![]() |
||||||
|
![]() | |
![]() | |
![]() | |
![]() | |
![]() | |
![]() |
Fusion gene ID: 26529 |
FusionGeneSummary for PDLIM5_ART3 |
![]() |
Fusion gene information | Fusion gene name: PDLIM5_ART3 | Fusion gene ID: 26529 | Hgene | Tgene | Gene symbol | PDLIM5 | ART3 | Gene ID | 10611 | 419 |
Gene name | PDZ and LIM domain 5 | ADP-ribosyltransferase 3 | |
Synonyms | ENH|ENH1|L9|LIM | ARTC3 | |
Cytomap | 4q22.3 | 4q21.1|4p15.1-p14 | |
Type of gene | protein-coding | protein-coding | |
Description | PDZ and LIM domain protein 5enigma homologenigma-like LIM domain proteinenigma-like PDZ and LIM domains protein | ecto-ADP-ribosyltransferase 3ADP-ribosyltransferase C2 and C3 toxin-like 3NAD(P)(+)--arginine ADP-ribosyltransferase 3mono(ADP-ribosyl)transferase 3mono-ADP-ribosyltransferase | |
Modification date | 20180522 | 20180523 | |
UniProtAcc | Q96HC4 | Q13508 | |
Ensembl transtripts involved in fusion gene | ENST00000450793, ENST00000538141, ENST00000380180, ENST00000318007, ENST00000437932, ENST00000317968, ENST00000542407, ENST00000508216, ENST00000514743, ENST00000380176, ENST00000359265, ENST00000512274, ENST00000504489, | ENST00000341029, ENST00000355810, ENST00000349321, ENST00000513494, | |
Fusion gene scores | * DoF score | 14 X 14 X 6=1176 | 3 X 2 X 3=18 |
# samples | 15 | 3 | |
** MAII score | log2(15/1176*10)=-2.97085365434048 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: PDLIM5 [Title/Abstract] AND ART3 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
![]() |
Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | BRCA | TCGA-LL-A7T0-01A | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-5UTR | ENST00000450793 | ENST00000341029 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-5UTR | ENST00000450793 | ENST00000355810 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-5UTR | ENST00000450793 | ENST00000349321 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-3UTR | ENST00000450793 | ENST00000513494 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-5UTR | ENST00000538141 | ENST00000341029 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-5UTR | ENST00000538141 | ENST00000355810 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-5UTR | ENST00000538141 | ENST00000349321 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-3UTR | ENST00000538141 | ENST00000513494 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-5UTR | ENST00000380180 | ENST00000341029 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-5UTR | ENST00000380180 | ENST00000355810 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-5UTR | ENST00000380180 | ENST00000349321 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-3UTR | ENST00000380180 | ENST00000513494 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-5UTR | ENST00000318007 | ENST00000341029 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-5UTR | ENST00000318007 | ENST00000355810 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-5UTR | ENST00000318007 | ENST00000349321 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-3UTR | ENST00000318007 | ENST00000513494 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-5UTR | ENST00000437932 | ENST00000341029 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-5UTR | ENST00000437932 | ENST00000355810 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-5UTR | ENST00000437932 | ENST00000349321 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-3UTR | ENST00000437932 | ENST00000513494 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-5UTR | ENST00000317968 | ENST00000341029 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-5UTR | ENST00000317968 | ENST00000355810 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-5UTR | ENST00000317968 | ENST00000349321 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-3UTR | ENST00000317968 | ENST00000513494 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5UTR-5UTR | ENST00000542407 | ENST00000341029 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5UTR-5UTR | ENST00000542407 | ENST00000355810 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5UTR-5UTR | ENST00000542407 | ENST00000349321 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5UTR-3UTR | ENST00000542407 | ENST00000513494 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-5UTR | ENST00000508216 | ENST00000341029 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-5UTR | ENST00000508216 | ENST00000355810 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-5UTR | ENST00000508216 | ENST00000349321 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-3UTR | ENST00000508216 | ENST00000513494 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-5UTR | ENST00000514743 | ENST00000341029 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-5UTR | ENST00000514743 | ENST00000355810 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-5UTR | ENST00000514743 | ENST00000349321 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-3UTR | ENST00000514743 | ENST00000513494 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
intron-5UTR | ENST00000380176 | ENST00000341029 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
intron-5UTR | ENST00000380176 | ENST00000355810 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
intron-5UTR | ENST00000380176 | ENST00000349321 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
intron-3UTR | ENST00000380176 | ENST00000513494 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-5UTR | ENST00000359265 | ENST00000341029 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-5UTR | ENST00000359265 | ENST00000355810 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-5UTR | ENST00000359265 | ENST00000349321 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-3UTR | ENST00000359265 | ENST00000513494 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-5UTR | ENST00000512274 | ENST00000341029 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-5UTR | ENST00000512274 | ENST00000355810 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-5UTR | ENST00000512274 | ENST00000349321 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-3UTR | ENST00000512274 | ENST00000513494 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-5UTR | ENST00000504489 | ENST00000341029 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-5UTR | ENST00000504489 | ENST00000355810 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-5UTR | ENST00000504489 | ENST00000349321 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
5CDS-3UTR | ENST00000504489 | ENST00000513494 | PDLIM5 | chr4 | 95376535 | + | ART3 | chr4 | 76997034 | + |
Top |
FusionProtFeatures for PDLIM5_ART3 |
![]() |
Hgene | Tgene |
PDLIM5 | ART3 |
May play an important role in the heart development byscaffolding PKC to the Z-disk region. May play a role in theregulation of cardiomyocyte expansion. Overexpression promotes thedevelopment of heart hypertrophy. Contributes to the regulation ofdendritic spine morphogenesis in neurons. May restrainpostsynaptic growth of excitatory synapses (By similarity).{ECO:0000250}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Top |
FusionGeneSequence for PDLIM5_ART3 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
Top |
FusionGenePPI for PDLIM5_ART3 |
![]() |
![]() |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
PDLIM5 | TRIM39, CACNA1B, PRKCB, PRKCE, GFI1B, NDUFA7, SIN3A, ELMSAN1, DSTN, FN1, CALU, EIF4A3, METTL1, NPLOC4, PDE12, ANP32A, CBS, IPO11, PKM, PLIN3, SRP14, UBA2, RAD23B, TPD52, ZYX, COIL, CCDC136, KRT40, KRTAP10-7, SUZ12, RNF2, BMI1, SIRT6, ILK, METTL6, RWDD2B, SYT11, DNAJC8, MAP2K1, MAP2K2, ARFIP2, CAMK2G, NTRK1, BTRC, MED4, SSX2IP, CEP128, CEP19, XPO1, CDH1, PDLIM7, TULP3, PHF19, NFATC2IP, DENR, TPM2, EMILIN1, ATG14, G3BP1, BRCA1, TES | ART3 | ALCAM, PRKCD, MDN1, ATP12A, PIGO, RAB39B, DDX19B, CHD1L, DYNC2LI1, PAM, NAGLU, ARSK, HSPA12A, GPD1L, ITGA7, MGAT5, CBWD3, POGLUT1, SPG7, PSEN2, MAP2K2, SCAMP2, GALNT7, ITGA8 |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for PDLIM5_ART3 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for PDLIM5_ART3 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | PDLIM5 | C0005586 | Bipolar Disorder | 5 | PSYGENET |
Hgene | PDLIM5 | C0036341 | Schizophrenia | 4 | PSYGENET |
Hgene | PDLIM5 | C0041696 | Unipolar Depression | 4 | PSYGENET |
Hgene | PDLIM5 | C1269683 | Major Depressive Disorder | 4 | PSYGENET |
Hgene | PDLIM5 | C0151744 | Myocardial Ischemia | 1 | CTD_human |
Hgene | PDLIM5 | C0221765 | Chronic schizophrenia | 1 | PSYGENET |