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Fusion gene ID: 27458 |
FusionGeneSummary for PLAGL1_MYRFL |
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Fusion gene information | Fusion gene name: PLAGL1_MYRFL | Fusion gene ID: 27458 | Hgene | Tgene | Gene symbol | PLAGL1 | MYRFL | Gene ID | 5325 | 196446 |
Gene name | PLAG1 like zinc finger 1 | myelin regulatory factor like | |
Synonyms | LOT1|ZAC|ZAC1 | C12orf15|C12orf28|bcm1377 | |
Cytomap | 6q24.2 | 12q15 | |
Type of gene | protein-coding | protein-coding | |
Description | zinc finger protein PLAGL1PLAG-like 1lost on transformation 1pleiomorphic adenoma gene-like 1tumor suppressor ZAC | myelin regulatory factor-like protein | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | Q9UM63 | Q96LU7 | |
Ensembl transtripts involved in fusion gene | ENST00000429150, ENST00000416623, ENST00000392309, ENST00000392307, ENST00000437412, ENST00000444202, ENST00000493898, ENST00000360537, ENST00000354765, ENST00000367572, ENST00000367571, | ENST00000552032, ENST00000547771, ENST00000299350, ENST00000535034, | |
Fusion gene scores | * DoF score | 4 X 4 X 3=48 | 24 X 10 X 4=960 |
# samples | 3 | 21 | |
** MAII score | log2(3/48*10)=-0.678071905112638 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(21/960*10)=-2.1926450779424 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: PLAGL1 [Title/Abstract] AND MYRFL [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | PLAGL1 | GO:0045944 | positive regulation of transcription by RNA polymerase II | 9671765|15888726 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | SARC | TCGA-DX-A6BH-01A | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5UTR-3CDS | ENST00000429150 | ENST00000552032 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-3CDS | ENST00000429150 | ENST00000547771 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-3CDS | ENST00000429150 | ENST00000299350 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-intron | ENST00000429150 | ENST00000535034 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-3CDS | ENST00000416623 | ENST00000552032 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-3CDS | ENST00000416623 | ENST00000547771 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-3CDS | ENST00000416623 | ENST00000299350 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-intron | ENST00000416623 | ENST00000535034 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-3CDS | ENST00000392309 | ENST00000552032 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-3CDS | ENST00000392309 | ENST00000547771 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-3CDS | ENST00000392309 | ENST00000299350 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-intron | ENST00000392309 | ENST00000535034 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-3CDS | ENST00000392307 | ENST00000552032 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-3CDS | ENST00000392307 | ENST00000547771 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-3CDS | ENST00000392307 | ENST00000299350 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-intron | ENST00000392307 | ENST00000535034 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-3CDS | ENST00000437412 | ENST00000552032 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-3CDS | ENST00000437412 | ENST00000547771 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-3CDS | ENST00000437412 | ENST00000299350 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-intron | ENST00000437412 | ENST00000535034 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-3CDS | ENST00000444202 | ENST00000552032 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-3CDS | ENST00000444202 | ENST00000547771 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-3CDS | ENST00000444202 | ENST00000299350 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-intron | ENST00000444202 | ENST00000535034 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
intron-3CDS | ENST00000493898 | ENST00000552032 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
intron-3CDS | ENST00000493898 | ENST00000547771 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
intron-3CDS | ENST00000493898 | ENST00000299350 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
intron-intron | ENST00000493898 | ENST00000535034 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-3CDS | ENST00000360537 | ENST00000552032 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-3CDS | ENST00000360537 | ENST00000547771 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-3CDS | ENST00000360537 | ENST00000299350 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-intron | ENST00000360537 | ENST00000535034 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-3CDS | ENST00000354765 | ENST00000552032 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-3CDS | ENST00000354765 | ENST00000547771 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-3CDS | ENST00000354765 | ENST00000299350 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-intron | ENST00000354765 | ENST00000535034 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-3CDS | ENST00000367572 | ENST00000552032 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-3CDS | ENST00000367572 | ENST00000547771 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-3CDS | ENST00000367572 | ENST00000299350 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-intron | ENST00000367572 | ENST00000535034 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-3CDS | ENST00000367571 | ENST00000552032 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-3CDS | ENST00000367571 | ENST00000547771 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-3CDS | ENST00000367571 | ENST00000299350 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
5UTR-intron | ENST00000367571 | ENST00000535034 | PLAGL1 | chr6 | 144281610 | - | MYRFL | chr12 | 70349143 | + |
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FusionProtFeatures for PLAGL1_MYRFL |
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Hgene | Tgene |
PLAGL1 | MYRFL |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for PLAGL1_MYRFL |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for PLAGL1_MYRFL |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
PLAGL1 | TP53, DAXX, PML, EP300, CREBBP, HDAC1, UBE2I, PIAS2, SMAD3, TP73, KAT2B, TRIM25 | MYRFL |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for PLAGL1_MYRFL |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PLAGL1_MYRFL |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | PLAGL1 | C0038356 | Stomach Neoplasms | 1 | CTD_human |