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Fusion gene ID: 26527 |
FusionGeneSummary for PDLIM3_SORBS2 |
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Fusion gene information | Fusion gene name: PDLIM3_SORBS2 | Fusion gene ID: 26527 | Hgene | Tgene | Gene symbol | PDLIM3 | SORBS2 | Gene ID | 27295 | 8470 |
Gene name | PDZ and LIM domain 3 | sorbin and SH3 domain containing 2 | |
Synonyms | ALP | ARGBP2|PRO0618 | |
Cytomap | 4q35.1 | 4q35.1 | |
Type of gene | protein-coding | protein-coding | |
Description | PDZ and LIM domain protein 3alpha-actinin-2-associated LIM proteinenigma homolog | sorbin and SH3 domain-containing protein 2Arg binding protein 2Arg/Abl-interacting protein 2arg-binding protein 2 | |
Modification date | 20180519 | 20180523 | |
UniProtAcc | Q53GG5 | O94875 | |
Ensembl transtripts involved in fusion gene | ENST00000284770, ENST00000284771, ENST00000284767, | ENST00000448662, ENST00000431808, ENST00000284776, ENST00000437304, ENST00000319471, ENST00000449407, ENST00000355634, ENST00000393528, ENST00000418609, ENST00000498125, | |
Fusion gene scores | * DoF score | 4 X 2 X 4=32 | 11 X 12 X 7=924 |
# samples | 4 | 15 | |
** MAII score | log2(4/32*10)=0.321928094887362 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(15/924*10)=-2.62293035092018 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: PDLIM3 [Title/Abstract] AND SORBS2 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | BRCA | TCGA-E2-A14N-01A | PDLIM3 | chr4 | 186456496 | - | SORBS2 | chr4 | 186508842 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000284770 | ENST00000448662 | PDLIM3 | chr4 | 186456496 | - | SORBS2 | chr4 | 186508842 | - |
Frame-shift | ENST00000284770 | ENST00000431808 | PDLIM3 | chr4 | 186456496 | - | SORBS2 | chr4 | 186508842 | - |
In-frame | ENST00000284770 | ENST00000284776 | PDLIM3 | chr4 | 186456496 | - | SORBS2 | chr4 | 186508842 | - |
In-frame | ENST00000284770 | ENST00000437304 | PDLIM3 | chr4 | 186456496 | - | SORBS2 | chr4 | 186508842 | - |
Frame-shift | ENST00000284770 | ENST00000319471 | PDLIM3 | chr4 | 186456496 | - | SORBS2 | chr4 | 186508842 | - |
Frame-shift | ENST00000284770 | ENST00000449407 | PDLIM3 | chr4 | 186456496 | - | SORBS2 | chr4 | 186508842 | - |
Frame-shift | ENST00000284770 | ENST00000355634 | PDLIM3 | chr4 | 186456496 | - | SORBS2 | chr4 | 186508842 | - |
In-frame | ENST00000284770 | ENST00000393528 | PDLIM3 | chr4 | 186456496 | - | SORBS2 | chr4 | 186508842 | - |
Frame-shift | ENST00000284770 | ENST00000418609 | PDLIM3 | chr4 | 186456496 | - | SORBS2 | chr4 | 186508842 | - |
5CDS-intron | ENST00000284770 | ENST00000498125 | PDLIM3 | chr4 | 186456496 | - | SORBS2 | chr4 | 186508842 | - |
Frame-shift | ENST00000284771 | ENST00000448662 | PDLIM3 | chr4 | 186456496 | - | SORBS2 | chr4 | 186508842 | - |
Frame-shift | ENST00000284771 | ENST00000431808 | PDLIM3 | chr4 | 186456496 | - | SORBS2 | chr4 | 186508842 | - |
In-frame | ENST00000284771 | ENST00000284776 | PDLIM3 | chr4 | 186456496 | - | SORBS2 | chr4 | 186508842 | - |
In-frame | ENST00000284771 | ENST00000437304 | PDLIM3 | chr4 | 186456496 | - | SORBS2 | chr4 | 186508842 | - |
Frame-shift | ENST00000284771 | ENST00000319471 | PDLIM3 | chr4 | 186456496 | - | SORBS2 | chr4 | 186508842 | - |
Frame-shift | ENST00000284771 | ENST00000449407 | PDLIM3 | chr4 | 186456496 | - | SORBS2 | chr4 | 186508842 | - |
Frame-shift | ENST00000284771 | ENST00000355634 | PDLIM3 | chr4 | 186456496 | - | SORBS2 | chr4 | 186508842 | - |
In-frame | ENST00000284771 | ENST00000393528 | PDLIM3 | chr4 | 186456496 | - | SORBS2 | chr4 | 186508842 | - |
Frame-shift | ENST00000284771 | ENST00000418609 | PDLIM3 | chr4 | 186456496 | - | SORBS2 | chr4 | 186508842 | - |
5CDS-intron | ENST00000284771 | ENST00000498125 | PDLIM3 | chr4 | 186456496 | - | SORBS2 | chr4 | 186508842 | - |
Frame-shift | ENST00000284767 | ENST00000448662 | PDLIM3 | chr4 | 186456496 | - | SORBS2 | chr4 | 186508842 | - |
Frame-shift | ENST00000284767 | ENST00000431808 | PDLIM3 | chr4 | 186456496 | - | SORBS2 | chr4 | 186508842 | - |
In-frame | ENST00000284767 | ENST00000284776 | PDLIM3 | chr4 | 186456496 | - | SORBS2 | chr4 | 186508842 | - |
In-frame | ENST00000284767 | ENST00000437304 | PDLIM3 | chr4 | 186456496 | - | SORBS2 | chr4 | 186508842 | - |
Frame-shift | ENST00000284767 | ENST00000319471 | PDLIM3 | chr4 | 186456496 | - | SORBS2 | chr4 | 186508842 | - |
Frame-shift | ENST00000284767 | ENST00000449407 | PDLIM3 | chr4 | 186456496 | - | SORBS2 | chr4 | 186508842 | - |
Frame-shift | ENST00000284767 | ENST00000355634 | PDLIM3 | chr4 | 186456496 | - | SORBS2 | chr4 | 186508842 | - |
In-frame | ENST00000284767 | ENST00000393528 | PDLIM3 | chr4 | 186456496 | - | SORBS2 | chr4 | 186508842 | - |
Frame-shift | ENST00000284767 | ENST00000418609 | PDLIM3 | chr4 | 186456496 | - | SORBS2 | chr4 | 186508842 | - |
5CDS-intron | ENST00000284767 | ENST00000498125 | PDLIM3 | chr4 | 186456496 | - | SORBS2 | chr4 | 186508842 | - |
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FusionProtFeatures for PDLIM3_SORBS2 |
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Hgene | Tgene |
PDLIM3 | SORBS2 |
May play a role in the organization of actin filamentarrays within muscle cells. {ECO:0000250}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for PDLIM3_SORBS2 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for PDLIM3_SORBS2 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
PDLIM3 | LMNA, BAG3, ACTN2, ALK, RHOU | SORBS2 | YWHAE, SFN, CBL, PTK2B, FLOT1, RPL9, DLGAP4, DLGAP1, VCL, MLLT4, ABL2, ABL1, EGFR, NR1H2, SEMA6A, PALLD, ACTN1, ADAM15, WASF1, PTPN12, BAG3, AKT2, MDM2, YWHAZ, YWHAB, WAS, NCK2, SORBS2, EFS, VPS37C, SH2D4A, ATPAF2, SUZ12, CAPZA2, CLTC, DBN1, FLNA, MYH9, MYO1C, PPP1CB, IQGAP1, SYNPO, MAPRE1, LIMA1, ANLN, MYO18A, FAT1 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for PDLIM3_SORBS2 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PDLIM3_SORBS2 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | SORBS2 | C0043094 | Weight Gain | 1 | CTD_human |