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Fusion gene ID: 26542 |
FusionGeneSummary for PDLIM5_ZRANB1 |
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Fusion gene information | Fusion gene name: PDLIM5_ZRANB1 | Fusion gene ID: 26542 | Hgene | Tgene | Gene symbol | PDLIM5 | ZRANB1 | Gene ID | 10611 | 54764 |
Gene name | PDZ and LIM domain 5 | zinc finger RANBP2-type containing 1 | |
Synonyms | ENH|ENH1|L9|LIM | TRABID | |
Cytomap | 4q22.3 | 10q26.13 | |
Type of gene | protein-coding | protein-coding | |
Description | PDZ and LIM domain protein 5enigma homologenigma-like LIM domain proteinenigma-like PDZ and LIM domains protein | ubiquitin thioesterase ZRANB1TRAF-binding domain-containing proteinTRAF-binding protein domainhTrabidzinc finger Ran-binding domain-containing protein 1zinc finger, RAN-binding domain containing 1 | |
Modification date | 20180522 | 20180523 | |
UniProtAcc | Q96HC4 | Q9UGI0 | |
Ensembl transtripts involved in fusion gene | ENST00000450793, ENST00000538141, ENST00000380180, ENST00000318007, ENST00000437932, ENST00000317968, ENST00000542407, ENST00000508216, ENST00000514743, ENST00000380176, ENST00000359265, ENST00000512274, ENST00000504489, | ENST00000359653, ENST00000471421, | |
Fusion gene scores | * DoF score | 14 X 14 X 6=1176 | 3 X 3 X 2=18 |
# samples | 15 | 3 | |
** MAII score | log2(15/1176*10)=-2.97085365434048 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: PDLIM5 [Title/Abstract] AND ZRANB1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | ZRANB1 | GO:0035523 | protein K29-linked deubiquitination | 23827681 |
Tgene | ZRANB1 | GO:0070536 | protein K63-linked deubiquitination | 23827681 |
Tgene | ZRANB1 | GO:1990168 | protein K33-linked deubiquitination | 23827681|24768539 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | AW803539 | PDLIM5 | chr4 | 95453230 | - | ZRANB1 | chr10 | 126666961 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-intron | ENST00000450793 | ENST00000359653 | PDLIM5 | chr4 | 95453230 | - | ZRANB1 | chr10 | 126666961 | + |
intron-intron | ENST00000450793 | ENST00000471421 | PDLIM5 | chr4 | 95453230 | - | ZRANB1 | chr10 | 126666961 | + |
intron-intron | ENST00000538141 | ENST00000359653 | PDLIM5 | chr4 | 95453230 | - | ZRANB1 | chr10 | 126666961 | + |
intron-intron | ENST00000538141 | ENST00000471421 | PDLIM5 | chr4 | 95453230 | - | ZRANB1 | chr10 | 126666961 | + |
intron-intron | ENST00000380180 | ENST00000359653 | PDLIM5 | chr4 | 95453230 | - | ZRANB1 | chr10 | 126666961 | + |
intron-intron | ENST00000380180 | ENST00000471421 | PDLIM5 | chr4 | 95453230 | - | ZRANB1 | chr10 | 126666961 | + |
intron-intron | ENST00000318007 | ENST00000359653 | PDLIM5 | chr4 | 95453230 | - | ZRANB1 | chr10 | 126666961 | + |
intron-intron | ENST00000318007 | ENST00000471421 | PDLIM5 | chr4 | 95453230 | - | ZRANB1 | chr10 | 126666961 | + |
intron-intron | ENST00000437932 | ENST00000359653 | PDLIM5 | chr4 | 95453230 | - | ZRANB1 | chr10 | 126666961 | + |
intron-intron | ENST00000437932 | ENST00000471421 | PDLIM5 | chr4 | 95453230 | - | ZRANB1 | chr10 | 126666961 | + |
intron-intron | ENST00000317968 | ENST00000359653 | PDLIM5 | chr4 | 95453230 | - | ZRANB1 | chr10 | 126666961 | + |
intron-intron | ENST00000317968 | ENST00000471421 | PDLIM5 | chr4 | 95453230 | - | ZRANB1 | chr10 | 126666961 | + |
intron-intron | ENST00000542407 | ENST00000359653 | PDLIM5 | chr4 | 95453230 | - | ZRANB1 | chr10 | 126666961 | + |
intron-intron | ENST00000542407 | ENST00000471421 | PDLIM5 | chr4 | 95453230 | - | ZRANB1 | chr10 | 126666961 | + |
intron-intron | ENST00000508216 | ENST00000359653 | PDLIM5 | chr4 | 95453230 | - | ZRANB1 | chr10 | 126666961 | + |
intron-intron | ENST00000508216 | ENST00000471421 | PDLIM5 | chr4 | 95453230 | - | ZRANB1 | chr10 | 126666961 | + |
intron-intron | ENST00000514743 | ENST00000359653 | PDLIM5 | chr4 | 95453230 | - | ZRANB1 | chr10 | 126666961 | + |
intron-intron | ENST00000514743 | ENST00000471421 | PDLIM5 | chr4 | 95453230 | - | ZRANB1 | chr10 | 126666961 | + |
intron-intron | ENST00000380176 | ENST00000359653 | PDLIM5 | chr4 | 95453230 | - | ZRANB1 | chr10 | 126666961 | + |
intron-intron | ENST00000380176 | ENST00000471421 | PDLIM5 | chr4 | 95453230 | - | ZRANB1 | chr10 | 126666961 | + |
intron-intron | ENST00000359265 | ENST00000359653 | PDLIM5 | chr4 | 95453230 | - | ZRANB1 | chr10 | 126666961 | + |
intron-intron | ENST00000359265 | ENST00000471421 | PDLIM5 | chr4 | 95453230 | - | ZRANB1 | chr10 | 126666961 | + |
intron-intron | ENST00000512274 | ENST00000359653 | PDLIM5 | chr4 | 95453230 | - | ZRANB1 | chr10 | 126666961 | + |
intron-intron | ENST00000512274 | ENST00000471421 | PDLIM5 | chr4 | 95453230 | - | ZRANB1 | chr10 | 126666961 | + |
intron-intron | ENST00000504489 | ENST00000359653 | PDLIM5 | chr4 | 95453230 | - | ZRANB1 | chr10 | 126666961 | + |
intron-intron | ENST00000504489 | ENST00000471421 | PDLIM5 | chr4 | 95453230 | - | ZRANB1 | chr10 | 126666961 | + |
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FusionProtFeatures for PDLIM5_ZRANB1 |
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Hgene | Tgene |
PDLIM5 | ZRANB1 |
May play an important role in the heart development byscaffolding PKC to the Z-disk region. May play a role in theregulation of cardiomyocyte expansion. Overexpression promotes thedevelopment of heart hypertrophy. Contributes to the regulation ofdendritic spine morphogenesis in neurons. May restrainpostsynaptic growth of excitatory synapses (By similarity).{ECO:0000250}. | Specifically hydrolyzes 'Lys-29'-linked and 'Lys-33'-linked diubiquitin. Also cleaves 'Lys-63'-linked chains, but with40-fold less efficiency compared to 'Lys-29'-linked ones. Positiveregulator of the Wnt signaling pathway that deubiquitinates APCprotein, a negative regulator of Wnt-mediated transcription. Playsa role in the regulation of cell morphology and cytoskeletalorganization. Required in the stress fiber dynamics and cellmigration. May also modulate TNF-alpha signaling.{ECO:0000269|PubMed:18281465, ECO:0000269|PubMed:21834987,ECO:0000269|PubMed:22157957, ECO:0000269|PubMed:23827681}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for PDLIM5_ZRANB1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for PDLIM5_ZRANB1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for PDLIM5_ZRANB1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PDLIM5_ZRANB1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | PDLIM5 | C0005586 | Bipolar Disorder | 5 | PSYGENET |
Hgene | PDLIM5 | C0036341 | Schizophrenia | 4 | PSYGENET |
Hgene | PDLIM5 | C0041696 | Unipolar Depression | 4 | PSYGENET |
Hgene | PDLIM5 | C1269683 | Major Depressive Disorder | 4 | PSYGENET |
Hgene | PDLIM5 | C0151744 | Myocardial Ischemia | 1 | CTD_human |
Hgene | PDLIM5 | C0221765 | Chronic schizophrenia | 1 | PSYGENET |