FusionGDB Logo

Home

Download

Statistics

Examples

Help

Contact

Center for Computational Systems Medicine
leaf

FusionGeneSummary

leaf

FusionProtFeature

leaf

FusionGeneSequence

leaf

FusionGenePPI

leaf

RelatedDrugs

leaf

RelatedDiseases

Fusion gene ID: 27431

FusionGeneSummary for PLA2G16_SGPP2

check button Fusion gene summary
Fusion gene informationFusion gene name: PLA2G16_SGPP2
Fusion gene ID: 27431
HgeneTgene
Gene symbol

PLA2G16

SGPP2

Gene ID

11145

130367

Gene namephospholipase A2 group XVIsphingosine-1-phosphate phosphatase 2
SynonymsAdPLA|H-REV107|H-REV107-1|HRASLS3|HREV107|HREV107-1|HREV107-3|HRSL3SPP2|SPPase2
Cytomap

11q12.3-q13.1

2q36.1

Type of geneprotein-codingprotein-coding
DescriptionHRAS-like suppressor 3Ca-independent phospholipase A1/2H-rev 107 protein homologHRAS-like suppressor 1adipose-specific PLA2adipose-specific phospholipase A2group XVI phospholipase A1/A2group XVI phospholipase A2renal carcinoma antigen NY-REN-65sphingosine-1-phosphate phosphatase 2sphingosine 1-phosphate phosphohydrolase 2sphingosine-1-phosphatase 2sphingosine-1-phosphate phosphotase 2
Modification date2018051920180329
UniProtAcc

P53816

Q8IWX5

Ensembl transtripts involved in fusion geneENST00000323646, ENST00000415826, 
ENST00000394613, 
ENST00000321276, 
Fusion gene scores* DoF score3 X 3 X 3=274 X 2 X 4=32
# samples 35
** MAII scorelog2(3/27*10)=0.15200309344505
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
log2(5/32*10)=0.643856189774725
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
Context

PubMed: PLA2G16 [Title/Abstract] AND SGPP2 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotationTumor suppressor gene involved fusion gene, in-frame but not retained their domain.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgenePLA2G16

GO:0006644

phospholipid metabolic process

20100577

TgeneSGPP2

GO:0006670

sphingosine metabolic process

12411432


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVLGGTCGA-TM-A84B-01APLA2G16chr11

63357572

-SGPP2chr2

223339287

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000323646ENST00000321276PLA2G16chr11

63357572

-SGPP2chr2

223339287

+
Frame-shiftENST00000415826ENST00000321276PLA2G16chr11

63357572

-SGPP2chr2

223339287

+
5UTR-3CDSENST00000394613ENST00000321276PLA2G16chr11

63357572

-SGPP2chr2

223339287

+

Top

FusionProtFeatures for PLA2G16_SGPP2


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
PLA2G16

P53816

SGPP2

Q8IWX5

Lipid-modifying enzyme that acts as major regulator ofadipocyte lipolysis by catalyzing the release of fatty acids fromphospholipids in adipose tissue (PubMed:19615464, PubMed:19047760,PubMed:20837014, PubMed:22605381, PubMed:22923616). Showsphospholipase A1 and A2 activity, catalyzing the calcium-independent hydrolysis of acyl groups in variousphosphatidylcholines (PC) and phosphatidylethanolamine (PE)(PubMed:19615464, PubMed:19047760, PubMed:20837014,PubMed:22605381, PubMed:22923616). For most substrates,phospholipase A1 activity is much higher than phospholipase A2activity (PubMed:19047760). Phospholipase activity causesdecreased intracellular levels of ether-type lipids, affectingperoxisome metabolism (By similarity). May also haveacyltransferase activity: catalyzes both N-acylation ofphosphatidylethanolamine to form N-acyl-phosphatidylethanolamineand O-acylation of lyso-phosphatidylcholines to formphosphatidylcholines (PubMed:22605381, PubMed:25383759). Therelevance of acyltransferase activity in vivo is however unclearand would require additional evidences (PubMed:22605381,PubMed:25383759). Also has weak lysophospholipase activity (Bysimilarity). {ECO:0000250|UniProtKB:Q8R3U1,ECO:0000269|PubMed:17374643, ECO:0000269|PubMed:19047760,ECO:0000269|PubMed:19615464, ECO:0000269|PubMed:20837014,ECO:0000269|PubMed:22605381, ECO:0000269|PubMed:22923616,ECO:0000269|PubMed:25383759}. (Microbial infection) Acts as a host factor forpicornaviruses: required during early infection to promote viralgenome release into the cytoplasm (PubMed:28077878). May act as acellular sensor of membrane damage at sites of virus entry, whichrelocalizes to sites of membrane rupture upon virus unfection(PubMed:28077878). Facilitates safe passage of the RNA away fromLGALS8, enabling viral genome translation by host ribosome(PubMed:28077878). May also be involved in initiating poreformation, increasing pore size or in maintaining pores for genomedelivery (PubMed:28077878). The lipid-modifying enzyme activity isrequired for this process (PubMed:28077878).{ECO:0000269|PubMed:28077878}. Has specific phosphohydrolase activity towards sphingoidbase 1-phosphates. Has high phosphohydrolase activity againstdihydrosphingosine-1-phosphate and sphingosine-1-phosphate (S1P)in vitro. May play a role in attenuating intracellular sphingosine1-phosphate (S1P) signaling. May play a role in pro-inflammatorysignaling. {ECO:0000269|PubMed:12411432,ECO:0000269|PubMed:17113265}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
>>>>>>>>>>>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgenePLA2G16chr11:63357572chr2:223339287ENST00000323646-341_132129163Topological domainCytoplasmic
HgenePLA2G16chr11:63357572chr2:223339287ENST00000415826-451_132129163Topological domainCytoplasmic
TgeneSGPP2chr11:63357572chr2:223339287ENST00000321276+05136_14473400RegionPhosphatase sequence motif I
TgeneSGPP2chr11:63357572chr2:223339287ENST00000321276+05163_16673400RegionPhosphatase sequence motif II
TgeneSGPP2chr11:63357572chr2:223339287ENST00000321276+05206_21773400RegionPhosphatase sequence motif III
TgeneSGPP2chr11:63357572chr2:223339287ENST00000321276+05121_14173400TransmembraneHelical
TgeneSGPP2chr11:63357572chr2:223339287ENST00000321276+05160_18073400TransmembraneHelical
TgeneSGPP2chr11:63357572chr2:223339287ENST00000321276+05185_20573400TransmembraneHelical
TgeneSGPP2chr11:63357572chr2:223339287ENST00000321276+05219_23973400TransmembraneHelical
TgeneSGPP2chr11:63357572chr2:223339287ENST00000321276+05247_26773400TransmembraneHelical
TgeneSGPP2chr11:63357572chr2:223339287ENST00000321276+05280_30073400TransmembraneHelical
TgeneSGPP2chr11:63357572chr2:223339287ENST00000321276+05318_33873400TransmembraneHelical
TgeneSGPP2chr11:63357572chr2:223339287ENST00000321276+05371_39173400TransmembraneHelical
TgeneSGPP2chr11:63357572chr2:223339287ENST00000321276+0588_10873400TransmembraneHelical

- In-frame and not-retained protein feature among the 13 regional features.
>>>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgenePLA2G16chr11:63357572chr2:223339287ENST00000323646-34156_162129163Topological domainLumenal
HgenePLA2G16chr11:63357572chr2:223339287ENST00000415826-45156_162129163Topological domainLumenal
HgenePLA2G16chr11:63357572chr2:223339287ENST00000323646-34133_155129163TransmembraneHelical
HgenePLA2G16chr11:63357572chr2:223339287ENST00000415826-45133_155129163TransmembraneHelical


Top

FusionGeneSequence for PLA2G16_SGPP2


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.
>In-frame_PLA2G16_ENST00000323646_chr11_63357572_-_SGPP2_ENST00000321276_chr2_223339287_+_456aa
MRAPIPEPKPGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEVAGAGAASVMSALTDKAIVKKELLYDVAGSDKYQVNNKHDDKYSPLPCS
KIIQRAEELVGQEVLYKLTSENCEHFVNELRYGVARSDQAYVQKYVVKNYFYYYLFQFSAALGQEVFYITFLPFTHWNIDPYLSRRLIII
WVLVMYIGQVAKDVLKWPRPSSPPVVKLEKRLIAEYGMPSTHAMAATAIAFTLLISTMDRYQYPFVLGLVMAVVFSTLVCLSRLYTGMHT
VLDVLGGVLITALLIVLTYPAWTFIDCLDSASPLFPVCVIVVPFFLCYNYPVSDYYSPTRADTTTILAAGAGVTIGFWINHFFQLVSKPA
ESLPVIQNIPPLTTYMLVLGLTKFAVGIVLILLVRQLVQNLSLQVLYSWFKVVTRNKEARRRLEIEVPYKFVTYTSVGICATTFVPMLHR


* Fusion transcript sequences (only coding sequence (CDS) region).
>In-frame_PLA2G16_ENST00000323646_chr11_63357572_-_SGPP2_ENST00000321276_chr2_223339287_+_1368nt
ATGCGTGCGCCCATTCCAGAGCCTAAGCCTGGAGACCTGATTGAGATTTTTCGCCCTTTCTACAGACACTGGGCCATCTATGTTGGCGAT
GGATATGTGGTTCATCTGGCCCCTCCAAGTGAGGTCGCAGGAGCTGGTGCAGCCAGTGTCATGTCCGCCCTGACTGACAAGGCCATCGTG
AAGAAGGAATTGCTGTATGATGTGGCCGGGAGTGACAAGTACCAGGTCAACAACAAACATGATGACAAGTACTCGCCGCTGCCCTGCAGC
AAAATCATCCAGCGGGCGGAGGAGCTGGTGGGGCAGGAGGTGCTCTACAAGCTGACCAGTGAGAACTGCGAGCACTTTGTGAATGAGCTG
CGCTATGGAGTCGCCCGCAGTGACCAGGCTTATGTACAGAAGTACGTCGTGAAGAATTATTTCTACTATTACCTATTCCAATTTTCAGCT
GCTTTGGGCCAAGAAGTGTTCTACATCACGTTTCTTCCATTCACTCACTGGAATATTGACCCTTATTTATCCAGAAGATTGATCATCATA
TGGGTTTTGGTGATGTATATTGGCCAAGTGGCCAAGGATGTCTTGAAGTGGCCCCGTCCCTCCTCCCCTCCAGTTGTAAAACTGGAAAAG
AGACTGATCGCTGAATATGGAATGCCATCCACCCACGCCATGGCGGCCACTGCCATTGCCTTCACCCTCCTTATCTCTACTATGGACAGA
TACCAGTATCCATTTGTGTTGGGACTGGTGATGGCCGTGGTGTTTTCCACCTTGGTGTGTCTCAGCAGGCTCTACACTGGGATGCATACG
GTCCTGGATGTGCTGGGTGGCGTCCTGATCACCGCACTCCTCATCGTCCTCACCTACCCTGCCTGGACCTTCATCGACTGCCTGGACTCG
GCCAGCCCCCTCTTCCCCGTGTGTGTCATAGTTGTGCCATTCTTCCTGTGTTACAATTACCCTGTTTCTGATTACTACAGCCCAACCCGG
GCGGACACCACCACCATTCTGGCTGCCGGGGCTGGAGTGACCATAGGATTCTGGATCAACCATTTCTTCCAGCTTGTATCCAAGCCCGCT
GAATCTCTCCCTGTTATTCAGAACATCCCACCACTCACCACCTACATGTTAGTTTTGGGTCTGACCAAATTTGCAGTGGGAATTGTGTTG
ATCCTCTTGGTTCGTCAGCTTGTACAAAATCTCTCACTGCAAGTATTATACTCATGGTTCAAGGTGGTCACCAGGAACAAGGAGGCCAGG
CGGAGACTGGAGATTGAAGTGCCTTACAAGTTTGTTACCTACACATCTGTTGGCATCTGCGCTACAACCTTTGTGCCGATGCTTCACAGG


* Fusion transcript sequences (Full-length transcript).
>In-frame_PLA2G16_ENST00000323646_chr11_63357572_-_SGPP2_ENST00000321276_chr2_223339287_+_3773nt
CTTCCTGGAAGGGTGCGATAAGGCCGGGCGAGGTGCCTGGGATGCTTCTCCCCTTCCGCGAGGAAGAGATCTAATTGGGTAGGGCGGGTG
TAGACTAGCCTGCCGAGCCGCCCGCTGGCACCTGCAGCCTCCTGGGCGCCCGCCGGGCCCCGGCGAGAAAGTTGTTAAAGGGAGCGAGGT
GGTTGTTCCTGGGGTCCGAGGCGCGCCTCTCACGCCCTGCCCAACAGAAGCCGCAGTCCCGTGGGGTCTGGAGACGCAGTTTCCTGTTAA
TGACAATAAATCCCTGCTCCCCCTGCCTCAGACATCTACGCAGCGAAATCGAGCCTGGCCTTGAGGGTCCACACCGCGAGGGAAGATGCG
TGCGCCCATTCCAGAGCCTAAGCCTGGAGACCTGATTGAGATTTTTCGCCCTTTCTACAGACACTGGGCCATCTATGTTGGCGATGGATA
TGTGGTTCATCTGGCCCCTCCAAGTGAGGTCGCAGGAGCTGGTGCAGCCAGTGTCATGTCCGCCCTGACTGACAAGGCCATCGTGAAGAA
GGAATTGCTGTATGATGTGGCCGGGAGTGACAAGTACCAGGTCAACAACAAACATGATGACAAGTACTCGCCGCTGCCCTGCAGCAAAAT
CATCCAGCGGGCGGAGGAGCTGGTGGGGCAGGAGGTGCTCTACAAGCTGACCAGTGAGAACTGCGAGCACTTTGTGAATGAGCTGCGCTA
TGGAGTCGCCCGCAGTGACCAGGCTTATGTACAGAAGTACGTCGTGAAGAATTATTTCTACTATTACCTATTCCAATTTTCAGCTGCTTT
GGGCCAAGAAGTGTTCTACATCACGTTTCTTCCATTCACTCACTGGAATATTGACCCTTATTTATCCAGAAGATTGATCATCATATGGGT
TTTGGTGATGTATATTGGCCAAGTGGCCAAGGATGTCTTGAAGTGGCCCCGTCCCTCCTCCCCTCCAGTTGTAAAACTGGAAAAGAGACT
GATCGCTGAATATGGAATGCCATCCACCCACGCCATGGCGGCCACTGCCATTGCCTTCACCCTCCTTATCTCTACTATGGACAGATACCA
GTATCCATTTGTGTTGGGACTGGTGATGGCCGTGGTGTTTTCCACCTTGGTGTGTCTCAGCAGGCTCTACACTGGGATGCATACGGTCCT
GGATGTGCTGGGTGGCGTCCTGATCACCGCACTCCTCATCGTCCTCACCTACCCTGCCTGGACCTTCATCGACTGCCTGGACTCGGCCAG
CCCCCTCTTCCCCGTGTGTGTCATAGTTGTGCCATTCTTCCTGTGTTACAATTACCCTGTTTCTGATTACTACAGCCCAACCCGGGCGGA
CACCACCACCATTCTGGCTGCCGGGGCTGGAGTGACCATAGGATTCTGGATCAACCATTTCTTCCAGCTTGTATCCAAGCCCGCTGAATC
TCTCCCTGTTATTCAGAACATCCCACCACTCACCACCTACATGTTAGTTTTGGGTCTGACCAAATTTGCAGTGGGAATTGTGTTGATCCT
CTTGGTTCGTCAGCTTGTACAAAATCTCTCACTGCAAGTATTATACTCATGGTTCAAGGTGGTCACCAGGAACAAGGAGGCCAGGCGGAG
ACTGGAGATTGAAGTGCCTTACAAGTTTGTTACCTACACATCTGTTGGCATCTGCGCTACAACCTTTGTGCCGATGCTTCACAGGTTTCT
GGGATTACCCTGAGTCTCAAACAGTTGGAAACTAGCCCACTGGACATGAAAGCCAAGACATAGGAAAGTTATTGGTAGGCAAATCTTGAC
AACTTATTTTTCTTTAACAACAACAAAAAGTCATACGGCTGTCTTGCTACTACCAGATAAATGATGCTGCTGTGTGAAAGGAAGAACTGT
CTCATAGCGGTCATTGGTCGTCCGTGGTGGTTGGTTGTGCTACAGTTGAACCCAGGCTAAAGACCATAATCCGGATCTTTAAAGGCACAC
ACCGCGCCCCCCCCCCCCCCGCCCGGCCCCTGCTCCTCTCGCTGTTGCACGGGCTTTGGATCTAGTCATGGGCTGGCAGGAATTGTGGCC
TGGCTTAGGAATAGCTATGAGCCCCACTGGGTTCTGGAGAGCCAGTAGAGATGGGGTGATCTGGGAGGCTGGAGGTAGAGCCTTTCTTTT
CCGTTACAACCTTGCCTAGCATGGAGTTATTTCTAAAATGGGAACTTTGGTCTAGGAGAAGGGGTGGCACCATATGAAACGGCATTCCTT
GGACAGGGTGACTTCCTTATCGTTTATTTGGTGATTTTTTGTTTTGTTTTGTTTGAGACAGGATCTTGCTCTGTTTCCCAGGCTGTATTA
CAGTGGCACAATCTCAGCTCACTGCAAACTCTGCCTCCCGGGCTCAAGCAATCCTCCTGCCTGAGCCAACTGAGTAGCTGGGACTGTAAG
CATAGACCACCATGTGCCCAGCTAATTTTTGTAGAGACAGGGTTTCTCCATGTTGCCCAGGTACGTCTGAAACTCCTGGGCTTAAGTGAT
CCACCCACCTCAGCCTCCCAAAGTGCTGGGATTATAGGCATGAGCCACTGTGCCCGGCCTCCTCCTTGTTATGATCAAATTAGACTGTGC
CTGGTTGGGTGGTAAGATCACTCTGAAAGAAAGCTCACTGTGAAGAGATGAAAGGTGGAGGCAGAGCTGTGAGGTCATGGGGAAAAGCCT
GCTTTCCTTATAAGTCCTGCTGTTCATGTTGGAATAAGGATCTGCTCTTCCTTGTTTCCATGCATTTTGCAGGATTCCAGGTACCATTAC
CACACTCTTCTGACCCATGAAACCAACTGGCTGCTCACACATCACCAAACAGGTTGGGGGTTAGCCTTCAGCACAGGTGGATACATCTGG
GATTCACTGAGATTCCTGCCCTCTCCTGCTTCCTAGTGGTTTGGGACAGGCCCTCTGCCCATCGTCAGCAGTTTTTTGCTTTCATACAAA
CCTGGAAGGCACTGGCATCTGCCTAGGAAAGTGGATCTGTGAAGAACAGATGAACTCAATCCTTTCTGGAGTCTGACAAAGAAGGGATAG
GCTTCCTTGACATTGCCTGTCCTGACAAGGCCTCCCTGACATTACTCCTCCAATTTCACAGTTACCTTCTGTAAATCTATTTTCTCATCT
ACTGAATAGAATCAGGCGCCCTTTTTGTCTTCCCACCTCTTATCTCTTGGCAATTTTAAGGGGAATTAATGCAAGAACAACTTTAGTGTC
TCTTGGGAAAACAAGCCAACCAAATACAAAACCCATTAAGCCTACTAGGGTGAGTCCTCTTAACATGGGAAGGCGATGATTATGCAAACA
CCGGAGTTCCCTCCTCTTCAGTTCCTAAGAATAAAGAACAGGTATCAAGAACTTTCTTTAAAGTTAGTGTAACTATAGTTAACAAAGTAT
CCATTGAAGTTTAGTGCCTGTAGGACTGAGCCAGTGCTTTATCAACCCAACACATCATCACCATGTGCATACTCTAGAAAAAAAAATAGC
TTCCTTAAAAGTTACAGAGGCTCTTAACGTGTTAAAACCGAAAAATCACATTTTTCTTGATTTCAAATATGTTCTACGGCCTTACTGTTG
GGATGATATTTAGTATGTAACTTAGCATTCCAATTTCTCAAGAATTTTTAGGCCGGGTGCGGTGGCTCATGCCTGTAATCCCAGCACTTT


Top

FusionGenePPI for PLA2G16_SGPP2


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
PLA2G16UBQLN1, UBQLN4, PPP2R1A, HRASSGPP2


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


Top

RelatedDrugs for PLA2G16_SGPP2


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

RelatedDiseases for PLA2G16_SGPP2


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource