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Fusion gene ID: 26591 |
FusionGeneSummary for PDXK_ABCG1 |
Fusion gene summary |
Fusion gene information | Fusion gene name: PDXK_ABCG1 | Fusion gene ID: 26591 | Hgene | Tgene | Gene symbol | PDXK | ABCG1 | Gene ID | 8566 | 9619 |
Gene name | pyridoxal kinase | ATP binding cassette subfamily G member 1 | |
Synonyms | C21orf124|C21orf97|HEL-S-1a|PKH|PNK|PRED79 | ABC8|WHITE1 | |
Cytomap | 21q22.3 | 21q22.3 | |
Type of gene | protein-coding | protein-coding | |
Description | pyridoxal kinaseepididymis secretory sperm binding protein Li 1apyridoxal (pyridoxine, vitamin B6) kinasepyridoxamine kinasepyridoxine kinasevitamin B6 kinase | ATP-binding cassette sub-family G member 1ABC transporter 8ATP-binding cassette transporter 8ATP-binding cassette transporter member 1 of subfamily GATP-binding cassette, sub-family G (WHITE), member 1homolog of Drosophila whitewhite protein homolog | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | O00764 | P45844 | |
Ensembl transtripts involved in fusion gene | ENST00000398081, ENST00000468090, ENST00000291565, ENST00000327574, ENST00000476313, ENST00000467908, | ENST00000398457, ENST00000462050, ENST00000347800, ENST00000398449, ENST00000361802, ENST00000343687, ENST00000398437, ENST00000340588, | |
Fusion gene scores | * DoF score | 7 X 7 X 8=392 | 8 X 3 X 7=168 |
# samples | 8 | 8 | |
** MAII score | log2(8/392*10)=-2.29278174922785 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(8/168*10)=-1.0703893278914 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: PDXK [Title/Abstract] AND ABCG1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | PDXK | GO:0008283 | cell proliferation | 10930737 |
Hgene | PDXK | GO:0042823 | pyridoxal phosphate biosynthetic process | 9099727|10987144|17766369 |
Tgene | ABCG1 | GO:0008203 | cholesterol metabolic process | 15994327 |
Tgene | ABCG1 | GO:0010033 | response to organic substance | 11500512 |
Tgene | ABCG1 | GO:0033344 | cholesterol efflux | 15994327 |
Tgene | ABCG1 | GO:0033993 | response to lipid | 16556852 |
Tgene | ABCG1 | GO:0034436 | glycoprotein transport | 17293612 |
Tgene | ABCG1 | GO:0042632 | cholesterol homeostasis | 15994327 |
Tgene | ABCG1 | GO:0042987 | amyloid precursor protein catabolic process | 17293612 |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | BLCA | TCGA-BL-A0C8-01A | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000398081 | ENST00000398457 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
5CDS-3UTR | ENST00000398081 | ENST00000462050 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
5CDS-3UTR | ENST00000398081 | ENST00000347800 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
5CDS-3UTR | ENST00000398081 | ENST00000398449 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
5CDS-3UTR | ENST00000398081 | ENST00000361802 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
5CDS-3UTR | ENST00000398081 | ENST00000343687 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
5CDS-intron | ENST00000398081 | ENST00000398437 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
5CDS-intron | ENST00000398081 | ENST00000340588 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
In-frame | ENST00000468090 | ENST00000398457 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
5CDS-3UTR | ENST00000468090 | ENST00000462050 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
5CDS-3UTR | ENST00000468090 | ENST00000347800 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
5CDS-3UTR | ENST00000468090 | ENST00000398449 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
5CDS-3UTR | ENST00000468090 | ENST00000361802 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
5CDS-3UTR | ENST00000468090 | ENST00000343687 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
5CDS-intron | ENST00000468090 | ENST00000398437 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
5CDS-intron | ENST00000468090 | ENST00000340588 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
In-frame | ENST00000291565 | ENST00000398457 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
5CDS-3UTR | ENST00000291565 | ENST00000462050 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
5CDS-3UTR | ENST00000291565 | ENST00000347800 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
5CDS-3UTR | ENST00000291565 | ENST00000398449 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
5CDS-3UTR | ENST00000291565 | ENST00000361802 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
5CDS-3UTR | ENST00000291565 | ENST00000343687 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
5CDS-intron | ENST00000291565 | ENST00000398437 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
5CDS-intron | ENST00000291565 | ENST00000340588 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
intron-3CDS | ENST00000327574 | ENST00000398457 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
intron-3UTR | ENST00000327574 | ENST00000462050 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
intron-3UTR | ENST00000327574 | ENST00000347800 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
intron-3UTR | ENST00000327574 | ENST00000398449 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
intron-3UTR | ENST00000327574 | ENST00000361802 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
intron-3UTR | ENST00000327574 | ENST00000343687 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
intron-intron | ENST00000327574 | ENST00000398437 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
intron-intron | ENST00000327574 | ENST00000340588 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
intron-3CDS | ENST00000476313 | ENST00000398457 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
intron-3UTR | ENST00000476313 | ENST00000462050 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
intron-3UTR | ENST00000476313 | ENST00000347800 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
intron-3UTR | ENST00000476313 | ENST00000398449 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
intron-3UTR | ENST00000476313 | ENST00000361802 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
intron-3UTR | ENST00000476313 | ENST00000343687 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
intron-intron | ENST00000476313 | ENST00000398437 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
intron-intron | ENST00000476313 | ENST00000340588 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
intron-3CDS | ENST00000467908 | ENST00000398457 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
intron-3UTR | ENST00000467908 | ENST00000462050 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
intron-3UTR | ENST00000467908 | ENST00000347800 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
intron-3UTR | ENST00000467908 | ENST00000398449 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
intron-3UTR | ENST00000467908 | ENST00000361802 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
intron-3UTR | ENST00000467908 | ENST00000343687 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
intron-intron | ENST00000467908 | ENST00000398437 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
intron-intron | ENST00000467908 | ENST00000340588 | PDXK | chr21 | 45139262 | + | ABCG1 | chr21 | 43645781 | + |
Top |
FusionProtFeatures for PDXK_ABCG1 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
PDXK | ABCG1 |
Required for synthesis of pyridoxal-5-phosphate fromvitamin B6. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000343687 | + | 0 | 15 | 415_673 | 25 | 678 | Domain | Note=ABC transmembrane type-2 |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000343687 | + | 0 | 15 | 77_317 | 25 | 678 | Domain | ABC transporter |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000347800 | + | 0 | 15 | 415_673 | 11 | 664 | Domain | Note=ABC transmembrane type-2 |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000347800 | + | 0 | 15 | 77_317 | 11 | 664 | Domain | ABC transporter |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000361802 | + | 0 | 15 | 415_673 | 14 | 679 | Domain | Note=ABC transmembrane type-2 |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000361802 | + | 0 | 15 | 77_317 | 14 | 679 | Domain | ABC transporter |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000398449 | + | 0 | 15 | 415_673 | 14 | 667 | Domain | Note=ABC transmembrane type-2 |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000398449 | + | 0 | 15 | 77_317 | 14 | 667 | Domain | ABC transporter |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000398457 | + | 1 | 16 | 415_673 | 16 | 669 | Domain | Note=ABC transmembrane type-2 |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000398457 | + | 1 | 16 | 77_317 | 16 | 669 | Domain | ABC transporter |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000343687 | + | 0 | 15 | 118_125 | 25 | 678 | Nucleotide binding | ATP |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000347800 | + | 0 | 15 | 118_125 | 11 | 664 | Nucleotide binding | ATP |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000361802 | + | 0 | 15 | 118_125 | 14 | 679 | Nucleotide binding | ATP |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000398449 | + | 0 | 15 | 118_125 | 14 | 667 | Nucleotide binding | ATP |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000398457 | + | 1 | 16 | 118_125 | 16 | 669 | Nucleotide binding | ATP |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000343687 | + | 0 | 15 | 446_456 | 25 | 678 | Topological domain | Extracellular |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000343687 | + | 0 | 15 | 478_506 | 25 | 678 | Topological domain | Cytoplasmic |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000343687 | + | 0 | 15 | 526_533 | 25 | 678 | Topological domain | Extracellular |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000343687 | + | 0 | 15 | 556_567 | 25 | 678 | Topological domain | Cytoplasmic |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000343687 | + | 0 | 15 | 587_649 | 25 | 678 | Topological domain | Extracellular |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000343687 | + | 0 | 15 | 670_678 | 25 | 678 | Topological domain | Cytoplasmic |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000347800 | + | 0 | 15 | 446_456 | 11 | 664 | Topological domain | Extracellular |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000347800 | + | 0 | 15 | 478_506 | 11 | 664 | Topological domain | Cytoplasmic |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000347800 | + | 0 | 15 | 526_533 | 11 | 664 | Topological domain | Extracellular |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000347800 | + | 0 | 15 | 556_567 | 11 | 664 | Topological domain | Cytoplasmic |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000347800 | + | 0 | 15 | 587_649 | 11 | 664 | Topological domain | Extracellular |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000347800 | + | 0 | 15 | 670_678 | 11 | 664 | Topological domain | Cytoplasmic |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000361802 | + | 0 | 15 | 446_456 | 14 | 679 | Topological domain | Extracellular |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000361802 | + | 0 | 15 | 478_506 | 14 | 679 | Topological domain | Cytoplasmic |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000361802 | + | 0 | 15 | 526_533 | 14 | 679 | Topological domain | Extracellular |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000361802 | + | 0 | 15 | 556_567 | 14 | 679 | Topological domain | Cytoplasmic |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000361802 | + | 0 | 15 | 587_649 | 14 | 679 | Topological domain | Extracellular |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000361802 | + | 0 | 15 | 670_678 | 14 | 679 | Topological domain | Cytoplasmic |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000398449 | + | 0 | 15 | 446_456 | 14 | 667 | Topological domain | Extracellular |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000398449 | + | 0 | 15 | 478_506 | 14 | 667 | Topological domain | Cytoplasmic |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000398449 | + | 0 | 15 | 526_533 | 14 | 667 | Topological domain | Extracellular |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000398449 | + | 0 | 15 | 556_567 | 14 | 667 | Topological domain | Cytoplasmic |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000398449 | + | 0 | 15 | 587_649 | 14 | 667 | Topological domain | Extracellular |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000398449 | + | 0 | 15 | 670_678 | 14 | 667 | Topological domain | Cytoplasmic |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000398457 | + | 1 | 16 | 446_456 | 16 | 669 | Topological domain | Extracellular |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000398457 | + | 1 | 16 | 478_506 | 16 | 669 | Topological domain | Cytoplasmic |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000398457 | + | 1 | 16 | 526_533 | 16 | 669 | Topological domain | Extracellular |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000398457 | + | 1 | 16 | 556_567 | 16 | 669 | Topological domain | Cytoplasmic |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000398457 | + | 1 | 16 | 587_649 | 16 | 669 | Topological domain | Extracellular |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000398457 | + | 1 | 16 | 670_678 | 16 | 669 | Topological domain | Cytoplasmic |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000343687 | + | 0 | 15 | 427_445 | 25 | 678 | Transmembrane | Helical |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000343687 | + | 0 | 15 | 457_477 | 25 | 678 | Transmembrane | Helical |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000343687 | + | 0 | 15 | 507_525 | 25 | 678 | Transmembrane | Helical |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000343687 | + | 0 | 15 | 534_555 | 25 | 678 | Transmembrane | Helical |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000343687 | + | 0 | 15 | 568_586 | 25 | 678 | Transmembrane | Helical |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000343687 | + | 0 | 15 | 650_669 | 25 | 678 | Transmembrane | Helical |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000347800 | + | 0 | 15 | 427_445 | 11 | 664 | Transmembrane | Helical |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000347800 | + | 0 | 15 | 457_477 | 11 | 664 | Transmembrane | Helical |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000347800 | + | 0 | 15 | 507_525 | 11 | 664 | Transmembrane | Helical |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000347800 | + | 0 | 15 | 534_555 | 11 | 664 | Transmembrane | Helical |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000347800 | + | 0 | 15 | 568_586 | 11 | 664 | Transmembrane | Helical |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000347800 | + | 0 | 15 | 650_669 | 11 | 664 | Transmembrane | Helical |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000361802 | + | 0 | 15 | 427_445 | 14 | 679 | Transmembrane | Helical |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000361802 | + | 0 | 15 | 457_477 | 14 | 679 | Transmembrane | Helical |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000361802 | + | 0 | 15 | 507_525 | 14 | 679 | Transmembrane | Helical |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000361802 | + | 0 | 15 | 534_555 | 14 | 679 | Transmembrane | Helical |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000361802 | + | 0 | 15 | 568_586 | 14 | 679 | Transmembrane | Helical |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000361802 | + | 0 | 15 | 650_669 | 14 | 679 | Transmembrane | Helical |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000398449 | + | 0 | 15 | 427_445 | 14 | 667 | Transmembrane | Helical |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000398449 | + | 0 | 15 | 457_477 | 14 | 667 | Transmembrane | Helical |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000398449 | + | 0 | 15 | 507_525 | 14 | 667 | Transmembrane | Helical |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000398449 | + | 0 | 15 | 534_555 | 14 | 667 | Transmembrane | Helical |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000398449 | + | 0 | 15 | 568_586 | 14 | 667 | Transmembrane | Helical |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000398449 | + | 0 | 15 | 650_669 | 14 | 667 | Transmembrane | Helical |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000398457 | + | 1 | 16 | 427_445 | 16 | 669 | Transmembrane | Helical |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000398457 | + | 1 | 16 | 457_477 | 16 | 669 | Transmembrane | Helical |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000398457 | + | 1 | 16 | 507_525 | 16 | 669 | Transmembrane | Helical |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000398457 | + | 1 | 16 | 534_555 | 16 | 669 | Transmembrane | Helical |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000398457 | + | 1 | 16 | 568_586 | 16 | 669 | Transmembrane | Helical |
Tgene | >ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000398457 | + | 1 | 16 | 650_669 | 16 | 669 | Transmembrane | Helical |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >PDXK | chr21:45139262 | chr21:43645781 | ENST00000291565 | + | 1 | 11 | 186_187 | 29 | 313 | Nucleotide binding | ATP |
Hgene | >PDXK | chr21:45139262 | chr21:43645781 | ENST00000291565 | + | 1 | 11 | 223_234 | 29 | 313 | Nucleotide binding | ATP |
Hgene | >PDXK | chr21:45139262 | chr21:43645781 | ENST00000468090 | + | 1 | 10 | 186_187 | 29 | 285 | Nucleotide binding | ATP |
Hgene | >PDXK | chr21:45139262 | chr21:43645781 | ENST00000468090 | + | 1 | 10 | 223_234 | 29 | 285 | Nucleotide binding | ATP |
Tgene | ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000343687 | + | 0 | 15 | 1_426 | 25 | 678 | Topological domain | Cytoplasmic |
Tgene | ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000347800 | + | 0 | 15 | 1_426 | 11 | 664 | Topological domain | Cytoplasmic |
Tgene | ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000361802 | + | 0 | 15 | 1_426 | 14 | 679 | Topological domain | Cytoplasmic |
Tgene | ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000398449 | + | 0 | 15 | 1_426 | 14 | 667 | Topological domain | Cytoplasmic |
Tgene | ABCG1 | chr21:45139262 | chr21:43645781 | ENST00000398457 | + | 1 | 16 | 1_426 | 16 | 669 | Topological domain | Cytoplasmic |
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FusionGeneSequence for PDXK_ABCG1 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_PDXK_ENST00000398081_chr21_45139262_+_ABCG1_ENST00000398457_chr21_43645781_+_682aa MEEECRVLSIQSHVIRGYVGNRAATFPLQNASSYSAEMTEPKSVCVSVDEVVSSNMEATETDLLNGHLKKVDNNLTEAQRFSSLPRRAAV NIEFRDLSYSVPEGPWWRKKGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGMKGAVLINGLPRDLRCFRKVSCYIMQD DMLLPHLTVQEAMMVSAHLKLQEKDEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQV VSLMKGLAQGGRSIICTIHQPSAKLFELFDQLYVLSQGQCVYRGKVCNLVPYLRDLGLNCPTYHNPADFVMEVASGEYGDQNSRLVRAVR EGMCDSDHKRDLGGDAEVNPFLWHRPSEEDSSSMEGCHSFSASCLTQFCILFKRTFLSIMRDSVLTHLRITSHIGIGLLIGLLYLGIGNE AKKVLSNSGFLFFSMLFLMFAALMPTVLTFPLEMGVFLREHLNYWYSLKAYYLAKTMADVPFQIMFPVAYCSIVYWMTSQPSDAVRFVLF AALGTMTSLVAQSLGLLIGAASTSLQVATFVGPVTAIPVLLFSGFFVSFDTIPTYLQWMSYISYVRYGFEGVILSIYGLDREDLHCDIDE >In-frame_PDXK_ENST00000468090_chr21_45139262_+_ABCG1_ENST00000398457_chr21_43645781_+_682aa MEEECRVLSIQSHVIRGYVGNRAATFPLQNASSYSAEMTEPKSVCVSVDEVVSSNMEATETDLLNGHLKKVDNNLTEAQRFSSLPRRAAV NIEFRDLSYSVPEGPWWRKKGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGMKGAVLINGLPRDLRCFRKVSCYIMQD DMLLPHLTVQEAMMVSAHLKLQEKDEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQV VSLMKGLAQGGRSIICTIHQPSAKLFELFDQLYVLSQGQCVYRGKVCNLVPYLRDLGLNCPTYHNPADFVMEVASGEYGDQNSRLVRAVR EGMCDSDHKRDLGGDAEVNPFLWHRPSEEDSSSMEGCHSFSASCLTQFCILFKRTFLSIMRDSVLTHLRITSHIGIGLLIGLLYLGIGNE AKKVLSNSGFLFFSMLFLMFAALMPTVLTFPLEMGVFLREHLNYWYSLKAYYLAKTMADVPFQIMFPVAYCSIVYWMTSQPSDAVRFVLF AALGTMTSLVAQSLGLLIGAASTSLQVATFVGPVTAIPVLLFSGFFVSFDTIPTYLQWMSYISYVRYGFEGVILSIYGLDREDLHCDIDE >In-frame_PDXK_ENST00000291565_chr21_45139262_+_ABCG1_ENST00000398457_chr21_43645781_+_682aa MEEECRVLSIQSHVIRGYVGNRAATFPLQNASSYSAEMTEPKSVCVSVDEVVSSNMEATETDLLNGHLKKVDNNLTEAQRFSSLPRRAAV NIEFRDLSYSVPEGPWWRKKGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGMKGAVLINGLPRDLRCFRKVSCYIMQD DMLLPHLTVQEAMMVSAHLKLQEKDEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQV VSLMKGLAQGGRSIICTIHQPSAKLFELFDQLYVLSQGQCVYRGKVCNLVPYLRDLGLNCPTYHNPADFVMEVASGEYGDQNSRLVRAVR EGMCDSDHKRDLGGDAEVNPFLWHRPSEEDSSSMEGCHSFSASCLTQFCILFKRTFLSIMRDSVLTHLRITSHIGIGLLIGLLYLGIGNE AKKVLSNSGFLFFSMLFLMFAALMPTVLTFPLEMGVFLREHLNYWYSLKAYYLAKTMADVPFQIMFPVAYCSIVYWMTSQPSDAVRFVLF AALGTMTSLVAQSLGLLIGAASTSLQVATFVGPVTAIPVLLFSGFFVSFDTIPTYLQWMSYISYVRYGFEGVILSIYGLDREDLHCDIDE |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_PDXK_ENST00000398081_chr21_45139262_+_ABCG1_ENST00000398457_chr21_43645781_+_2046nt ATGGAGGAGGAGTGCCGGGTGCTCTCCATACAGAGCCACGTCATCCGCGGCTACGTGGGCAACCGGGCGGCCACGTTCCCGCTGCAGAAT GCCAGCAGTTACTCTGCAGAGATGACGGAGCCCAAGTCGGTGTGTGTCTCGGTGGATGAGGTGGTGTCCAGCAACATGGAGGCCACTGAG ACGGACCTGCTGAATGGACATCTGAAAAAAGTAGATAATAACCTCACGGAAGCCCAGCGCTTCTCCTCCTTGCCTCGGAGGGCAGCTGTG AACATTGAATTCAGGGACCTTTCCTATTCGGTTCCTGAAGGACCCTGGTGGAGGAAGAAAGGATACAAGACCCTCCTGAAAGGAATTTCC GGGAAGTTCAATAGTGGTGAGTTGGTGGCCATTATGGGTCCTTCCGGGGCCGGGAAGTCCACGCTGATGAACATCCTGGCTGGATACAGG GAGACGGGCATGAAGGGGGCCGTCCTCATCAACGGCCTGCCCCGGGACCTGCGCTGCTTCCGGAAGGTGTCCTGCTACATCATGCAGGAT GACATGCTGCTGCCGCATCTCACTGTGCAGGAGGCCATGATGGTGTCGGCACATCTGAAGCTTCAGGAGAAGGATGAAGGCAGAAGGGAA ATGGTCAAGGAGATACTGACAGCGCTGGGCTTGCTGTCTTGCGCCAACACGCGGACCGGGAGCCTGTCAGGTGGTCAGCGCAAGCGCCTG GCCATCGCGCTGGAGCTGGTGAACAACCCTCCAGTCATGTTCTTCGATGAGCCCACCAGCGGCCTGGACAGCGCCTCCTGCTTCCAGGTG GTCTCGCTGATGAAAGGGCTCGCTCAAGGGGGTCGCTCCATCATTTGCACCATCCACCAGCCCAGCGCCAAACTCTTCGAGCTGTTCGAC CAGCTTTACGTCCTGAGTCAAGGACAATGTGTGTACCGGGGAAAAGTCTGCAATCTTGTGCCATATTTGAGGGATTTGGGTCTGAACTGC CCAACCTACCACAACCCAGCAGATTTTGTCATGGAGGTTGCATCCGGCGAGTACGGTGATCAGAACAGTCGGCTGGTGAGAGCGGTTCGG GAGGGCATGTGTGACTCAGACCACAAGAGAGACCTCGGGGGTGATGCCGAGGTGAACCCTTTTCTTTGGCACCGGCCCTCTGAAGAGGAC TCCTCGTCCATGGAAGGCTGCCACAGCTTCTCTGCCAGCTGCCTCACGCAGTTCTGCATCCTCTTCAAGAGGACCTTCCTCAGCATCATG AGGGACTCGGTCCTGACACACCTGCGCATCACCTCGCACATTGGGATCGGCCTCCTCATTGGCCTGCTGTACTTGGGGATCGGGAACGAA GCCAAGAAGGTCTTGAGCAACTCCGGCTTCCTCTTCTTCTCCATGCTGTTCCTCATGTTCGCGGCCCTCATGCCTACTGTTCTGACATTT CCCCTGGAGATGGGAGTCTTTCTTCGGGAACACCTGAACTACTGGTACAGCCTGAAGGCCTACTACCTGGCCAAGACCATGGCAGACGTG CCCTTTCAGATCATGTTCCCAGTGGCCTACTGCAGCATCGTGTACTGGATGACGTCGCAGCCGTCCGACGCCGTGCGCTTTGTGCTGTTT GCCGCGCTGGGCACCATGACCTCCCTGGTGGCACAGTCCCTGGGCCTGCTGATCGGAGCCGCCTCCACGTCCCTGCAGGTGGCCACTTTC GTGGGCCCAGTGACAGCCATCCCGGTGCTCCTGTTCTCGGGGTTCTTCGTCAGCTTCGACACCATCCCCACGTACCTACAGTGGATGTCC TACATCTCCTATGTCAGGTATGGGTTCGAAGGGGTCATCCTCTCCATCTATGGCTTAGACCGGGAAGATCTGCACTGTGACATCGACGAG ACGTGCCACTTCCAGAAGTCGGAGGCCATCCTGCGGGAGCTGGACGTGGAAAATGCCAAGCTGTACCTGGACTTCATCGTACTCGGGATT >In-frame_PDXK_ENST00000468090_chr21_45139262_+_ABCG1_ENST00000398457_chr21_43645781_+_2046nt ATGGAGGAGGAGTGCCGGGTGCTCTCCATACAGAGCCACGTCATCCGCGGCTACGTGGGCAACCGGGCGGCCACGTTCCCGCTGCAGAAT GCCAGCAGTTACTCTGCAGAGATGACGGAGCCCAAGTCGGTGTGTGTCTCGGTGGATGAGGTGGTGTCCAGCAACATGGAGGCCACTGAG ACGGACCTGCTGAATGGACATCTGAAAAAAGTAGATAATAACCTCACGGAAGCCCAGCGCTTCTCCTCCTTGCCTCGGAGGGCAGCTGTG AACATTGAATTCAGGGACCTTTCCTATTCGGTTCCTGAAGGACCCTGGTGGAGGAAGAAAGGATACAAGACCCTCCTGAAAGGAATTTCC GGGAAGTTCAATAGTGGTGAGTTGGTGGCCATTATGGGTCCTTCCGGGGCCGGGAAGTCCACGCTGATGAACATCCTGGCTGGATACAGG GAGACGGGCATGAAGGGGGCCGTCCTCATCAACGGCCTGCCCCGGGACCTGCGCTGCTTCCGGAAGGTGTCCTGCTACATCATGCAGGAT GACATGCTGCTGCCGCATCTCACTGTGCAGGAGGCCATGATGGTGTCGGCACATCTGAAGCTTCAGGAGAAGGATGAAGGCAGAAGGGAA ATGGTCAAGGAGATACTGACAGCGCTGGGCTTGCTGTCTTGCGCCAACACGCGGACCGGGAGCCTGTCAGGTGGTCAGCGCAAGCGCCTG GCCATCGCGCTGGAGCTGGTGAACAACCCTCCAGTCATGTTCTTCGATGAGCCCACCAGCGGCCTGGACAGCGCCTCCTGCTTCCAGGTG GTCTCGCTGATGAAAGGGCTCGCTCAAGGGGGTCGCTCCATCATTTGCACCATCCACCAGCCCAGCGCCAAACTCTTCGAGCTGTTCGAC CAGCTTTACGTCCTGAGTCAAGGACAATGTGTGTACCGGGGAAAAGTCTGCAATCTTGTGCCATATTTGAGGGATTTGGGTCTGAACTGC CCAACCTACCACAACCCAGCAGATTTTGTCATGGAGGTTGCATCCGGCGAGTACGGTGATCAGAACAGTCGGCTGGTGAGAGCGGTTCGG GAGGGCATGTGTGACTCAGACCACAAGAGAGACCTCGGGGGTGATGCCGAGGTGAACCCTTTTCTTTGGCACCGGCCCTCTGAAGAGGAC TCCTCGTCCATGGAAGGCTGCCACAGCTTCTCTGCCAGCTGCCTCACGCAGTTCTGCATCCTCTTCAAGAGGACCTTCCTCAGCATCATG AGGGACTCGGTCCTGACACACCTGCGCATCACCTCGCACATTGGGATCGGCCTCCTCATTGGCCTGCTGTACTTGGGGATCGGGAACGAA GCCAAGAAGGTCTTGAGCAACTCCGGCTTCCTCTTCTTCTCCATGCTGTTCCTCATGTTCGCGGCCCTCATGCCTACTGTTCTGACATTT CCCCTGGAGATGGGAGTCTTTCTTCGGGAACACCTGAACTACTGGTACAGCCTGAAGGCCTACTACCTGGCCAAGACCATGGCAGACGTG CCCTTTCAGATCATGTTCCCAGTGGCCTACTGCAGCATCGTGTACTGGATGACGTCGCAGCCGTCCGACGCCGTGCGCTTTGTGCTGTTT GCCGCGCTGGGCACCATGACCTCCCTGGTGGCACAGTCCCTGGGCCTGCTGATCGGAGCCGCCTCCACGTCCCTGCAGGTGGCCACTTTC GTGGGCCCAGTGACAGCCATCCCGGTGCTCCTGTTCTCGGGGTTCTTCGTCAGCTTCGACACCATCCCCACGTACCTACAGTGGATGTCC TACATCTCCTATGTCAGGTATGGGTTCGAAGGGGTCATCCTCTCCATCTATGGCTTAGACCGGGAAGATCTGCACTGTGACATCGACGAG ACGTGCCACTTCCAGAAGTCGGAGGCCATCCTGCGGGAGCTGGACGTGGAAAATGCCAAGCTGTACCTGGACTTCATCGTACTCGGGATT >In-frame_PDXK_ENST00000291565_chr21_45139262_+_ABCG1_ENST00000398457_chr21_43645781_+_2046nt ATGGAGGAGGAGTGCCGGGTGCTCTCCATACAGAGCCACGTCATCCGCGGCTACGTGGGCAACCGGGCGGCCACGTTCCCGCTGCAGAAT GCCAGCAGTTACTCTGCAGAGATGACGGAGCCCAAGTCGGTGTGTGTCTCGGTGGATGAGGTGGTGTCCAGCAACATGGAGGCCACTGAG ACGGACCTGCTGAATGGACATCTGAAAAAAGTAGATAATAACCTCACGGAAGCCCAGCGCTTCTCCTCCTTGCCTCGGAGGGCAGCTGTG AACATTGAATTCAGGGACCTTTCCTATTCGGTTCCTGAAGGACCCTGGTGGAGGAAGAAAGGATACAAGACCCTCCTGAAAGGAATTTCC GGGAAGTTCAATAGTGGTGAGTTGGTGGCCATTATGGGTCCTTCCGGGGCCGGGAAGTCCACGCTGATGAACATCCTGGCTGGATACAGG GAGACGGGCATGAAGGGGGCCGTCCTCATCAACGGCCTGCCCCGGGACCTGCGCTGCTTCCGGAAGGTGTCCTGCTACATCATGCAGGAT GACATGCTGCTGCCGCATCTCACTGTGCAGGAGGCCATGATGGTGTCGGCACATCTGAAGCTTCAGGAGAAGGATGAAGGCAGAAGGGAA ATGGTCAAGGAGATACTGACAGCGCTGGGCTTGCTGTCTTGCGCCAACACGCGGACCGGGAGCCTGTCAGGTGGTCAGCGCAAGCGCCTG GCCATCGCGCTGGAGCTGGTGAACAACCCTCCAGTCATGTTCTTCGATGAGCCCACCAGCGGCCTGGACAGCGCCTCCTGCTTCCAGGTG GTCTCGCTGATGAAAGGGCTCGCTCAAGGGGGTCGCTCCATCATTTGCACCATCCACCAGCCCAGCGCCAAACTCTTCGAGCTGTTCGAC CAGCTTTACGTCCTGAGTCAAGGACAATGTGTGTACCGGGGAAAAGTCTGCAATCTTGTGCCATATTTGAGGGATTTGGGTCTGAACTGC CCAACCTACCACAACCCAGCAGATTTTGTCATGGAGGTTGCATCCGGCGAGTACGGTGATCAGAACAGTCGGCTGGTGAGAGCGGTTCGG GAGGGCATGTGTGACTCAGACCACAAGAGAGACCTCGGGGGTGATGCCGAGGTGAACCCTTTTCTTTGGCACCGGCCCTCTGAAGAGGAC TCCTCGTCCATGGAAGGCTGCCACAGCTTCTCTGCCAGCTGCCTCACGCAGTTCTGCATCCTCTTCAAGAGGACCTTCCTCAGCATCATG AGGGACTCGGTCCTGACACACCTGCGCATCACCTCGCACATTGGGATCGGCCTCCTCATTGGCCTGCTGTACTTGGGGATCGGGAACGAA GCCAAGAAGGTCTTGAGCAACTCCGGCTTCCTCTTCTTCTCCATGCTGTTCCTCATGTTCGCGGCCCTCATGCCTACTGTTCTGACATTT CCCCTGGAGATGGGAGTCTTTCTTCGGGAACACCTGAACTACTGGTACAGCCTGAAGGCCTACTACCTGGCCAAGACCATGGCAGACGTG CCCTTTCAGATCATGTTCCCAGTGGCCTACTGCAGCATCGTGTACTGGATGACGTCGCAGCCGTCCGACGCCGTGCGCTTTGTGCTGTTT GCCGCGCTGGGCACCATGACCTCCCTGGTGGCACAGTCCCTGGGCCTGCTGATCGGAGCCGCCTCCACGTCCCTGCAGGTGGCCACTTTC GTGGGCCCAGTGACAGCCATCCCGGTGCTCCTGTTCTCGGGGTTCTTCGTCAGCTTCGACACCATCCCCACGTACCTACAGTGGATGTCC TACATCTCCTATGTCAGGTATGGGTTCGAAGGGGTCATCCTCTCCATCTATGGCTTAGACCGGGAAGATCTGCACTGTGACATCGACGAG ACGTGCCACTTCCAGAAGTCGGAGGCCATCCTGCGGGAGCTGGACGTGGAAAATGCCAAGCTGTACCTGGACTTCATCGTACTCGGGATT |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_PDXK_ENST00000398081_chr21_45139262_+_ABCG1_ENST00000398457_chr21_43645781_+_3099nt GCGCGGAACTCGCGGGTTCGGAGCCGCCCGCTGAGGTCAGAAGGAGGCGTCTGCGCTGATCGGGTCCGCCGCGCGCCAGAGCCAGAGTCG CAGCCGAGGGGAGCCGGGGCCGGAGCCCGAGCCCGAGCCGAGCCGGAGCCCGAGCGAGCGGCGGAGACCGTGCCCCCGCCTCGGCCCCGC GCCGCCGCGGCCAGGCCCGGCATGGAGGAGGAGTGCCGGGTGCTCTCCATACAGAGCCACGTCATCCGCGGCTACGTGGGCAACCGGGCG GCCACGTTCCCGCTGCAGAATGCCAGCAGTTACTCTGCAGAGATGACGGAGCCCAAGTCGGTGTGTGTCTCGGTGGATGAGGTGGTGTCC AGCAACATGGAGGCCACTGAGACGGACCTGCTGAATGGACATCTGAAAAAAGTAGATAATAACCTCACGGAAGCCCAGCGCTTCTCCTCC TTGCCTCGGAGGGCAGCTGTGAACATTGAATTCAGGGACCTTTCCTATTCGGTTCCTGAAGGACCCTGGTGGAGGAAGAAAGGATACAAG ACCCTCCTGAAAGGAATTTCCGGGAAGTTCAATAGTGGTGAGTTGGTGGCCATTATGGGTCCTTCCGGGGCCGGGAAGTCCACGCTGATG AACATCCTGGCTGGATACAGGGAGACGGGCATGAAGGGGGCCGTCCTCATCAACGGCCTGCCCCGGGACCTGCGCTGCTTCCGGAAGGTG TCCTGCTACATCATGCAGGATGACATGCTGCTGCCGCATCTCACTGTGCAGGAGGCCATGATGGTGTCGGCACATCTGAAGCTTCAGGAG AAGGATGAAGGCAGAAGGGAAATGGTCAAGGAGATACTGACAGCGCTGGGCTTGCTGTCTTGCGCCAACACGCGGACCGGGAGCCTGTCA GGTGGTCAGCGCAAGCGCCTGGCCATCGCGCTGGAGCTGGTGAACAACCCTCCAGTCATGTTCTTCGATGAGCCCACCAGCGGCCTGGAC AGCGCCTCCTGCTTCCAGGTGGTCTCGCTGATGAAAGGGCTCGCTCAAGGGGGTCGCTCCATCATTTGCACCATCCACCAGCCCAGCGCC AAACTCTTCGAGCTGTTCGACCAGCTTTACGTCCTGAGTCAAGGACAATGTGTGTACCGGGGAAAAGTCTGCAATCTTGTGCCATATTTG AGGGATTTGGGTCTGAACTGCCCAACCTACCACAACCCAGCAGATTTTGTCATGGAGGTTGCATCCGGCGAGTACGGTGATCAGAACAGT CGGCTGGTGAGAGCGGTTCGGGAGGGCATGTGTGACTCAGACCACAAGAGAGACCTCGGGGGTGATGCCGAGGTGAACCCTTTTCTTTGG CACCGGCCCTCTGAAGAGGACTCCTCGTCCATGGAAGGCTGCCACAGCTTCTCTGCCAGCTGCCTCACGCAGTTCTGCATCCTCTTCAAG AGGACCTTCCTCAGCATCATGAGGGACTCGGTCCTGACACACCTGCGCATCACCTCGCACATTGGGATCGGCCTCCTCATTGGCCTGCTG TACTTGGGGATCGGGAACGAAGCCAAGAAGGTCTTGAGCAACTCCGGCTTCCTCTTCTTCTCCATGCTGTTCCTCATGTTCGCGGCCCTC ATGCCTACTGTTCTGACATTTCCCCTGGAGATGGGAGTCTTTCTTCGGGAACACCTGAACTACTGGTACAGCCTGAAGGCCTACTACCTG GCCAAGACCATGGCAGACGTGCCCTTTCAGATCATGTTCCCAGTGGCCTACTGCAGCATCGTGTACTGGATGACGTCGCAGCCGTCCGAC GCCGTGCGCTTTGTGCTGTTTGCCGCGCTGGGCACCATGACCTCCCTGGTGGCACAGTCCCTGGGCCTGCTGATCGGAGCCGCCTCCACG TCCCTGCAGGTGGCCACTTTCGTGGGCCCAGTGACAGCCATCCCGGTGCTCCTGTTCTCGGGGTTCTTCGTCAGCTTCGACACCATCCCC ACGTACCTACAGTGGATGTCCTACATCTCCTATGTCAGGTATGGGTTCGAAGGGGTCATCCTCTCCATCTATGGCTTAGACCGGGAAGAT CTGCACTGTGACATCGACGAGACGTGCCACTTCCAGAAGTCGGAGGCCATCCTGCGGGAGCTGGACGTGGAAAATGCCAAGCTGTACCTG GACTTCATCGTACTCGGGATTTTCTTCATCTCCCTCCGCCTCATTGCCTATTTTGTCCTCAGGTACAAAATCCGGGCAGAGAGGTAAAAC ACCTGAATGCCAGGAAACAGGAAGATTAGACACTGTGGCCGAGGGCACGTCTAGAATCGAGGAGGCAAGCCTGTGCCCGACCGACGACAC AGAGACTCTTCTGATCCAACCCCTAGAACCGCGTTGGGTTTGTGGGTGTCTCGTGCTCAGCCACTCTGCCCAGCTGGGTTGGATCTTCTC TCCATTCCCCTTTCTAGCTTTAACTAGGAAGATGTAGGCAGATTGGTGGTTTTTTTTTTTTTAACATACAGAATTTTAAATACCACAACT GGGGCAGAATTTAAAGCTGCAACACAGCTGGTGATGAGAGGCTTCCTCAGTCCAGTCGCTCCTTAGCACCAGGCACCGTGGGTCCTGGAT GGGGAACTGCAAGCAGCCTCTCAGCTGATGGCTGCACAGTCAGATGTCTGGTGGCAGAGAGTCCGAGCATGGAGCGATTCCATTTTATGA CTGTTGTTTTTCACATTTTCATCTTTCTAAGGTGTGTCTCTTTTCCAATGAGAAGTCATTTTTGCAAGCCAAAAGTCGATCAATCGCATT CATTTTAAGAAATTATACCTTTTTAGTACTTGCTGAAGAATGATTCAGGGTAAATCACATACTTTGTTTAGAGAGGCGAGGGGTTTAACC GAGTCACCCAGCTGGTCTCATACATAGACAGCACTTGTGAAGGATTGAATGCAGGTTCCAGGTGGAGGGAAGACGTGGACACCATCTCCA CTGAGCCATGCAGACATTTTTAAAAGCTATACAAAAAATTGTGAGAAGACATTGGCCAACTCTTTCAAAGTCTTTCTTTTTCCACGTGCT >In-frame_PDXK_ENST00000468090_chr21_45139262_+_ABCG1_ENST00000398457_chr21_43645781_+_3096nt CGGAACTCGCGGGTTCGGAGCCGCCCGCTGAGGTCAGAAGGAGGCGTCTGCGCTGATCGGGTCCGCCGCGCGCCAGAGCCAGAGTCGCAG CCGAGGGGAGCCGGGGCCGGAGCCCGAGCCCGAGCCGAGCCGGAGCCCGAGCGAGCGGCGGAGACCGTGCCCCCGCCTCGGCCCCGCGCC GCCGCGGCCAGGCCCGGCATGGAGGAGGAGTGCCGGGTGCTCTCCATACAGAGCCACGTCATCCGCGGCTACGTGGGCAACCGGGCGGCC ACGTTCCCGCTGCAGAATGCCAGCAGTTACTCTGCAGAGATGACGGAGCCCAAGTCGGTGTGTGTCTCGGTGGATGAGGTGGTGTCCAGC AACATGGAGGCCACTGAGACGGACCTGCTGAATGGACATCTGAAAAAAGTAGATAATAACCTCACGGAAGCCCAGCGCTTCTCCTCCTTG CCTCGGAGGGCAGCTGTGAACATTGAATTCAGGGACCTTTCCTATTCGGTTCCTGAAGGACCCTGGTGGAGGAAGAAAGGATACAAGACC CTCCTGAAAGGAATTTCCGGGAAGTTCAATAGTGGTGAGTTGGTGGCCATTATGGGTCCTTCCGGGGCCGGGAAGTCCACGCTGATGAAC ATCCTGGCTGGATACAGGGAGACGGGCATGAAGGGGGCCGTCCTCATCAACGGCCTGCCCCGGGACCTGCGCTGCTTCCGGAAGGTGTCC TGCTACATCATGCAGGATGACATGCTGCTGCCGCATCTCACTGTGCAGGAGGCCATGATGGTGTCGGCACATCTGAAGCTTCAGGAGAAG GATGAAGGCAGAAGGGAAATGGTCAAGGAGATACTGACAGCGCTGGGCTTGCTGTCTTGCGCCAACACGCGGACCGGGAGCCTGTCAGGT GGTCAGCGCAAGCGCCTGGCCATCGCGCTGGAGCTGGTGAACAACCCTCCAGTCATGTTCTTCGATGAGCCCACCAGCGGCCTGGACAGC GCCTCCTGCTTCCAGGTGGTCTCGCTGATGAAAGGGCTCGCTCAAGGGGGTCGCTCCATCATTTGCACCATCCACCAGCCCAGCGCCAAA CTCTTCGAGCTGTTCGACCAGCTTTACGTCCTGAGTCAAGGACAATGTGTGTACCGGGGAAAAGTCTGCAATCTTGTGCCATATTTGAGG GATTTGGGTCTGAACTGCCCAACCTACCACAACCCAGCAGATTTTGTCATGGAGGTTGCATCCGGCGAGTACGGTGATCAGAACAGTCGG CTGGTGAGAGCGGTTCGGGAGGGCATGTGTGACTCAGACCACAAGAGAGACCTCGGGGGTGATGCCGAGGTGAACCCTTTTCTTTGGCAC CGGCCCTCTGAAGAGGACTCCTCGTCCATGGAAGGCTGCCACAGCTTCTCTGCCAGCTGCCTCACGCAGTTCTGCATCCTCTTCAAGAGG ACCTTCCTCAGCATCATGAGGGACTCGGTCCTGACACACCTGCGCATCACCTCGCACATTGGGATCGGCCTCCTCATTGGCCTGCTGTAC TTGGGGATCGGGAACGAAGCCAAGAAGGTCTTGAGCAACTCCGGCTTCCTCTTCTTCTCCATGCTGTTCCTCATGTTCGCGGCCCTCATG CCTACTGTTCTGACATTTCCCCTGGAGATGGGAGTCTTTCTTCGGGAACACCTGAACTACTGGTACAGCCTGAAGGCCTACTACCTGGCC AAGACCATGGCAGACGTGCCCTTTCAGATCATGTTCCCAGTGGCCTACTGCAGCATCGTGTACTGGATGACGTCGCAGCCGTCCGACGCC GTGCGCTTTGTGCTGTTTGCCGCGCTGGGCACCATGACCTCCCTGGTGGCACAGTCCCTGGGCCTGCTGATCGGAGCCGCCTCCACGTCC CTGCAGGTGGCCACTTTCGTGGGCCCAGTGACAGCCATCCCGGTGCTCCTGTTCTCGGGGTTCTTCGTCAGCTTCGACACCATCCCCACG TACCTACAGTGGATGTCCTACATCTCCTATGTCAGGTATGGGTTCGAAGGGGTCATCCTCTCCATCTATGGCTTAGACCGGGAAGATCTG CACTGTGACATCGACGAGACGTGCCACTTCCAGAAGTCGGAGGCCATCCTGCGGGAGCTGGACGTGGAAAATGCCAAGCTGTACCTGGAC TTCATCGTACTCGGGATTTTCTTCATCTCCCTCCGCCTCATTGCCTATTTTGTCCTCAGGTACAAAATCCGGGCAGAGAGGTAAAACACC TGAATGCCAGGAAACAGGAAGATTAGACACTGTGGCCGAGGGCACGTCTAGAATCGAGGAGGCAAGCCTGTGCCCGACCGACGACACAGA GACTCTTCTGATCCAACCCCTAGAACCGCGTTGGGTTTGTGGGTGTCTCGTGCTCAGCCACTCTGCCCAGCTGGGTTGGATCTTCTCTCC ATTCCCCTTTCTAGCTTTAACTAGGAAGATGTAGGCAGATTGGTGGTTTTTTTTTTTTTAACATACAGAATTTTAAATACCACAACTGGG GCAGAATTTAAAGCTGCAACACAGCTGGTGATGAGAGGCTTCCTCAGTCCAGTCGCTCCTTAGCACCAGGCACCGTGGGTCCTGGATGGG GAACTGCAAGCAGCCTCTCAGCTGATGGCTGCACAGTCAGATGTCTGGTGGCAGAGAGTCCGAGCATGGAGCGATTCCATTTTATGACTG TTGTTTTTCACATTTTCATCTTTCTAAGGTGTGTCTCTTTTCCAATGAGAAGTCATTTTTGCAAGCCAAAAGTCGATCAATCGCATTCAT TTTAAGAAATTATACCTTTTTAGTACTTGCTGAAGAATGATTCAGGGTAAATCACATACTTTGTTTAGAGAGGCGAGGGGTTTAACCGAG TCACCCAGCTGGTCTCATACATAGACAGCACTTGTGAAGGATTGAATGCAGGTTCCAGGTGGAGGGAAGACGTGGACACCATCTCCACTG AGCCATGCAGACATTTTTAAAAGCTATACAAAAAATTGTGAGAAGACATTGGCCAACTCTTTCAAAGTCTTTCTTTTTCCACGTGCTTCT >In-frame_PDXK_ENST00000291565_chr21_45139262_+_ABCG1_ENST00000398457_chr21_43645781_+_3081nt CGGAGCCGCCCGCTGAGGTCAGAAGGAGGCGTCTGCGCTGATCGGGTCCGCCGCGCGCCAGAGCCAGAGTCGCAGCCGAGGGGAGCCGGG GCCGGAGCCCGAGCCCGAGCCGAGCCGGAGCCCGAGCGAGCGGCGGAGACCGTGCCCCCGCCTCGGCCCCGCGCCGCCGCGGCCAGGCCC GGCATGGAGGAGGAGTGCCGGGTGCTCTCCATACAGAGCCACGTCATCCGCGGCTACGTGGGCAACCGGGCGGCCACGTTCCCGCTGCAG AATGCCAGCAGTTACTCTGCAGAGATGACGGAGCCCAAGTCGGTGTGTGTCTCGGTGGATGAGGTGGTGTCCAGCAACATGGAGGCCACT GAGACGGACCTGCTGAATGGACATCTGAAAAAAGTAGATAATAACCTCACGGAAGCCCAGCGCTTCTCCTCCTTGCCTCGGAGGGCAGCT GTGAACATTGAATTCAGGGACCTTTCCTATTCGGTTCCTGAAGGACCCTGGTGGAGGAAGAAAGGATACAAGACCCTCCTGAAAGGAATT TCCGGGAAGTTCAATAGTGGTGAGTTGGTGGCCATTATGGGTCCTTCCGGGGCCGGGAAGTCCACGCTGATGAACATCCTGGCTGGATAC AGGGAGACGGGCATGAAGGGGGCCGTCCTCATCAACGGCCTGCCCCGGGACCTGCGCTGCTTCCGGAAGGTGTCCTGCTACATCATGCAG GATGACATGCTGCTGCCGCATCTCACTGTGCAGGAGGCCATGATGGTGTCGGCACATCTGAAGCTTCAGGAGAAGGATGAAGGCAGAAGG GAAATGGTCAAGGAGATACTGACAGCGCTGGGCTTGCTGTCTTGCGCCAACACGCGGACCGGGAGCCTGTCAGGTGGTCAGCGCAAGCGC CTGGCCATCGCGCTGGAGCTGGTGAACAACCCTCCAGTCATGTTCTTCGATGAGCCCACCAGCGGCCTGGACAGCGCCTCCTGCTTCCAG GTGGTCTCGCTGATGAAAGGGCTCGCTCAAGGGGGTCGCTCCATCATTTGCACCATCCACCAGCCCAGCGCCAAACTCTTCGAGCTGTTC GACCAGCTTTACGTCCTGAGTCAAGGACAATGTGTGTACCGGGGAAAAGTCTGCAATCTTGTGCCATATTTGAGGGATTTGGGTCTGAAC TGCCCAACCTACCACAACCCAGCAGATTTTGTCATGGAGGTTGCATCCGGCGAGTACGGTGATCAGAACAGTCGGCTGGTGAGAGCGGTT CGGGAGGGCATGTGTGACTCAGACCACAAGAGAGACCTCGGGGGTGATGCCGAGGTGAACCCTTTTCTTTGGCACCGGCCCTCTGAAGAG GACTCCTCGTCCATGGAAGGCTGCCACAGCTTCTCTGCCAGCTGCCTCACGCAGTTCTGCATCCTCTTCAAGAGGACCTTCCTCAGCATC ATGAGGGACTCGGTCCTGACACACCTGCGCATCACCTCGCACATTGGGATCGGCCTCCTCATTGGCCTGCTGTACTTGGGGATCGGGAAC GAAGCCAAGAAGGTCTTGAGCAACTCCGGCTTCCTCTTCTTCTCCATGCTGTTCCTCATGTTCGCGGCCCTCATGCCTACTGTTCTGACA TTTCCCCTGGAGATGGGAGTCTTTCTTCGGGAACACCTGAACTACTGGTACAGCCTGAAGGCCTACTACCTGGCCAAGACCATGGCAGAC GTGCCCTTTCAGATCATGTTCCCAGTGGCCTACTGCAGCATCGTGTACTGGATGACGTCGCAGCCGTCCGACGCCGTGCGCTTTGTGCTG TTTGCCGCGCTGGGCACCATGACCTCCCTGGTGGCACAGTCCCTGGGCCTGCTGATCGGAGCCGCCTCCACGTCCCTGCAGGTGGCCACT TTCGTGGGCCCAGTGACAGCCATCCCGGTGCTCCTGTTCTCGGGGTTCTTCGTCAGCTTCGACACCATCCCCACGTACCTACAGTGGATG TCCTACATCTCCTATGTCAGGTATGGGTTCGAAGGGGTCATCCTCTCCATCTATGGCTTAGACCGGGAAGATCTGCACTGTGACATCGAC GAGACGTGCCACTTCCAGAAGTCGGAGGCCATCCTGCGGGAGCTGGACGTGGAAAATGCCAAGCTGTACCTGGACTTCATCGTACTCGGG ATTTTCTTCATCTCCCTCCGCCTCATTGCCTATTTTGTCCTCAGGTACAAAATCCGGGCAGAGAGGTAAAACACCTGAATGCCAGGAAAC AGGAAGATTAGACACTGTGGCCGAGGGCACGTCTAGAATCGAGGAGGCAAGCCTGTGCCCGACCGACGACACAGAGACTCTTCTGATCCA ACCCCTAGAACCGCGTTGGGTTTGTGGGTGTCTCGTGCTCAGCCACTCTGCCCAGCTGGGTTGGATCTTCTCTCCATTCCCCTTTCTAGC TTTAACTAGGAAGATGTAGGCAGATTGGTGGTTTTTTTTTTTTTAACATACAGAATTTTAAATACCACAACTGGGGCAGAATTTAAAGCT GCAACACAGCTGGTGATGAGAGGCTTCCTCAGTCCAGTCGCTCCTTAGCACCAGGCACCGTGGGTCCTGGATGGGGAACTGCAAGCAGCC TCTCAGCTGATGGCTGCACAGTCAGATGTCTGGTGGCAGAGAGTCCGAGCATGGAGCGATTCCATTTTATGACTGTTGTTTTTCACATTT TCATCTTTCTAAGGTGTGTCTCTTTTCCAATGAGAAGTCATTTTTGCAAGCCAAAAGTCGATCAATCGCATTCATTTTAAGAAATTATAC CTTTTTAGTACTTGCTGAAGAATGATTCAGGGTAAATCACATACTTTGTTTAGAGAGGCGAGGGGTTTAACCGAGTCACCCAGCTGGTCT CATACATAGACAGCACTTGTGAAGGATTGAATGCAGGTTCCAGGTGGAGGGAAGACGTGGACACCATCTCCACTGAGCCATGCAGACATT TTTAAAAGCTATACAAAAAATTGTGAGAAGACATTGGCCAACTCTTTCAAAGTCTTTCTTTTTCCACGTGCTTCTTATTTTAAGCGAAAT |
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FusionGenePPI for PDXK_ABCG1 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
PDXK | ELAVL1, CUL3, CUL1, COPS5, CAND1, BARD1, YWHAQ, MOV10, NXF1, ABAT, OGT, EIF4E, EZR, G6PD, HIBADH, HYI, ITPA, MDH1, OAT, SNX2, SOD1, RABIF, TPI1, ATOH1 | ABCG1 | ELAVL1, ACSL4, AP1S2, NEDD4 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for PDXK_ABCG1 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Hgene | PDXK | O00764 | DB00165 | Pyridoxine | Pyridoxal kinase | small molecule | approved|investigational|nutraceutical|vet_approved |
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RelatedDiseases for PDXK_ABCG1 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | PDXK | C0038220 | Status Epilepticus | 1 | CTD_human |
Tgene | ABCG1 | C0009404 | Colorectal Neoplasms | 1 | CTD_human |
Tgene | ABCG1 | C0022661 | Kidney Failure, Chronic | 1 | CTD_human |
Tgene | ABCG1 | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |
Tgene | ABCG1 | C0043094 | Weight Gain | 1 | CTD_human |
Tgene | ABCG1 | C0525045 | Mood Disorders | 1 | PSYGENET |