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Fusion gene ID: 27746 |
FusionGeneSummary for PLXNB1_HINT1 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: PLXNB1_HINT1 | Fusion gene ID: 27746 | Hgene | Tgene | Gene symbol | PLXNB1 | HINT1 | Gene ID | 5364 | 3094 |
| Gene name | plexin B1 | histidine triad nucleotide binding protein 1 | |
| Synonyms | PLEXIN-B1|PLXN5|SEP | HINT|NMAN|PKCI-1|PRKCNH1 | |
| Cytomap | 3p21.31 | 5q23.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | plexin-B1plexin 5semaphorin receptor SEP | histidine triad nucleotide-binding protein 1adenosine 5'-monophosphoramidaseprotein kinase C inhibitor 1protein kinase C-interacting protein 1 | |
| Modification date | 20180523 | 20180519 | |
| UniProtAcc | O43157 | P49773 | |
| Ensembl transtripts involved in fusion gene | ENST00000296440, ENST00000358459, ENST00000358536, ENST00000448774, ENST00000456774, ENST00000465117, | ENST00000304043, ENST00000506207, ENST00000508488, ENST00000506908, ENST00000513012, | |
| Fusion gene scores | * DoF score | 7 X 8 X 5=280 | 2 X 4 X 2=16 |
| # samples | 7 | 4 | |
| ** MAII score | log2(7/280*10)=-2 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(4/16*10)=1.32192809488736 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
| Context | PubMed: PLXNB1 [Title/Abstract] AND HINT1 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | PLXNB1 | GO:0007162 | negative regulation of cell adhesion | 15218527 |
| Hgene | PLXNB1 | GO:0008360 | regulation of cell shape | 19843518 |
| Hgene | PLXNB1 | GO:0051493 | regulation of cytoskeleton organization | 19843518 |
| Hgene | PLXNB1 | GO:0071526 | semaphorin-plexin signaling pathway | 15218527|19843518 |
| Tgene | HINT1 | GO:0009154 | purine ribonucleotide catabolic process | 16835243 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | LD | BLCA | TCGA-E7-A5KE-01A | PLXNB1 | chr3 | 48450979 | - | HINT1 | chr5 | 130507426 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5CDS-intron | ENST00000296440 | ENST00000304043 | PLXNB1 | chr3 | 48450979 | - | HINT1 | chr5 | 130507426 | - |
| 5CDS-intron | ENST00000296440 | ENST00000506207 | PLXNB1 | chr3 | 48450979 | - | HINT1 | chr5 | 130507426 | - |
| 5CDS-intron | ENST00000296440 | ENST00000508488 | PLXNB1 | chr3 | 48450979 | - | HINT1 | chr5 | 130507426 | - |
| 5CDS-intron | ENST00000296440 | ENST00000506908 | PLXNB1 | chr3 | 48450979 | - | HINT1 | chr5 | 130507426 | - |
| 5CDS-intron | ENST00000296440 | ENST00000513012 | PLXNB1 | chr3 | 48450979 | - | HINT1 | chr5 | 130507426 | - |
| 5CDS-intron | ENST00000358459 | ENST00000304043 | PLXNB1 | chr3 | 48450979 | - | HINT1 | chr5 | 130507426 | - |
| 5CDS-intron | ENST00000358459 | ENST00000506207 | PLXNB1 | chr3 | 48450979 | - | HINT1 | chr5 | 130507426 | - |
| 5CDS-intron | ENST00000358459 | ENST00000508488 | PLXNB1 | chr3 | 48450979 | - | HINT1 | chr5 | 130507426 | - |
| 5CDS-intron | ENST00000358459 | ENST00000506908 | PLXNB1 | chr3 | 48450979 | - | HINT1 | chr5 | 130507426 | - |
| 5CDS-intron | ENST00000358459 | ENST00000513012 | PLXNB1 | chr3 | 48450979 | - | HINT1 | chr5 | 130507426 | - |
| 5CDS-intron | ENST00000358536 | ENST00000304043 | PLXNB1 | chr3 | 48450979 | - | HINT1 | chr5 | 130507426 | - |
| 5CDS-intron | ENST00000358536 | ENST00000506207 | PLXNB1 | chr3 | 48450979 | - | HINT1 | chr5 | 130507426 | - |
| 5CDS-intron | ENST00000358536 | ENST00000508488 | PLXNB1 | chr3 | 48450979 | - | HINT1 | chr5 | 130507426 | - |
| 5CDS-intron | ENST00000358536 | ENST00000506908 | PLXNB1 | chr3 | 48450979 | - | HINT1 | chr5 | 130507426 | - |
| 5CDS-intron | ENST00000358536 | ENST00000513012 | PLXNB1 | chr3 | 48450979 | - | HINT1 | chr5 | 130507426 | - |
| 5CDS-intron | ENST00000448774 | ENST00000304043 | PLXNB1 | chr3 | 48450979 | - | HINT1 | chr5 | 130507426 | - |
| 5CDS-intron | ENST00000448774 | ENST00000506207 | PLXNB1 | chr3 | 48450979 | - | HINT1 | chr5 | 130507426 | - |
| 5CDS-intron | ENST00000448774 | ENST00000508488 | PLXNB1 | chr3 | 48450979 | - | HINT1 | chr5 | 130507426 | - |
| 5CDS-intron | ENST00000448774 | ENST00000506908 | PLXNB1 | chr3 | 48450979 | - | HINT1 | chr5 | 130507426 | - |
| 5CDS-intron | ENST00000448774 | ENST00000513012 | PLXNB1 | chr3 | 48450979 | - | HINT1 | chr5 | 130507426 | - |
| 5CDS-intron | ENST00000456774 | ENST00000304043 | PLXNB1 | chr3 | 48450979 | - | HINT1 | chr5 | 130507426 | - |
| 5CDS-intron | ENST00000456774 | ENST00000506207 | PLXNB1 | chr3 | 48450979 | - | HINT1 | chr5 | 130507426 | - |
| 5CDS-intron | ENST00000456774 | ENST00000508488 | PLXNB1 | chr3 | 48450979 | - | HINT1 | chr5 | 130507426 | - |
| 5CDS-intron | ENST00000456774 | ENST00000506908 | PLXNB1 | chr3 | 48450979 | - | HINT1 | chr5 | 130507426 | - |
| 5CDS-intron | ENST00000456774 | ENST00000513012 | PLXNB1 | chr3 | 48450979 | - | HINT1 | chr5 | 130507426 | - |
| intron-intron | ENST00000465117 | ENST00000304043 | PLXNB1 | chr3 | 48450979 | - | HINT1 | chr5 | 130507426 | - |
| intron-intron | ENST00000465117 | ENST00000506207 | PLXNB1 | chr3 | 48450979 | - | HINT1 | chr5 | 130507426 | - |
| intron-intron | ENST00000465117 | ENST00000508488 | PLXNB1 | chr3 | 48450979 | - | HINT1 | chr5 | 130507426 | - |
| intron-intron | ENST00000465117 | ENST00000506908 | PLXNB1 | chr3 | 48450979 | - | HINT1 | chr5 | 130507426 | - |
| intron-intron | ENST00000465117 | ENST00000513012 | PLXNB1 | chr3 | 48450979 | - | HINT1 | chr5 | 130507426 | - |
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FusionProtFeatures for PLXNB1_HINT1 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| PLXNB1 | HINT1 |
| Receptor for SEMA4D. Plays a role in RHOA activation andsubsequent changes of the actin cytoskeleton. Plays a role in axonguidance, invasive growth and cell migration.{ECO:0000269|PubMed:12196628, ECO:0000269|PubMed:12198496,ECO:0000269|PubMed:15210733, ECO:0000269|PubMed:19843518,ECO:0000269|PubMed:20877282, ECO:0000269|PubMed:21912513}. | Hydrolyzes purine nucleotide phosphoramidates with asingle phosphate group, including adenosine 5'monophosphoramidate(AMP-NH2), adenosine 5'monophosphomorpholidate (AMP-morpholidate)and guanosine 5'monophosphomorpholidate (GMP-morpholidate).Hydrolyzes lysyl-AMP (AMP-N-epsilon-(N-alpha-acetyl lysine methylester)) generated by lysine tRNA ligase, as well as Met-AMP, His-AMP and Asp-AMP, lysyl-GMP (GMP-N-epsilon-(N-alpha-acetyl lysinemethyl ester)) and AMP-N-alanine methyl ester. Can also convertadenosine 5'-O-phosphorothioate and guanosine 5'-O-phosphorothioate to the corresponding nucleoside 5'-O-phosphateswith concomitant release of hydrogen sulfide. In addition,functions as scaffolding protein that modulates transcriptionalactivation by the LEF1/TCF1-CTNNB1 complex and by the complexformed with MITF and CTNNB1. Modulates p53/TP53 levels andp53/TP53-mediated apoptosis. Modulates proteasomal degradation oftarget proteins by the SCF (SKP2-CUL1-F-box protein) E3 ubiquitin-protein ligase complex. {ECO:0000269|PubMed:15703176,ECO:0000269|PubMed:16014379, ECO:0000269|PubMed:16835243,ECO:0000269|PubMed:19112177, ECO:0000269|PubMed:22329685,ECO:0000269|PubMed:22647378, ECO:0000269|PubMed:9323207}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for PLXNB1_HINT1 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for PLXNB1_HINT1 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| PLXNB1 | ARHGEF11, RND1, RND2, RND3, ARHGEF12, SEMA4D, RHOA, AKT1, GRB2, PLCG1, PLCG2, SOX4, DIAPH1, HNRNPD, SGTB, C21orf59, CENPO, CENPU, SMPX, HBB, HBA2 | HINT1 | KAT5, HINT1, MITF, CTNNB1, HDAC9, SIN3A, CDC34, RBX1, SP1, DHX36, RUVBL1, RUVBL2, LEF1, CDC16, HDAC7, ACTL6A, CDK9, UNK, AKR1B1, AKR1B10, AKR1B15, DUT, ENO1, ENO2, ENO3, FABP3, FABP5, FABP7, FKBP1A, FKBP1B, FKBP2, GPX4, GSTO2, GSTT1, ARHGDIA, FKBP7, HSPA4L, MTAP, NUTF2, OXCT1, PFDN2, PIN1, PTGR1, RAE1, RGN, SPR, TKT, TXN, UCHL3, HSPE1, MIF, NME1-NME2, NME2, PARK7, PMP2, PPIB, PRDX2, PRDX5, PRDX6, STIP1, TAGLN, TAGLN2, TAGLN3, UBE2V1, TMEM189-UBE2V1, UFC1, EWSR1, OFD1, SCLT1, STIL, BTRC, U2AF2, SNX24, SNRNP27, GNL1, SOD1, TRIM25 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for PLXNB1_HINT1 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PLXNB1_HINT1 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Tgene | HINT1 | C0036341 | Schizophrenia | 2 | CTD_human |
| Tgene | HINT1 | C0005586 | Bipolar Disorder | 1 | PSYGENET |
| Tgene | HINT1 | C0026848 | Myopathy | 1 | CTD_human |
| Tgene | HINT1 | C0242287 | Isaacs syndrome | 1 | ORPHANET;UNIPROT |
| Tgene | HINT1 | C1861063 | TOBACCO ADDICTION, SUSCEPTIBILITY TO (finding) | 1 | CTD_human |
| Tgene | HINT1 | C2932678 | Inherited Peripheral Neuropathy | 1 | CTD_human |
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