | chr11 | 93465457 | - |
| 5CDS-intron | ENST00000438806 | ENST00000448108 | PNISR | chr6 | 99858617 | - | TAF1D | chr11 | 93465457 | - |
| intron-5UTR | ENST00000466057 | ENST00000546088 | PNISR | chr6 | 99858617 | - | TAF1D | chr11 | 93465457 | - |
| intron-intron | ENST00000466057 | ENST00000448108 | PNISR | chr6 | 99858617 | - | TAF1D | chr11 | 93465457 | - |
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FusionProtFeatures for PNISR_TAF1D |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| PNISR | TAF1D |
| Component of the transcription factor SL1/TIF-IBcomplex, which is involved in the assembly of the PIC(preinitiation complex) during RNA polymerase I-dependenttranscription. The rate of PIC formation probably is primarilydependent on the rate of association of SL1/TIF-IB with the rDNApromoter. SL1/TIF-IB is involved in stabilization of nucleolartranscription factor 1/UBTF on rDNA. Formation of SL1/TIF-IBexcludes the association of TBP with TFIID subunits.{ECO:0000269|PubMed:15970593, ECO:0000269|PubMed:17318177}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for PNISR_TAF1D |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for PNISR_TAF1D |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| PNISR | PNN, APC, RPS24, MOV10, NXF1, HSPB1, RBM39, SETD1A, SRSF11, EWSR1, SRPK2, XPO1, CDC42, BAG3, EDEM1, PIP4K2A, CAMKV, CD2BP2 | TAF1D | POLB, PTN, HAP1, CENPB, CSNK2A1, CSNK2A2, CSNK2B, IPO5, TBP, TAF1C, TAF1B, TAF1A, POLR1C, PSME3, POLR1A, RRP15, RRN3, PPAN, POLR1E, POLR1B, TWISTNB, RPL6P1, UBTF, MYBBP1A, IMMT, CEP70, RPL36AL, ITFG1, HSP90AB1, FEZ1, TMSB4X, SMARCB1, EZH2, DDAH2, MCM3AP, FAM20C, ING5, UBE2D1, LRIF1, FAF1, NGEF, RPL14, EAF1, NPM1, MAPK8, NAF1, TRIM44, MECP2, RPL18A, RRP8, RBM34, RPS14, ZNF2, MCPH1 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for PNISR_TAF1D |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PNISR_TAF1D |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Tgene | TAF1D | C0037274 | Dermatologic disorders | 1 | CTD_human |
| Tgene | TAF1D | C0311375 | Arsenic Poisoning | 1 | CTD_human |
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