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Fusion gene ID: 26913 |
FusionGeneSummary for PHF17_LARP1B |
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Fusion gene information | Fusion gene name: PHF17_LARP1B | Fusion gene ID: 26913 | Hgene | Tgene | Gene symbol | PHF17 | LARP1B | Gene ID | 79960 | 55132 |
Gene name | jade family PHD finger 1 | La ribonucleoprotein domain family member 1B | |
Synonyms | PHF17 | LARP2 | |
Cytomap | 4q28.2 | 4q28.2 | |
Type of gene | protein-coding | protein-coding | |
Description | protein Jade-1PHD finger protein 17PHD protein Jade-1gene for apoptosis and differentiation in epitheliajade family PHD finger protein 1 | la-related protein 1BLa ribonucleoprotein domain family, member 2la-related protein 2 | |
Modification date | 20180519 | 20180519 | |
UniProtAcc | Q659C4 | ||
Ensembl transtripts involved in fusion gene | ENST00000226319, ENST00000511647, ENST00000452328, ENST00000512960, ENST00000413543, | ENST00000326639, ENST00000264584, ENST00000441387, ENST00000354456, ENST00000506199, ENST00000512292, ENST00000394288, ENST00000432347, ENST00000427266, | |
Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 3 X 4 X 2=24 |
# samples | 1 | 7 | |
** MAII score | log2(1/1*10)=3.32192809488736 | log2(7/24*10)=1.54432051622381 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: PHF17 [Title/Abstract] AND LARP1B [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | PHF17 | GO:0043966 | histone H3 acetylation | 16387653 |
Hgene | PHF17 | GO:0043981 | histone H4-K5 acetylation | 16387653 |
Hgene | PHF17 | GO:0043982 | histone H4-K8 acetylation | 16387653 |
Hgene | PHF17 | GO:0043983 | histone H4-K12 acetylation | 16387653 |
Hgene | PHF17 | GO:0043984 | histone H4-K16 acetylation | 16387653 |
Hgene | PHF17 | GO:0090090 | negative regulation of canonical Wnt signaling pathway | 22654112 |
Hgene | PHF17 | GO:2000134 | negative regulation of G1/S transition of mitotic cell cycle | 23001567 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | STAD | TCGA-KB-A6F7-01A | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000226319 | ENST00000326639 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
Frame-shift | ENST00000226319 | ENST00000264584 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
Frame-shift | ENST00000226319 | ENST00000441387 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
5CDS-5UTR | ENST00000226319 | ENST00000354456 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
5CDS-intron | ENST00000226319 | ENST00000506199 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
5CDS-intron | ENST00000226319 | ENST00000512292 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
5CDS-intron | ENST00000226319 | ENST00000394288 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
5CDS-intron | ENST00000226319 | ENST00000432347 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
5CDS-intron | ENST00000226319 | ENST00000427266 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
Frame-shift | ENST00000511647 | ENST00000326639 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
Frame-shift | ENST00000511647 | ENST00000264584 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
Frame-shift | ENST00000511647 | ENST00000441387 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
5CDS-5UTR | ENST00000511647 | ENST00000354456 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
5CDS-intron | ENST00000511647 | ENST00000506199 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
5CDS-intron | ENST00000511647 | ENST00000512292 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
5CDS-intron | ENST00000511647 | ENST00000394288 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
5CDS-intron | ENST00000511647 | ENST00000432347 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
5CDS-intron | ENST00000511647 | ENST00000427266 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
Frame-shift | ENST00000452328 | ENST00000326639 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
Frame-shift | ENST00000452328 | ENST00000264584 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
Frame-shift | ENST00000452328 | ENST00000441387 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
5CDS-5UTR | ENST00000452328 | ENST00000354456 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
5CDS-intron | ENST00000452328 | ENST00000506199 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
5CDS-intron | ENST00000452328 | ENST00000512292 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
5CDS-intron | ENST00000452328 | ENST00000394288 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
5CDS-intron | ENST00000452328 | ENST00000432347 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
5CDS-intron | ENST00000452328 | ENST00000427266 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
Frame-shift | ENST00000512960 | ENST00000326639 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
Frame-shift | ENST00000512960 | ENST00000264584 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
Frame-shift | ENST00000512960 | ENST00000441387 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
5CDS-5UTR | ENST00000512960 | ENST00000354456 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
5CDS-intron | ENST00000512960 | ENST00000506199 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
5CDS-intron | ENST00000512960 | ENST00000512292 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
5CDS-intron | ENST00000512960 | ENST00000394288 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
5CDS-intron | ENST00000512960 | ENST00000432347 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
5CDS-intron | ENST00000512960 | ENST00000427266 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
Frame-shift | ENST00000413543 | ENST00000326639 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
Frame-shift | ENST00000413543 | ENST00000264584 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
Frame-shift | ENST00000413543 | ENST00000441387 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
5CDS-5UTR | ENST00000413543 | ENST00000354456 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
5CDS-intron | ENST00000413543 | ENST00000506199 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
5CDS-intron | ENST00000413543 | ENST00000512292 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
5CDS-intron | ENST00000413543 | ENST00000394288 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
5CDS-intron | ENST00000413543 | ENST00000432347 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
5CDS-intron | ENST00000413543 | ENST00000427266 | PHF17 | chr4 | 129752965 | + | LARP1B | chr4 | 129083349 | + |
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FusionProtFeatures for PHF17_LARP1B |
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Hgene | Tgene |
PHF17 | LARP1B |
Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for PHF17_LARP1B |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for PHF17_LARP1B |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
PHF17 | LARP1B | ELAVL1, CUL3, APP, UBC, POLR2J, KIF2A, TRIM69, CCNI2, TRA2A, NIFK, RPS2, ZC3H3, HNRNPA1, LUC7L2, CCNG1, POC1A, GSPT2, LARP1, ELAVL2, CDX1, DGCR8, H2AFX, APOBEC3D, WDR46, HIST1H1E, SNRNP70 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for PHF17_LARP1B |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PHF17_LARP1B |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |