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Fusion gene ID: 27010 |
FusionGeneSummary for PHLDB2_RBM47 |
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Fusion gene information | Fusion gene name: PHLDB2_RBM47 | Fusion gene ID: 27010 | Hgene | Tgene | Gene symbol | PHLDB2 | RBM47 | Gene ID | 90102 | 54502 |
Gene name | pleckstrin homology like domain family B member 2 | RNA binding motif protein 47 | |
Synonyms | LL5b|LL5beta | NET18 | |
Cytomap | 3q13.2 | 4p14 | |
Type of gene | protein-coding | protein-coding | |
Description | pleckstrin homology-like domain family B member 2LL5 betaprotein LL5-beta | RNA-binding protein 47 | |
Modification date | 20180522 | 20180519 | |
UniProtAcc | Q86SQ0 | A0AV96 | |
Ensembl transtripts involved in fusion gene | ENST00000393923, ENST00000412622, ENST00000431670, ENST00000393925, ENST00000481953, ENST00000495180, ENST00000478922, ENST00000477695, ENST00000470699, | ENST00000319592, ENST00000381793, ENST00000381795, ENST00000295971, ENST00000514014, ENST00000515809, | |
Fusion gene scores | * DoF score | 8 X 7 X 6=336 | 6 X 7 X 3=126 |
# samples | 9 | 7 | |
** MAII score | log2(9/336*10)=-1.90046432644909 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(7/126*10)=-0.84799690655495 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: PHLDB2 [Title/Abstract] AND RBM47 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | BE004180 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-intron | ENST00000393923 | ENST00000319592 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000393923 | ENST00000381793 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000393923 | ENST00000381795 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000393923 | ENST00000295971 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000393923 | ENST00000514014 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000393923 | ENST00000515809 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000412622 | ENST00000319592 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000412622 | ENST00000381793 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000412622 | ENST00000381795 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000412622 | ENST00000295971 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000412622 | ENST00000514014 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000412622 | ENST00000515809 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000431670 | ENST00000319592 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000431670 | ENST00000381793 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000431670 | ENST00000381795 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000431670 | ENST00000295971 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000431670 | ENST00000514014 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000431670 | ENST00000515809 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000393925 | ENST00000319592 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000393925 | ENST00000381793 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000393925 | ENST00000381795 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000393925 | ENST00000295971 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000393925 | ENST00000514014 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000393925 | ENST00000515809 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000481953 | ENST00000319592 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000481953 | ENST00000381793 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000481953 | ENST00000381795 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000481953 | ENST00000295971 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000481953 | ENST00000514014 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000481953 | ENST00000515809 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000495180 | ENST00000319592 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000495180 | ENST00000381793 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000495180 | ENST00000381795 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000495180 | ENST00000295971 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000495180 | ENST00000514014 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000495180 | ENST00000515809 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000478922 | ENST00000319592 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000478922 | ENST00000381793 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000478922 | ENST00000381795 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000478922 | ENST00000295971 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000478922 | ENST00000514014 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000478922 | ENST00000515809 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000477695 | ENST00000319592 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000477695 | ENST00000381793 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000477695 | ENST00000381795 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000477695 | ENST00000295971 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000477695 | ENST00000514014 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000477695 | ENST00000515809 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000470699 | ENST00000319592 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000470699 | ENST00000381793 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000470699 | ENST00000381795 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000470699 | ENST00000295971 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000470699 | ENST00000514014 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
intron-intron | ENST00000470699 | ENST00000515809 | PHLDB2 | chr3 | 111680418 | - | RBM47 | chr4 | 40540279 | - |
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FusionProtFeatures for PHLDB2_RBM47 |
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Hgene | Tgene |
PHLDB2 | RBM47 |
Seems to be involved in the assembly of the postsynapticapparatus. May play a role in acetyl-choline receptor (AChR)aggregation in the postsynaptic membrane (By similarity).{ECO:0000250, ECO:0000269|PubMed:12376540}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for PHLDB2_RBM47 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for PHLDB2_RBM47 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for PHLDB2_RBM47 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PHLDB2_RBM47 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | RBM47 | C3495559 | Juvenile arthritis | 1 | CTD_human |